Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.0e-185 653.3 344 100.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.8e-21 106.3 169 43.2
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 9.0e-20 102.1 167 34.7
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-19 101.3 167 34.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-19 100.9 167 34.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 7.6e-19 99.0 161 34.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 9.9e-19 98.6 155 36.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.9e-18 97.1 160 34.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.9e-18 97.1 160 34.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.8e-18 96.7 214 34.1
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.8e-18 96.7 160 37.5
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.8e-18 96.7 160 34.4
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 4.9e-18 96.3 163 33.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.9e-18 96.3 160 34.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 4.9e-18 96.3 203 33.5
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 6.4e-18 95.9 148 36.5
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 6.4e-18 95.9 187 35.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 8.4e-18 95.5 176 34.1
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 8.4e-18 95.5 158 35.4
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.1e-17 95.1 158 34.8
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.4e-17 94.7 153 34.6
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.4e-17 94.7 160 33.8
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 2.4e-17 94.0 161 33.5
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.4e-17 94.0 144 37.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 2.4e-17 94.0 168 33.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.4e-17 94.0 173 32.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 3.2e-17 93.6 171 30.4
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.2e-17 93.2 162 35.8
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 4.2e-17 93.2 171 31.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.2e-17 93.2 158 32.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.2e-17 93.2 173 32.4
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.2e-17 93.2 176 37.5
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.2e-17 93.2 147 34.7
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 5.5e-17 92.8 148 34.5
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 7.1e-17 92.4 148 35.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 7.1e-17 92.4 145 35.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 7.1e-17 92.4 148 35.8
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 9.3e-17 92.0 159 33.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 9.3e-17 92.0 153 33.3
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 9.3e-17 92.0 163 33.7
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 9.3e-17 92.0 163 33.7
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 9.3e-17 92.0 163 33.7
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 9.3e-17 92.0 163 33.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 9.3e-17 92.0 163 33.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 9.3e-17 92.0 162 34.6
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 9.3e-17 92.0 143 36.4
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.3e-17 92.0 173 33.5
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 9.3e-17 92.0 143 36.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.3e-17 92.0 160 32.5
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 9.3e-17 92.0 162 34.0
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-16 91.7 160 34.4
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.2e-16 91.7 152 34.9
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.6e-16 91.3 158 34.2
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-16 91.3 147 35.4
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.6e-16 91.3 173 32.9
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.1e-16 90.9 239 30.1
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.1e-16 90.9 179 31.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 2.1e-16 90.9 160 33.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.1e-16 90.9 186 32.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.1e-16 90.9 183 31.1
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.7e-16 90.5 158 34.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 2.7e-16 90.5 156 35.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.7e-16 90.5 148 35.1
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.7e-16 90.5 182 34.1
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.7e-16 90.5 158 32.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 2.7e-16 90.5 160 31.9
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 2.7e-16 90.5 152 34.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.5e-16 90.1 148 34.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 3.5e-16 90.1 159 34.0
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.5e-16 90.1 144 36.1
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 3.5e-16 90.1 158 34.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.5e-16 90.1 148 34.5
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 3.5e-16 90.1 147 34.0
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.5e-16 90.1 151 37.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.5e-16 90.1 144 36.8
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 4.6e-16 89.7 158 34.2
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 4.6e-16 89.7 158 34.2
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.6e-16 89.7 158 32.9
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.0e-16 89.4 152 33.6
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 6.0e-16 89.4 148 35.1
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.0e-16 89.4 152 37.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 6.0e-16 89.4 147 34.7
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 6.0e-16 89.4 148 34.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 6.0e-16 89.4 144 34.7
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 6.0e-16 89.4 147 33.3
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.0e-16 89.4 179 33.5
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 6.0e-16 89.4 142 37.3
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 7.9e-16 89.0 173 30.6
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.0e-15 88.6 148 33.8
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.0e-15 88.6 208 31.7
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.0e-15 88.6 148 35.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-15 88.6 152 34.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-15 88.6 158 34.2
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-15 88.6 159 32.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.0e-15 88.6 150 36.7
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.3e-15 88.2 147 34.7
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.3e-15 88.2 157 34.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.8e-15 87.8 208 32.2
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 2.3e-15 87.4 249 29.7
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 2.3e-15 87.4 148 34.5
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.0e-15 87.0 159 34.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.9e-15 86.7 144 35.4
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.9e-15 86.7 157 31.8
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 3.9e-15 86.7 148 33.8
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 5.1e-15 86.3 152 32.2
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.1e-15 86.3 238 29.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.1e-15 86.3 225 29.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.1e-15 86.3 158 32.9
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 6.7e-15 85.9 148 35.1
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.7e-15 85.5 216 27.8
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.7e-15 85.5 152 32.2
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 8.7e-15 85.5 158 32.9
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 8.7e-15 85.5 148 34.5
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.3e-14 83.6 160 31.2
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 4.3e-14 83.2 172 33.7
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.3e-14 83.2 148 34.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 7.4e-14 82.4 148 33.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 7.4e-14 82.4 148 33.1
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 9.6e-14 82.0 172 31.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.6e-13 81.3 202 29.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.6e-13 81.3 165 33.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 2.8e-13 80.5 162 37.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.8e-13 80.5 165 33.3
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.7e-13 80.1 148 35.1
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 6.2e-13 79.3 147 34.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-12 76.3 192 30.7
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.9e-12 75.9 174 29.9
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 4.5e-11 73.2 143 32.2
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.2e-10 70.9 134 32.1
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.9e-10 69.7 150 31.3
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-08 65.1 156 33.3
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.1e-08 64.3 142 29.6
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.5e-08 63.5 128 30.5
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 6.0e-08 62.8 109 33.9
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.0e-07 62.0 156 30.8
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.8e-07 61.2 148 30.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 3.0e-07 60.5 158 27.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 3.0e-07 60.5 107 34.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 6.7e-07 59.3 112 31.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 8.7e-07 58.9 158 28.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.9e-06 57.8 131 30.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.5e-06 57.4 143 27.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-06 56.6 157 28.0


User provided reference genes

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