Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G202 Micromonas commoda HOM05D026284 ORTHO05D034559 0.0e+00 1570.8 759 100.0
MCO01G367 Micromonas commoda HOM05D026284 ORTHO05D034559 0.0e+00 1130.9 573 96.3
Cre07.g322900 Chlamydomonas reinhardtii HOM05D026284 ORTHO05D007146 5.7e-43 180.3 458 28.4
Cre03.g174950 Chlamydomonas reinhardtii HOM05D026284 ORTHO05D034559 6.8e-20 103.6 210 31.9
Cre10.g463600 Chlamydomonas reinhardtii HOM05D002249 ORTHO05D002443 8.1e-13 80.1 276 26.8
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.0e-11 75.5 223 25.6
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 7.6e-11 73.6 215 28.8
CARHR137490 Cardamine hirsuta HOM05D004750 ORTHO05D006207 1.1e-09 69.7 354 22.9
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 1.1e-09 69.7 222 24.3
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 1.4e-09 69.3 369 24.1
arahy.Tifrunner.gnm1.ann1.ILR90A Arachis hypogaea HOM05D005970 ORTHO05D007146 1.9e-09 68.9 209 26.3
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 1.9e-09 68.9 219 27.4
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 2.4e-09 68.6 229 25.8
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 3.2e-09 68.2 292 23.3
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 3.2e-09 68.2 227 26.0
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 3.2e-09 68.2 333 22.5
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 4.1e-09 67.8 223 24.2
AT2G42450 Arabidopsis thaliana HOM05D004750 ORTHO05D006207 5.4e-09 67.4 348 23.9
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 5.4e-09 67.4 223 24.7
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 5.4e-09 67.4 223 24.2
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 5.4e-09 67.4 224 25.4
BraA05t19288Z Brassica rapa HOM05D004750 ORTHO05D006207 7.1e-09 67.0 351 23.4
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 9.2e-09 66.6 332 25.3
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 1.2e-08 66.2 334 24.6
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 1.2e-08 66.2 236 24.6
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 1.2e-08 66.2 232 25.4
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 1.6e-08 65.9 216 26.9
C04p03600 Brassica napus HOM05D004750 ORTHO05D006207 1.6e-08 65.9 351 23.6
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 1.6e-08 65.9 354 24.0
BolC4t21995H Brassica oleracea HOM05D004750 ORTHO05D006207 1.6e-08 65.9 351 23.6
Mapoly0124s0004 Marchantia polymorpha HOM05D002249 ORTHO05D031213 1.6e-08 65.9 185 29.2
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 1.6e-08 65.9 202 26.2
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 2.1e-08 65.5 217 27.2
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 2.1e-08 65.5 238 24.4
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 2.1e-08 65.5 226 24.8
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 2.1e-08 65.5 318 22.6
AagrBONN_evm.TU.Sc2ySwM_368.857 Anthoceros agrestis HOM05D005970 ORTHO05D007146 2.7e-08 65.1 219 28.8
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 2.7e-08 65.1 212 25.9
Sc22g0002260 Simmondsia chinensis HOM05D005970 ORTHO05D007146 2.7e-08 65.1 224 25.0
A05p02980 Brassica napus HOM05D004750 ORTHO05D006207 3.5e-08 64.7 345 23.8
Mapoly0007s0153 Marchantia polymorpha HOM05D004750 ORTHO05D006207 3.5e-08 64.7 345 24.1
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 3.5e-08 64.7 349 23.5
AagrBONN_evm.TU.Sc2ySwM_368.849 Anthoceros agrestis HOM05D005970 ORTHO05D007146 4.6e-08 64.3 219 28.8
AL4G40900 Arabidopsis lyrata HOM05D004750 ORTHO05D006207 4.6e-08 64.3 348 23.0
Eucgr.A00211 Eucalyptus grandis HOM05D005970 ORTHO05D007146 4.6e-08 64.3 229 24.9
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 4.6e-08 64.3 229 23.1
CSS0022255 Camellia sinensis var. sinensis HOM05D004750 ORTHO05D006207 7.8e-08 63.5 343 23.3
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 1.0e-07 63.2 348 23.3
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 1.0e-07 63.2 236 25.0
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 1.0e-07 63.2 223 26.5
AUR62024737 Chenopodium quinoa HOM05D004750 ORTHO05D006207 2.3e-07 62.0 346 23.4
