Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G134 Micromonas commoda HOM05D006365 ORTHO05D007893 2.0e-300 1035.0 534 100.0
Cre09.g387050 Chlamydomonas reinhardtii HOM05D006365 ORTHO05D007893 9.9e-66 255.4 427 37.0
Nitab4.5_0004328g0020 Nicotiana tabacum HOM05D006365 ORTHO05D007893 3.4e-58 230.3 404 36.1
CBR_g3113 Chara braunii HOM05D006365 ORTHO05D007893 1.7e-57 228.0 380 38.9
Gohir.A08G061000 Gossypium hirsutum HOM05D006365 ORTHO05D007893 1.7e-57 228.0 377 37.1
Duzib211G0170 Durio zibethinus HOM05D006365 ORTHO05D007893 4.9e-57 226.5 402 36.3
Sopen09g027890 Solanum pennellii HOM05D006365 ORTHO05D007893 4.9e-57 226.5 403 36.0
unitig_22.g5284 Utricularia gibba HOM05D006365 ORTHO05D007893 8.4e-57 225.7 377 36.6
CAN.G1501.1 Capsicum annuum HOM05D006365 ORTHO05D007893 1.1e-56 225.3 380 36.1
MD10G1190800 Malus domestica HOM05D006365 ORTHO05D007893 1.1e-56 225.3 431 34.3
RcHm_v2.0_Chr6g0289161 Rosa chinensis HOM05D006365 ORTHO05D007893 1.1e-56 225.3 399 35.1
arahy.Tifrunner.gnm1.ann1.47C7BL Arachis hypogaea HOM05D006365 ORTHO05D007893 1.9e-56 224.6 403 36.0
arahy.Tifrunner.gnm1.ann1.8IP52C Arachis hypogaea HOM05D006365 ORTHO05D007893 1.9e-56 224.6 403 35.7
Prupe.8G229800 Prunus persica HOM05D006365 ORTHO05D007893 1.9e-56 224.6 421 35.2
PGSC0003DMG400019907 Solanum tuberosum HOM05D006365 ORTHO05D007893 3.2e-56 223.8 402 35.1
COL.COLO4_08271 Corchorus olitorius HOM05D006365 ORTHO05D007893 4.2e-56 223.4 418 36.4
FAN24G0578 Fragaria x ananassa HOM05D006365 ORTHO05D007893 5.4e-56 223.0 382 35.3
THA.LOC104826252 Tarenaya hassleriana HOM05D006365 ORTHO05D007893 7.1e-56 222.6 382 35.9
Lalb_Chr02g0142351 Lupinus albus HOM05D006365 ORTHO05D007893 1.6e-55 221.5 407 34.6
MD05G1203500 Malus domestica HOM05D006365 ORTHO05D007893 1.6e-55 221.5 375 36.5
VMungo0720G1621 Vigna mungo HOM05D006365 ORTHO05D007893 1.6e-55 221.5 404 35.1
FvH4_2g22240 Fragaria vesca HOM05D006365 ORTHO05D007893 2.1e-55 221.1 384 34.9
HPP92_006135 Vanilla planifolia HOM05D006365 ORTHO05D007893 2.1e-55 221.1 378 37.6
Gorai.004G074000 Gossypium raimondii HOM05D006365 ORTHO05D007893 2.7e-55 220.7 377 36.6
CANSAT01G1790 Cannabis sativa HOM05D006365 ORTHO05D007893 4.6e-55 219.9 381 35.4
FAN20G2720 Fragaria x ananassa HOM05D006365 ORTHO05D007893 4.6e-55 219.9 389 35.0
Glyma.10G034000 Glycine max HOM05D006365 ORTHO05D007893 6.0e-55 219.5 414 35.0
Glyma.13G120200 Glycine max HOM05D006365 ORTHO05D007893 7.8e-55 219.2 410 35.9
Migut.D00394 Erythranthe guttata HOM05D006365 ORTHO05D007893 1.3e-54 218.4 422 35.3
