Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 3.2e-220 768.1 372 100.0
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 4.5e-57 226.1 255 43.5
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 4.0e-50 203.0 251 41.8
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 6.9e-50 202.2 253 40.7
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.2e-49 201.4 256 39.1
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 2.0e-49 200.7 242 41.3
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.0e-49 200.7 255 39.2
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 3.4e-49 199.9 276 39.1
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 4.5e-49 199.5 264 40.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 7.6e-49 198.7 254 38.6
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 7.6e-49 198.7 239 42.3
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.3e-48 198.0 238 40.3
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 2.2e-48 197.2 245 42.4
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 2.2e-48 197.2 245 42.4
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 2.2e-48 197.2 271 39.5
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 2.9e-48 196.8 251 39.0
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 3.8e-48 196.4 254 38.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 3.8e-48 196.4 249 41.0
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.9e-48 196.1 256 40.2
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 4.9e-48 196.1 256 40.2
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 6.5e-48 195.7 251 41.8
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 8.4e-48 195.3 253 39.1
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 8.4e-48 195.3 249 40.2
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.1e-47 194.9 261 38.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.4e-47 194.5 255 39.2
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.9e-47 194.1 255 38.4
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.9e-47 194.1 254 39.4
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 2.5e-47 193.7 255 38.8
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.5e-47 193.7 255 39.6
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 3.2e-47 193.4 258 39.5
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 3.2e-47 193.4 261 37.9
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 4.2e-47 193.0 236 41.5
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 4.2e-47 193.0 240 39.6
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 4.2e-47 193.0 254 38.2
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.5e-47 192.6 259 39.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 9.3e-47 191.8 236 39.8
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 9.3e-47 191.8 242 40.1
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 1.2e-46 191.4 253 40.3
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 1.6e-46 191.0 254 37.4
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 2.1e-46 190.7 236 41.5
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 2.1e-46 190.7 242 40.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.7e-46 190.3 234 42.3
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 3.5e-46 189.9 254 37.4
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 4.6e-46 189.5 240 40.0
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 4.6e-46 189.5 254 38.2
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 4.6e-46 189.5 235 40.9
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.6e-46 189.5 237 39.7
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 4.6e-46 189.5 234 42.3
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 6.0e-46 189.1 254 40.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 6.0e-46 189.1 268 38.4
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 6.0e-46 189.1 255 38.0
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 7.9e-46 188.7 231 41.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 7.9e-46 188.7 237 39.2
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 1.0e-45 188.3 255 37.6
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 1.0e-45 188.3 253 38.3
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.3e-45 188.0 251 38.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 1.8e-45 187.6 236 40.3
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.8e-45 187.6 239 40.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 3.0e-45 186.8 240 40.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 3.9e-45 186.4 269 36.4
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 3.9e-45 186.4 236 40.3
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 5.1e-45 186.0 247 38.9
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 5.1e-45 186.0 235 38.3
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.7e-45 185.7 236 39.8
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 6.7e-45 185.7 255 37.6
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 6.7e-45 185.7 255 37.6
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 6.7e-45 185.7 244 39.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 8.7e-45 185.3 288 35.8
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 8.7e-45 185.3 237 39.2
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-44 184.9 250 39.2
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.1e-44 184.9 250 39.2
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-44 184.9 250 37.2
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 1.1e-44 184.9 260 36.9
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-44 184.5 236 39.8
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.5e-44 184.5 236 39.8
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.5e-44 184.5 235 39.6
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 1.5e-44 184.5 238 39.9
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.5e-44 184.5 260 37.7
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.5e-44 184.5 253 37.5
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.5e-44 184.5 255 38.4
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.5e-44 183.7 241 40.7
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.5e-44 183.7 260 36.9
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.3e-44 183.3 232 40.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 4.3e-44 183.0 238 38.7
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 5.7e-44 182.6 249 37.8
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 9.7e-44 181.8 235 38.7
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 9.7e-44 181.8 235 38.7
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 9.7e-44 181.8 231 42.0
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 1.3e-43 181.4 236 38.6
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.6e-43 181.0 235 39.6
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.6e-43 181.0 235 39.6
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.2e-43 180.6 236 39.0
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 2.2e-43 180.6 239 38.5
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 2.8e-43 180.3 236 39.0
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 3.7e-43 179.9 240 38.8
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 3.7e-43 179.9 253 36.8
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 3.7e-43 179.9 271 36.9
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 6.3e-43 179.1 251 38.2
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.1e-42 178.3 237 39.2
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.1e-42 178.3 222 41.4
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.4e-42 177.9 228 40.8
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 1.4e-42 177.9 246 39.4
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.2e-41 174.9 301 34.9
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 7.6e-41 172.2 310 33.2
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.7e-40 171.0 223 40.8
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.1e-39 168.3 270 35.2
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.1e-39 168.3 253 36.8
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.2e-38 164.9 286 34.6
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.6e-38 164.5 216 38.9
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.6e-38 163.3 235 40.0
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 4.6e-38 162.9 327 31.2
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 2.3e-37 160.6 206 40.8
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 3.0e-37 160.2 271 33.6
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 3.9e-37 159.8 247 38.1
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 6.7e-37 159.1 234 35.5
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 2.5e-36 157.1 247 36.4
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 3.3e-36 156.8 274 35.8
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 2.2e-35 154.1 200 38.5
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.2e-35 154.1 251 36.3
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.8e-35 152.9 238 35.3
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.8e-35 152.9 238 35.3
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 1.8e-34 151.0 237 33.8
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 3.1e-34 150.2 244 33.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 4.1e-34 149.8 198 41.4
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.5e-33 147.9 236 36.4
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 1.5e-33 147.9 178 43.3
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 2.1e-30 137.5 311 29.6
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.1e-30 136.0 202 35.1
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 7.9e-30 135.6 221 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 3.9e-29 133.3 136 45.6
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.5e-28 131.3 168 38.1
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 8.5e-24 115.5 213 33.8
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 7.2e-23 112.5 197 33.5
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.0e-21 108.6 213 29.6
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 4.4e-20 103.2 145 34.5
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 3.7e-19 100.1 197 31.0
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 2.6e-17 94.0 134 37.3
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 7.7e-17 92.4 111 41.4
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 6.5e-16 89.4 188 31.4
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.1e-15 88.6 93 46.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 1.9e-15 87.8 129 38.8
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.0e-13 82.0 91 41.8
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 1.4e-13 81.6 164 30.5
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.5e-12 78.2 121 35.5
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 1.7e-11 74.7 73 49.3
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 3.7e-11 73.6 110 33.6
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 2.4e-10 70.9 101 43.6
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.7e-06 57.4 47 57.4


User provided reference genes

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