Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 7.0e-237 823.5 411 100.0
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.2e-126 456.4 365 61.6
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 8.5e-126 454.5 367 59.9
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 8.5e-126 454.5 365 61.4
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 1.1e-125 454.1 366 61.5
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 2.5e-125 453.0 400 57.0
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.2e-125 452.2 365 60.8
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 4.2e-125 452.2 391 57.5
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 5.5e-125 451.8 367 59.7
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 7.2e-125 451.4 368 60.1
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 7.2e-125 451.4 366 60.7
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 7.2e-125 451.4 405 57.3
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 9.4e-125 451.1 377 59.2
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 1.2e-124 450.7 393 58.3
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 1.2e-124 450.7 386 57.8
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.6e-124 450.3 377 59.2
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 1.6e-124 450.3 365 60.3
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 2.1e-124 449.9 377 57.8
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 2.1e-124 449.9 367 59.4
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.6e-124 449.1 365 60.3
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 3.6e-124 449.1 375 58.7
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 4.7e-124 448.7 396 57.1
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 4.7e-124 448.7 365 59.2
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.7e-124 448.7 367 59.1
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 4.7e-124 448.7 375 58.9
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 6.1e-124 448.4 376 59.6
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 6.1e-124 448.4 365 59.2
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.0e-124 448.0 365 60.0
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 8.0e-124 448.0 371 58.8
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 1.0e-123 447.6 363 60.1
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.0e-123 447.6 365 59.5
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 1.0e-123 447.6 365 60.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.0e-123 447.6 377 57.8
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.4e-123 447.2 365 58.9
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.4e-123 447.2 371 58.2
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 1.4e-123 447.2 377 58.1
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 1.8e-123 446.8 388 56.7
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 1.8e-123 446.8 368 59.2
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 2.3e-123 446.4 365 60.3
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 3.0e-123 446.0 376 59.3
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 4.0e-123 445.7 367 59.1
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 5.2e-123 445.3 367 58.3
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 5.2e-123 445.3 371 58.5
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 6.8e-123 444.9 377 60.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 6.8e-123 444.9 364 60.7
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 6.8e-123 444.9 365 59.2
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 8.8e-123 444.5 376 59.0
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 8.8e-123 444.5 365 58.4
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 8.8e-123 444.5 377 57.0
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-122 444.1 396 56.1
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.5e-122 443.7 362 59.1
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.5e-122 443.7 389 57.8
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.5e-122 443.7 394 57.1
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.5e-122 443.7 394 57.1
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 2.0e-122 443.4 375 59.5
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.6e-122 443.0 365 58.4
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 3.4e-122 442.6 393 57.5
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 3.4e-122 442.6 365 59.7
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 4.4e-122 442.2 365 58.6
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 4.4e-122 442.2 365 59.2
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 5.7e-122 441.8 366 60.1
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 5.7e-122 441.8 364 60.2
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 7.5e-122 441.4 365 59.5
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 7.5e-122 441.4 381 58.3
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 9.8e-122 441.0 365 59.5
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 9.8e-122 441.0 365 58.6
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.7e-121 440.3 390 57.2
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 1.7e-121 440.3 382 56.5
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.7e-121 440.3 362 59.7
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.2e-121 439.9 365 59.2
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.8e-121 439.5 364 60.2
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.8e-121 439.5 365 59.5
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 2.8e-121 439.5 361 58.7
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 3.7e-121 439.1 364 59.9
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 3.7e-121 439.1 389 57.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 3.7e-121 439.1 389 57.6
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.7e-121 439.1 393 56.7
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 3.7e-121 439.1 368 60.9
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 3.7e-121 439.1 397 56.9
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.7e-121 439.1 365 59.2
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 4.8e-121 438.7 364 59.9