FAN15G1626 Fragaria x ananassa HOM05D006365 ORTHO05D007893 1.3e-54 218.4 372 35.5
Lsat_1_v5_gn_9_9520 Lactuca sativa HOM05D006365 ORTHO05D007893 1.7e-54 218.0 375 34.9
Psat6g056320 Pisum sativum HOM05D006365 ORTHO05D007893 1.7e-54 218.0 385 36.1
TWI75G1360 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 1.7e-54 218.0 375 36.0
PGR044G0103 Punica granatum HOM05D006365 ORTHO05D007893 2.3e-54 217.6 404 33.4
Lj5g0002733 Lotus japonicus HOM05D006365 ORTHO05D007893 3.0e-54 217.2 389 35.2
Phvul.007G178600 Phaseolus vulgaris HOM05D006365 ORTHO05D007893 3.0e-54 217.2 418 34.4
TWI12G0027 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 3.9e-54 216.9 376 35.4
Aqoxy5G00306 Aquilegia oxysepala HOM05D006365 ORTHO05D007893 6.6e-54 216.1 443 33.0
TPR.G9050 Trifolium pratense HOM05D006365 ORTHO05D007893 6.6e-54 216.1 385 35.8
Cc01_g18670 Coffea canephora HOM05D006365 ORTHO05D007893 8.7e-54 215.7 379 36.7
Eucgr.K03306 Eucalyptus grandis HOM05D006365 ORTHO05D007893 8.7e-54 215.7 365 35.9
Medtr1g070375 Medicago truncatula HOM05D006365 ORTHO05D007893 8.7e-54 215.7 401 34.2
Potri.005G220400 Populus trichocarpa HOM05D006365 ORTHO05D007893 8.7e-54 215.7 385 35.3
Thecc.01G264700 Theobroma cacao HOM05D006365 ORTHO05D007893 8.7e-54 215.7 413 35.6
EL10Ac5g10447 Beta vulgaris HOM05D006365 ORTHO05D007893 1.1e-53 215.3 404 33.4
Nn1g02631 Nelumbo nucifera HOM05D006365 ORTHO05D007893 1.1e-53 215.3 404 35.4
Potri.002G042700 Populus trichocarpa HOM05D006365 ORTHO05D007893 1.1e-53 215.3 376 36.2
ATR0665G646 Amborella trichopoda HOM05D006365 ORTHO05D007893 1.5e-53 214.9 374 36.6
MSTRG.18301 Avicennia marina HOM05D006365 ORTHO05D007893 1.9e-53 214.5 375 36.3
Manes.01G200300 Manihot esculenta HOM05D006365 ORTHO05D007893 1.9e-53 214.5 418 35.2
SEGI_04676 Sequoiadendron giganteum HOM05D006365 ORTHO05D007893 1.9e-53 214.5 372 35.2
Rhsim13G0031800 Rhododendron simsii HOM05D006365 ORTHO05D007893 2.5e-53 214.2 405 33.8
Nitab4.5_0000187g0360 Nicotiana tabacum HOM05D006365 ORTHO05D007893 3.3e-53 213.8 421 34.4
ClCG09G007650 Citrullus lanatus HOM05D006365 ORTHO05D007893 7.3e-53 212.6 428 33.2
QL04p081293 Quercus lobata HOM05D006365 ORTHO05D007893 7.3e-53 212.6 387 33.6
CSS0009937 Camellia sinensis var. sinensis HOM05D006365 ORTHO05D007893 9.6e-53 212.2 374 35.0
Cfa002346 Carpinus fangiana HOM05D006365 ORTHO05D007893 9.6e-53 212.2 374 35.6
Os03g0164700 Oryza sativa ssp. japonica HOM05D006365 ORTHO05D007893 9.6e-53 212.2 375 36.3
AUR62032234 Chenopodium quinoa HOM05D006365 ORTHO05D007893 1.6e-52 211.5 380 33.9