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 2.3e-07 62.0 236 24.6
ATR0680G188 Amborella trichopoda HOM05D004750 ORTHO05D006207 3.0e-07 61.6 348 24.1
EL10Ac5g10422 Beta vulgaris HOM05D004750 ORTHO05D006207 3.0e-07 61.6 341 23.2
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 3.0e-07 61.6 191 26.7
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 3.0e-07 61.6 223 24.2
CsaV3_6G003170 Cucumis sativus L. HOM05D005970 ORTHO05D007146 3.0e-07 61.6 275 22.2
Pp3c6_14360 Physcomitrium patens HOM05D005970 ORTHO05D007146 3.0e-07 61.6 219 23.7
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 3.0e-07 61.6 232 24.1
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 3.0e-07 61.6 334 20.7
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 3.9e-07 61.2 347 24.8
SMO337G0034 Selaginella moellendorffii HOM05D005970 ORTHO05D007146 3.9e-07 61.2 204 27.9
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 5.1e-07 60.8 194 26.3
BraA10t42716Z Brassica rapa HOM05D005970 ORTHO05D007146 5.1e-07 60.8 191 24.6
Lsat_1_v5_gn_4_37800 Lactuca sativa HOM05D005970 ORTHO05D007146 5.1e-07 60.8 201 24.4
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 6.6e-07 60.5 200 25.0
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 6.6e-07 60.5 194 26.3
Glyma.01G012800 Glycine max HOM05D002249 ORTHO05D002443 6.6e-07 60.5 207 27.1
Potri.005G222000 Populus trichocarpa HOM05D004750 ORTHO05D006207 6.6e-07 60.5 200 27.0
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 6.6e-07 60.5 221 22.6
HPP92_012645 Vanilla planifolia HOM05D004599 ORTHO05D005564 6.6e-07 60.5 148 30.4
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 8.6e-07 60.1 241 26.1
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 8.6e-07 60.1 194 27.3
ECA234G4469 Erigeron canadensis HOM05D005970 ORTHO05D007146 8.6e-07 60.1 202 24.8
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 8.6e-07 60.1 215 25.6
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 1.1e-06 59.7 242 25.2
Eucgr.B01530 Eucalyptus grandis HOM05D004750 ORTHO05D006207 1.1e-06 59.7 364 23.4
Mapoly0123s0015 Marchantia polymorpha HOM05D005970 ORTHO05D007146 1.1e-06 59.7 247 22.3
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 1.5e-06 59.3 194 26.3
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 1.5e-06 59.3 194 26.3
CANSAT80G1971 Cannabis sativa HOM05D005970 ORTHO05D007146 1.5e-06 59.3 225 22.7
MBI08_g17320_MAGBIO Magnolia biondii HOM05D005970 ORTHO05D007146 1.5e-06 59.3 202 24.8
ATR0618G312 Amborella trichopoda HOM05D005970 ORTHO05D007146 1.9e-06 58.9 283 24.0
A10p04500 Brassica napus HOM05D005970 ORTHO05D007146 1.9e-06 58.9 191 25.1
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 1.9e-06 58.9 340 22.4
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 1.9e-06 58.9 154 27.9
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 2.5e-06 58.5 228 25.4
Migut.N02195 Erythranthe guttata HOM05D004750 ORTHO05D006207 2.5e-06 58.5 261 25.3
Gohir.A08G189200 Gossypium hirsutum HOM05D004750 ORTHO05D006207 2.5e-06 58.5 333 23.7
Phvul.008G243700 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 2.5e-06 58.5 229 24.5
Potri.002G231567 Populus trichocarpa HOM05D005970 ORTHO05D007146 2.5e-06 58.5 98 33.7
Sabra05G0170600 Salix brachista HOM05D004750 ORTHO05D006207 2.5e-06 58.5 200 26.5
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 3.3e-06 58.2 344 24.1
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 4.3e-06 57.8 201 25.9
CAN.G771.23 Capsicum annuum HOM05D004750 ORTHO05D006207 4.3e-06 57.8 260 26.2
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 4.3e-06 57.8 225 23.1
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 4.3e-06 57.8 228 25.0
AagrBONN_evm.TU.Sc2ySwM_344.532 Anthoceros agrestis HOM05D002249 ORTHO05D031213 5.6e-06 57.4 188 24.5
DCAR_012532 Daucus carota HOM05D004750 ORTHO05D006207 5.6e-06 57.4 200 25.5
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 5.6e-06 57.4 218 24.3
Hma1.2p1_0273F.1_g109910 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 9.6e-06 56.6 201 26.4
GSVIVG01028293001 Vitis vinifera HOM05D004750 ORTHO05D006207 9.6e-06 56.6 258 26.0


User provided reference genes

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