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.3e-121 438.0 364 59.6
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 8.3e-121 438.0 362 59.9
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 1.1e-120 437.6 402 54.2
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 1.4e-120 437.2 365 58.9
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 2.4e-120 436.4 362 59.9
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 3.1e-120 436.0 365 58.9
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 3.1e-120 436.0 417 54.0
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 4.1e-120 435.6 364 59.6
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.1e-120 435.6 364 59.6
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.1e-120 435.6 365 58.1
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 7.0e-120 434.9 365 57.8
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 9.1e-120 434.5 399 56.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.6e-119 433.7 371 56.9
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 2.0e-119 433.3 375 57.9
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.0e-119 433.3 366 58.5
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 2.0e-119 433.3 365 59.2
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.7e-119 433.0 364 59.3
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 4.5e-119 432.2 369 58.3
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.5e-119 432.2 367 58.6
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 7.7e-119 431.4 362 59.7
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 5.0e-118 428.7 370 57.3
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.1e-117 427.6 370 56.8
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 3.2e-117 426.0 384 55.7
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 7.2e-117 424.9 432 50.9
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 3.6e-116 422.5 384 54.4
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.6e-116 422.5 390 55.1
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-114 417.5 377 57.0
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 4.4e-114 415.6 395 53.9
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 2.2e-113 413.3 476 46.8
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.1e-112 411.0 350 59.1
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 1.6e-111 407.1 322 60.9
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 4.5e-111 405.6 370 55.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 5.0e-110 402.1 368 54.9
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 3.3e-109 399.4 322 60.2
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 3.6e-108 396.0 407 51.4
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 1.0e-107 394.4 323 61.0
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.5e-103 379.4 409 49.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 3.5e-95 352.8 304 57.9
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.1e-87 327.0 314 52.5
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 3.9e-86 322.8 365 46.3
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 4.3e-85 319.3 447 40.7
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.2e-79 301.2 365 46.0
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 1.7e-78 297.4 258 58.1
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 3.0e-78 296.6 260 57.7
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 3.9e-78 296.2 302 52.3
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.1e-72 278.1 250 56.4
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 7.1e-72 275.4 311 48.6
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 6.6e-62 242.3 264 50.0
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.8e-59 234.2 369 38.2
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 8.7e-54 215.3 385 35.6
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.2e-49 200.7 170 58.8
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 6.5e-49 199.1 173 56.1
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 9.3e-48 195.3 173 56.1
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 7.4e-45 185.7 191 55.0
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 5.9e-42 176.0 152 55.3
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 5.9e-42 176.0 152 55.3
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-40 170.2 134 57.5
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 1.1e-37 161.8 154 52.6
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.6e-36 157.9 128 57.0
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.5e-34 151.4 368 30.7
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-29 135.2 126 52.4
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 2.2e-25 120.9 157 43.3
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.8e-25 120.2 181 43.1
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.6e-23 114.8 86 59.3
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 3.9e-22 110.2 83 63.9
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 7.0e-19 99.4 121 43.8
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 5.9e-18 96.3 84 58.3
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 5.9e-18 96.3 124 40.3
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.1e-16 92.0 112 44.6
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 4.0e-14 83.6 77 50.6
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 5.7e-13 79.7 370 25.9
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 2.8e-12 77.4 171 31.0
Pp3s32_480 Physcomitrium patens HOM05D003605 ORTHO05D309393 7.0e-11 72.8 305 23.9
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 7.0e-11 72.8 42 76.2
Medtr8g091280 Medicago truncatula HOM05D003605 ORTHO05D004292 4.5e-10 70.1 366 24.0
Mapoly0058s0104 Marchantia polymorpha HOM05D003605 ORTHO05D004292 1.0e-09 68.9 223 26.9
Eucgr.I00395 Eucalyptus grandis HOM05D003605 ORTHO05D004292 5.0e-09 66.6 233 27.5
PRCOL_00004854 Prasinoderma coloniale HOM05D003605 ORTHO05D004292 5.0e-09 66.6 233 27.9
Sed0005010 Sechium edule HOM05D002771 ORTHO05D003078 9.4e-08 62.4 165 24.8
MCO03G285 Micromonas commoda HOM05D003605 ORTHO05D004292 1.6e-07 61.6 212 26.4


User provided reference genes

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