Sabra05G0169100 Salix brachista HOM05D006365 ORTHO05D007893 1.6e-52 211.5 385 34.5
TAR362G0809 Trochodendron aralioides HOM05D006365 ORTHO05D007893 1.6e-52 211.5 374 36.9
Carub.0001s0606 Capsella rubella HOM05D006365 ORTHO05D007893 2.8e-52 210.7 380 35.3
SGA_v2.0_scaffold1G00596 Striga asiatica HOM05D006365 ORTHO05D007893 2.8e-52 210.7 461 33.4
AUR62011919 Chenopodium quinoa HOM05D006365 ORTHO05D007893 3.6e-52 210.3 365 34.2
Sed0004051 Sechium edule HOM05D006365 ORTHO05D007893 4.8e-52 209.9 379 34.0
GSVIVG01000761001 Vitis vinifera HOM05D006365 ORTHO05D007893 8.1e-52 209.1 375 35.5
Dinv22456 Davidia involucrata HOM05D006365 ORTHO05D007893 1.1e-51 208.8 409 34.2
HanXRQChr10g0281321 Helianthus annuus HOM05D006365 ORTHO05D007893 1.1e-51 208.8 380 34.5
MELO3C015749.2 Cucumis melo HOM05D006365 ORTHO05D007893 1.4e-51 208.4 398 34.4
vmacro02635 Vaccinium macrocarpon HOM05D006365 ORTHO05D007893 1.8e-51 208.0 440 31.4
CARHR006420 Cardamine hirsuta HOM05D006365 ORTHO05D007893 2.4e-51 207.6 379 34.8
Thhalv10007491m.g Eutrema salsugineum HOM05D006365 ORTHO05D007893 2.4e-51 207.6 374 36.1
CsaV3_7G027480 Cucumis sativus L. HOM05D006365 ORTHO05D007893 3.1e-51 207.2 398 34.4
CSS0000446 Camellia sinensis var. sinensis HOM05D006365 ORTHO05D007893 4.0e-51 206.8 374 34.8
Hund09578 Selenicereus undatus HOM05D006365 ORTHO05D007893 4.0e-51 206.8 379 34.8
Gorai.007G143300 Gossypium raimondii HOM05D006365 ORTHO05D007893 5.3e-51 206.5 406 34.7
AL1G16740 Arabidopsis lyrata HOM05D006365 ORTHO05D007893 6.9e-51 206.1 374 35.6
BcaB02g06753 Brassica carinata HOM05D006365 ORTHO05D007893 6.9e-51 206.1 374 35.3
Ciclev10019917m.g Citrus clementina HOM05D006365 ORTHO05D007893 6.9e-51 206.1 375 34.9
SHI09906 Sapria himalayana HOM05D006365 ORTHO05D007893 9.0e-51 205.7 375 35.2
Gohir.A11G128200 Gossypium hirsutum HOM05D006365 ORTHO05D007893 1.5e-50 204.9 407 34.4
PSO832G0319 Papaver somniferum HOM05D006365 ORTHO05D007893 2.0e-50 204.5 420 32.6
Gohir.D11G134100 Gossypium hirsutum HOM05D006365 ORTHO05D007893 2.6e-50 204.1 407 34.4
Sp1g05460 Schrenkiella parvula HOM05D006365 ORTHO05D007893 2.6e-50 204.1 375 36.0
THA.LOC104800808 Tarenaya hassleriana HOM05D006365 ORTHO05D007893 3.4e-50 203.8 385 34.3
FAN27G2025 Fragaria x ananassa HOM05D006365 ORTHO05D007893 4.4e-50 203.4 399 32.8
PSO210G3674 Papaver somniferum HOM05D006365 ORTHO05D007893 4.4e-50 203.4 373 34.6
BraA10t42796Z Brassica rapa HOM05D006365 ORTHO05D007893 5.8e-50 203.0 375 35.5
A10p05310 Brassica napus HOM05D006365 ORTHO05D007893 7.6e-50 202.6 375 35.5
