Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 6.0e-189 664.1 350 100.0
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.4e-105 387.1 285 70.5
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 8.6e-103 377.9 313 64.5
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 6.8e-100 368.2 331 62.2
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 8.9e-100 367.9 309 62.1
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 1.2e-99 367.5 309 62.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 1.2e-99 367.5 340 58.5
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.2e-99 367.5 312 61.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 1.5e-99 367.1 316 63.0
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.6e-99 366.3 309 61.8
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 3.4e-99 365.9 309 61.8
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 4.4e-99 365.5 353 57.5
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 4.4e-99 365.5 309 61.5
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 5.8e-99 365.2 339 58.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 5.8e-99 365.2 346 56.9
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 9.9e-99 364.4 338 58.9
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 9.9e-99 364.4 338 59.2
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 1.3e-98 364.0 339 58.1
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.7e-98 363.6 335 59.1
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 2.2e-98 363.2 337 58.5
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.2e-98 363.2 346 58.1
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.2e-98 363.2 366 56.0
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 2.9e-98 362.8 308 62.0
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 3.8e-98 362.5 353 56.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 3.8e-98 362.5 309 61.2
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 3.8e-98 362.5 313 60.7
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 4.9e-98 362.1 366 55.7
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 4.9e-98 362.1 349 57.3
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 8.4e-98 361.3 309 61.2
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 8.4e-98 361.3 330 59.4
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 1.1e-97 360.9 313 61.0
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.1e-97 360.9 309 61.2
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.4e-97 360.5 338 58.3
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-97 360.5 338 58.3
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.4e-97 360.5 362 55.8
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 1.4e-97 360.5 312 60.9
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.4e-97 360.5 308 61.4
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-97 359.8 366 55.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.4e-97 359.8 313 60.4
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.4e-97 359.8 309 60.8
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.2e-97 359.4 309 60.8
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 4.2e-97 359.0 360 56.4
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 4.2e-97 359.0 326 59.8
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 4.2e-97 359.0 333 58.0
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.2e-97 359.0 351 57.0
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 4.2e-97 359.0 352 58.0
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 5.4e-97 358.6 339 58.1
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 5.4e-97 358.6 336 59.2
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 7.1e-97 358.2 344 57.3
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 7.1e-97 358.2 339 57.5
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 9.2e-97 357.8 365 55.6
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 9.2e-97 357.8 362 55.5
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 9.2e-97 357.8 309 61.8
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 9.2e-97 357.8 312 61.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 9.2e-97 357.8 326 60.4
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 9.2e-97 357.8 326 60.4
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.2e-96 357.5 334 58.4
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.2e-96 357.5 309 61.5
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.2e-96 357.5 330 58.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-96 357.5 309 60.8
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 1.6e-96 357.1 365 55.1
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 1.6e-96 357.1 365 55.1
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.6e-96 357.1 334 58.1
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.6e-96 357.1 309 60.2
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.1e-96 356.7 367 55.0
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 2.7e-96 356.3 338 58.0
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 3.5e-96 355.9 332 58.4
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.5e-96 355.9 345 56.8
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 4.6e-96 355.5 338 57.4
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 4.6e-96 355.5 367 54.0
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.6e-96 355.5 312 60.3
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 4.6e-96 355.5 334 58.1
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 4.6e-96 355.5 367 56.1
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 4.6e-96 355.5 326 58.9
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 6.0e-96 355.1 365 54.5
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 6.0e-96 355.1 331 59.2
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 6.0e-96 355.1 338 57.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 6.0e-96 355.1 308 60.7
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 6.0e-96 355.1 326 58.9
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 7.8e-96 354.8 327 58.7
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 1.0e-95 354.4 312 60.3
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.0e-95 354.4 330 57.6
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 1.0e-95 354.4 326 58.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.3e-95 354.0 305 61.0
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.3e-95 354.0 309 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 2.3e-95 353.2 349 57.9
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 2.3e-95 353.2 330 58.5
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 2.3e-95 353.2 332 57.5
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 3.0e-95 352.8 340 56.8
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 3.0e-95 352.8 353 56.4
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.0e-95 352.8 331 58.9
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 3.0e-95 352.8 312 60.6
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 3.9e-95 352.4 356 54.2
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.9e-95 352.4 304 61.2
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.1e-95 352.1 323 59.8
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 6.6e-95 351.7 308 60.7
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.5e-94 350.5 336 57.4
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 2.5e-94 349.7 293 62.8
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 4.3e-94 349.0 333 58.6
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 5.6e-94 348.6 348 56.6
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 7.3e-94 348.2 312 59.9
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-93 347.4 332 56.6
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 1.6e-93 347.1 308 58.4
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-93 346.7 358 54.5
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 2.1e-93 346.7 358 54.5
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 2.8e-93 346.3 311 58.2
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.6e-93 345.9 349 55.0
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 6.2e-93 345.1 349 55.0
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-92 344.4 352 55.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-92 343.6 390 51.8
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.8e-92 343.6 390 51.8
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 1.2e-91 340.9 299 60.5
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.0e-91 340.1 321 58.6
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.0e-91 340.1 388 51.5
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 4.4e-91 339.0 343 54.8
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 5.8e-91 338.6 305 58.7
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.9e-89 333.6 293 60.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.2e-89 332.8 299 60.2
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 9.3e-89 331.3 295 59.3
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 3.5e-88 329.3 327 57.5
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 8.7e-87 324.7 367 52.9
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 2.5e-86 323.2 379 50.1
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.3e-86 322.4 335 54.0
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 4.0e-84 315.8 332 54.5
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 4.2e-81 305.8 309 55.0
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 9.3e-81 304.7 291 58.1
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.0e-79 299.7 363 49.6
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 2.1e-77 293.5 315 54.6
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.2e-73 279.3 247 61.5
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-70 270.8 269 56.1
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.4e-67 259.6 329 49.5
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.5e-65 253.4 297 47.5
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.9e-63 246.1 256 53.1
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.4e-60 237.7 313 45.7
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.3e-54 216.5 201 59.2
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-52 211.5 201 55.7
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.1e-52 211.5 201 55.7
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.5e-51 206.1 332 41.0
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.7e-46 189.1 165 60.6
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 8.8e-39 165.2 344 35.8
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.2e-32 144.8 114 64.0
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.0e-31 140.2 154 53.2
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 9.8e-22 108.6 175 41.7
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.8e-22 108.6 184 39.1
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 1.5e-14 84.7 65 61.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.0e-14 84.3 65 61.5
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 4.4e-14 83.2 81 54.3
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.3e-13 79.0 149 34.9
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 9.2e-12 75.5 210 31.4
Cfa025045 Carpinus fangiana HOM05D000736 ORTHO05D123549 2.3e-07 60.8 271 27.7


User provided reference genes

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