Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.4e-91 338.2 158 100.0
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.6e-24 115.5 136 41.2
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.2e-24 114.8 142 39.4
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.2e-24 114.8 142 39.4
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.0e-23 114.0 104 47.1
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.4e-23 113.6 126 40.5
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.0e-23 112.1 122 41.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 5.2e-23 111.7 103 45.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 6.8e-23 111.3 103 45.6
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.2e-22 110.5 103 45.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.2e-22 110.5 158 34.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.2e-22 110.5 103 45.6
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.5e-22 110.2 103 45.6
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.5e-22 110.2 103 45.6
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.5e-22 110.2 103 45.6
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.5e-22 110.2 169 37.9
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.5e-22 110.2 126 38.9
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.0e-22 109.8 103 44.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.0e-22 109.8 102 47.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.6e-22 109.4 102 47.1
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 5.8e-22 108.2 103 45.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.8e-22 108.2 143 37.8
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.5e-22 107.8 165 35.8
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 7.5e-22 107.8 103 47.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 7.5e-22 107.8 103 43.7
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 9.8e-22 107.5 100 46.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 9.8e-22 107.5 138 39.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.8e-22 107.5 103 46.6
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.8e-22 107.5 169 37.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.8e-22 107.5 169 37.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 9.8e-22 107.5 103 43.7
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 9.8e-22 107.5 103 44.7
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 9.8e-22 107.5 102 47.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 9.8e-22 107.5 103 45.6
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.3e-21 107.1 103 44.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-21 107.1 103 46.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.3e-21 107.1 167 36.5
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-21 107.1 103 44.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.7e-21 106.7 165 35.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.7e-21 106.7 102 44.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.2e-21 106.3 110 42.7
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-21 106.3 103 45.6
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.2e-21 106.3 145 35.9
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.9e-21 105.9 102 44.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.9e-21 105.9 103 43.7
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.7e-21 105.5 103 45.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.7e-21 105.5 105 42.9
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.7e-21 105.5 102 45.1
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.7e-21 105.5 146 35.6
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 3.7e-21 105.5 105 44.8
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 3.7e-21 105.5 165 35.2
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.4e-21 104.8 105 42.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.4e-21 104.8 102 45.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 6.4e-21 104.8 133 39.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 6.4e-21 104.8 102 44.1
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.4e-21 104.8 165 35.2
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 6.4e-21 104.8 132 40.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 6.4e-21 104.8 102 44.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 6.4e-21 104.8 102 45.1
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 8.3e-21 104.4 135 36.3
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 8.3e-21 104.4 165 35.2
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 8.3e-21 104.4 136 38.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 8.3e-21 104.4 102 45.1
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-20 104.0 104 44.2
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.1e-20 104.0 134 38.8
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-20 104.0 165 35.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-20 104.0 143 37.1
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.1e-20 104.0 102 44.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.4e-20 103.6 118 41.5
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.4e-20 103.6 138 37.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.4e-20 103.6 152 35.5
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.4e-20 103.6 169 34.9
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.9e-20 103.2 102 44.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.9e-20 103.2 102 44.1
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.4e-20 102.8 102 44.1
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.4e-20 102.8 124 39.5
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.4e-20 102.8 102 43.1
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.2e-20 102.4 102 44.1
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.2e-20 102.4 102 45.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.2e-20 102.4 134 38.8
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.2e-20 102.4 165 34.5
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.2e-20 102.4 103 42.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.1e-20 102.1 102 44.1
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.1e-20 102.1 122 41.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 4.1e-20 102.1 102 43.1
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.1e-20 102.1 102 43.1
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.1e-20 102.1 102 44.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 5.4e-20 101.7 102 44.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 5.4e-20 101.7 102 43.1
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 5.4e-20 101.7 102 45.1
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 7.0e-20 101.3 117 40.2
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 7.0e-20 101.3 102 43.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 7.0e-20 101.3 102 44.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 9.2e-20 100.9 165 34.5
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.2e-19 100.5 122 39.3
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.2e-19 100.5 103 41.7
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.6e-19 100.1 117 37.6
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.6e-19 100.1 102 43.1
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.6e-19 100.1 102 43.1
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.6e-19 100.1 102 43.1
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.0e-19 99.8 102 43.1
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.5e-19 99.0 116 39.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 4.6e-19 98.6 102 43.1
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 4.6e-19 98.6 102 44.1
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 6.0e-19 98.2 102 42.2
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 6.0e-19 98.2 103 39.8
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 7.8e-19 97.8 102 43.1
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.0e-18 97.4 101 42.6
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.0e-18 97.4 102 42.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.7e-18 96.7 102 42.2
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.7e-18 96.7 109 43.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 2.3e-18 96.3 126 38.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 3.9e-18 95.5 102 43.1
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 3.9e-18 95.5 103 41.7
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.0e-18 95.1 102 43.1
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 5.0e-18 95.1 102 40.2
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-17 94.0 133 36.8
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.9e-17 93.2 102 42.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 2.8e-16 89.4 103 36.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.7e-16 88.6 130 34.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 6.2e-16 88.2 153 31.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 8.1e-16 87.8 99 38.4
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.8e-15 86.7 138 32.6
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 8.9e-15 84.3 97 39.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 8.9e-15 84.3 143 32.2
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-14 84.0 90 41.1
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.9e-13 78.6 171 28.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 5.4e-12 75.1 95 37.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.4e-12 75.1 66 47.0
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.6e-11 72.0 233 24.5
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.5e-09 66.2 116 34.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.3e-09 65.9 63 42.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.3e-09 65.5 63 46.0
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.6e-08 63.5 59 44.1
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.3e-07 59.7 58 44.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.2e-07 58.5 59 42.4
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.6e-06 56.2 59 40.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.4e-06 55.8 95 35.8


User provided reference genes

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