Gohir.D08G070250 Gossypium hirsutum HOM05D006365 ORTHO05D007893 9.9e-50 202.2 387 34.4
AT1G06730 Arabidopsis thaliana HOM05D006365 ORTHO05D007893 2.2e-49 201.1 381 34.1
Sc17g0000830 Simmondsia chinensis HOM05D006365 ORTHO05D007893 2.9e-49 200.7 366 35.2
Atru.chr5.1605 Acer truncatum HOM05D006365 ORTHO05D007893 6.4e-49 199.5 374 34.0
C05p04910 Brassica napus HOM05D006365 ORTHO05D007893 1.4e-48 198.4 377 35.5
Peaxi162Scf00719g00049 Petunia axillaris HOM05D006365 ORTHO05D007893 1.4e-48 198.4 372 34.7
Lj2A1156T49 Lonicera japonica HOM05D006365 ORTHO05D007893 2.4e-48 197.6 425 32.2
BolC5t29263H Brassica oleracea HOM05D006365 ORTHO05D007893 4.2e-48 196.8 377 35.0
CiPaw.03G259200 Carya illinoinensis HOM05D006365 ORTHO05D007893 4.2e-48 196.8 341 35.8
Ca_09701_v3 Cicer arietinum L. HOM05D006365 ORTHO05D007893 4.2e-48 196.8 426 32.9
Actinidia33762 Actinidia chinensis HOM05D006365 ORTHO05D007893 9.3e-48 195.7 314 36.3
CDE02G1033 Ceratophyllum demersum HOM05D006365 ORTHO05D007893 1.2e-47 195.3 337 35.3
Hma1.2p1_1029F.1_g249750 Hydrangea macrophylla HOM05D006365 ORTHO05D007893 2.7e-47 194.1 376 33.5
DCAR_018456 Daucus carota HOM05D006365 ORTHO05D007893 1.7e-46 191.4 374 34.0
Haze_24555 Corylus avellana HOM05D006365 ORTHO05D007893 9.6e-45 185.7 452 30.1
Aa31LG1G7780 Aethionema arabicum HOM05D006365 ORTHO05D007893 2.8e-44 184.1 426 31.7
Dinv34587 Davidia involucrata HOM05D006365 ORTHO05D007893 3.6e-44 183.7 411 33.6
Lj1A60T61 Lonicera japonica HOM05D006365 ORTHO05D007893 1.4e-43 181.8 386 32.6
DCAR_007340 Daucus carota HOM05D006365 ORTHO05D007893 1.2e-42 178.7 378 32.3
Cpa.g.sc52.148 Carica papaya HOM05D006365 ORTHO05D007893 5.8e-42 176.4 338 33.1
BcaC05g24646 Brassica carinata HOM05D006365 ORTHO05D007893 1.3e-41 175.3 332 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2414 Anthoceros agrestis HOM05D006365 ORTHO05D007893 2.3e-38 164.5 227 37.9
SalBow4G1819 Salvia bowleyana HOM05D006365 ORTHO05D007893 1.9e-37 161.4 369 32.5
MBI11_g20313_MAGBIO Magnolia biondii HOM05D006365 ORTHO05D007893 9.6e-37 159.1 230 37.4
PRCOL_00006866 Prasinoderma coloniale HOM05D006365 ORTHO05D007893 2.4e-35 154.5 475 29.1
TAR633G0237 Trochodendron aralioides HOM05D006365 ORTHO05D007893 4.0e-35 153.7 224 36.2
MBI11_g09868_MAGBIO Magnolia biondii HOM05D006365 ORTHO05D007893 1.2e-34 152.1 340 33.2
SMO117G0162 Selaginella moellendorffii HOM05D006365 ORTHO05D007893 2.6e-34 151.0 221 38.5
Solyc09g066130.4 Solanum lycopersicum HOM05D006365 ORTHO05D007893 3.9e-30 137.1 193 37.3
