Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 6.8e-187 657.1 322 100.0
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 6.8e-187 657.1 322 100.0
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.0e-77 293.5 322 45.3
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.7e-77 292.0 322 45.3
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 9.8e-77 291.2 320 43.1
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 1.7e-76 290.4 322 43.8
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 2.8e-76 289.7 330 43.6
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 3.7e-76 289.3 324 43.2
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 3.7e-76 289.3 320 43.8
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 4.9e-76 288.9 330 43.6
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 6.3e-76 288.5 320 45.3
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.4e-75 287.3 314 43.9
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.4e-75 287.3 322 44.1
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 2.4e-75 286.6 316 44.0
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.4e-75 286.6 322 45.0
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.4e-75 286.6 321 44.2
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 4.1e-75 285.8 320 45.3
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 4.1e-75 285.8 322 43.5
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 4.1e-75 285.8 316 44.3
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.1e-75 285.8 318 44.0
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 5.4e-75 285.4 316 44.6
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.0e-75 285.0 322 43.5
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 7.0e-75 285.0 318 44.7
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 9.2e-75 284.6 328 42.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 9.2e-75 284.6 322 43.5
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.2e-74 284.3 322 44.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.2e-74 284.3 318 43.7
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.2e-74 284.3 316 43.0
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.6e-74 283.9 320 43.8
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 2.0e-74 283.5 316 43.4
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 2.0e-74 283.5 324 43.8
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.7e-74 283.1 325 43.7
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 2.7e-74 283.1 315 42.9
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 2.7e-74 283.1 319 43.3
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.7e-74 283.1 336 43.5
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.7e-74 283.1 318 44.3
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.5e-74 282.7 314 43.3
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 3.5e-74 282.7 320 44.7
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 3.5e-74 282.7 322 44.1
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 4.5e-74 282.3 318 43.7
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 5.9e-74 282.0 322 43.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 5.9e-74 282.0 328 42.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 7.7e-74 281.6 324 42.6
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.0e-73 281.2 328 42.4
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 1.0e-73 281.2 322 44.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.0e-73 281.2 326 42.6
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.0e-73 281.2 329 41.9
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 1.3e-73 280.8 317 43.5
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 2.9e-73 279.6 321 43.3
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 3.8e-73 279.3 316 42.7
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 5.0e-73 278.9 320 42.8
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 5.0e-73 278.9 319 42.9
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 6.6e-73 278.5 320 42.5
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 6.6e-73 278.5 318 42.1
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 6.6e-73 278.5 320 41.6
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.6e-73 278.5 322 42.5
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 8.6e-73 278.1 328 42.7
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-72 277.7 320 42.5
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-72 277.3 320 42.2
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.5e-72 277.3 322 42.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.9e-72 276.9 324 42.3
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.9e-72 276.9 322 42.2
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.9e-72 276.9 322 42.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.9e-72 276.9 322 42.9
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.5e-72 276.6 316 44.3
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 2.5e-72 276.6 316 42.7
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 2.5e-72 276.6 323 43.0
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.5e-72 276.6 322 42.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 2.5e-72 276.6 322 41.9
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 3.3e-72 276.2 322 42.2
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 3.3e-72 276.2 322 42.2
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 4.3e-72 275.8 321 42.1
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 7.3e-72 275.0 322 41.6
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 7.3e-72 275.0 322 41.9
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 9.5e-72 274.6 319 42.0
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 9.5e-72 274.6 319 42.0
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 9.5e-72 274.6 319 42.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 9.5e-72 274.6 322 41.9
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 1.2e-71 274.2 322 41.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.2e-71 274.2 322 41.9
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.6e-71 273.9 322 41.9
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 2.1e-71 273.5 323 42.1
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 4.7e-71 272.3 322 43.5
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 6.1e-71 271.9 317 40.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 6.4e-68 261.9 359 39.3
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 5.4e-67 258.8 346 38.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.0e-66 256.9 302 42.7
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.0e-66 256.9 302 42.1
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.3e-65 254.2 285 44.2
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.3e-65 253.4 292 43.5
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 8.6e-65 251.5 311 41.5
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 3.6e-63 246.1 274 44.2
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.0e-62 244.6 270 46.3
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.8e-62 243.8 272 43.8
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.5e-61 240.7 274 42.7
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 7.0e-59 231.9 327 38.8
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.1e-56 224.6 269 41.3
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.1e-55 220.3 265 42.6
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 6.2e-55 218.8 275 40.0
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.1e-54 218.0 342 37.1
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 7.8e-50 201.8 273 38.8
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.1e-46 191.4 146 58.2
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 6.8e-46 188.7 247 39.3
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 3.9e-41 172.9 290 35.5
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.6e-40 169.1 122 59.8
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-35 154.5 261 36.8
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 4.2e-35 152.9 223 37.2
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 7.1e-35 152.1 388 30.4
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 9.3e-35 151.8 227 36.1
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-32 144.4 227 36.6
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 4.8e-31 139.4 265 31.7
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.8e-30 137.5 157 45.9
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 9.0e-30 135.2 94 63.8
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.6e-21 107.1 67 68.7
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 2.4e-19 100.5 173 34.1
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 7.1e-19 99.0 79 54.4
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 8.1e-15 85.5 122 34.4
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 2.1e-10 70.9 276 24.6
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 1.8e-09 67.8 89 38.2
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.8e-09 67.8 71 43.7
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 3.0e-09 67.0 278 23.7
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.0e-09 67.0 277 24.2
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 3.9e-09 66.6 275 24.4
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 5.1e-09 66.2 275 24.4
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 5.1e-09 66.2 277 24.2
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 1.1e-08 65.1 275 24.7
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 1.1e-08 65.1 280 24.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 2.1e-07 60.8 276 25.7
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 6.3e-07 59.3 276 23.9
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 6.3e-07 59.3 276 23.6
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 1.1e-06 58.5 276 23.6
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 2.4e-06 57.4 46 54.3
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 9.0e-06 55.5 74 36.5


User provided reference genes

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