Zm00001eb004990 Zea mays HOM05D006365 ORTHO05D007893 3.4e-18 97.4 250 30.8
Nn3g19548 Nelumbo nucifera HOM05D006365 ORTHO05D007893 2.2e-09 68.2 167 34.7
CBR_g3800 Chara braunii HOM05D000559 ORTHO05D000596 5.0e-09 67.0 391 26.3
PGSC0003DMG400026916 Solanum tuberosum HOM05D000559 ORTHO05D000596 8.5e-09 66.2 337 26.1
CBR_g3802 Chara braunii HOM05D000559 ORTHO05D000596 1.1e-08 65.9 346 27.5
Eucgr.A00095 Eucalyptus grandis HOM05D000559 ORTHO05D000596 4.2e-08 63.9 322 26.7
AUR62016543 Chenopodium quinoa HOM05D000559 ORTHO05D000596 7.2e-08 63.2 314 24.8
Duzib175G0001 Durio zibethinus HOM05D000559 ORTHO05D000596 7.2e-08 63.2 326 28.5
Ca_10814_v3 Cicer arietinum L. HOM05D000559 ORTHO05D000596 1.2e-07 62.4 324 26.5
Duzib151G1120 Durio zibethinus HOM05D000559 ORTHO05D000596 1.6e-07 62.0 326 28.2
Lalb_Chr06g0160881 Lupinus albus HOM05D000559 ORTHO05D000596 1.6e-07 62.0 371 24.8
Phvul.007G065200 Phaseolus vulgaris HOM05D000559 ORTHO05D000596 2.1e-07 61.6 370 23.8
SalBow6G0297 Salvia bowleyana HOM05D000559 ORTHO05D000596 2.1e-07 61.6 338 24.9
SEGI_01492 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 3.6e-07 60.8 338 27.2
arahy.Tifrunner.gnm1.ann1.4ZP1HR Arachis hypogaea HOM05D000559 ORTHO05D000596 4.7e-07 60.5 405 24.2
CANSAT78G0951 Cannabis sativa HOM05D000559 ORTHO05D000596 4.7e-07 60.5 322 25.2
Duzib212G0129 Durio zibethinus HOM05D000559 ORTHO05D000596 6.1e-07 60.1 325 27.4
Medtr1g101950 Medicago truncatula HOM05D000559 ORTHO05D000596 6.1e-07 60.1 323 25.7
TWI23G0019 Tripterygium wilfordii HOM05D006365 ORTHO05D007893 6.1e-07 60.1 98 35.7
Ciclev10021105m.g Citrus clementina HOM05D000559 ORTHO05D000596 7.9e-07 59.7 322 25.5
Lj5g0005124 Lotus japonicus HOM05D000559 ORTHO05D000596 7.9e-07 59.7 371 23.5
THA.LOC104806478 Tarenaya hassleriana HOM05D000559 ORTHO05D000596 7.9e-07 59.7 332 26.8
arahy.Tifrunner.gnm1.ann1.FS0NK9 Arachis hypogaea HOM05D000559 ORTHO05D000596 1.0e-06 59.3 405 24.2
Gohir.A09G211625 Gossypium hirsutum HOM05D000559 ORTHO05D000596 1.0e-06 59.3 326 28.2
PSO675G1112 Papaver somniferum HOM05D000559 ORTHO05D000596 1.0e-06 59.3 322 26.7
VMungo0720G0352 Vigna mungo HOM05D000559 ORTHO05D000596 1.0e-06 59.3 383 24.0
CARHR256600 Cardamine hirsuta HOM05D000559 ORTHO05D000596 1.4e-06 58.9 312 25.6
Manes.11G121800 Manihot esculenta HOM05D000559 ORTHO05D000596 1.4e-06 58.9 348 25.3
PSO732G0606 Papaver somniferum HOM05D000559 ORTHO05D000596 1.4e-06 58.9 322 26.7
Aa31LG9G11740 Aethionema arabicum HOM05D000559 ORTHO05D000596 3.0e-06 57.8 330 25.8
DCAR_023946 Daucus carota HOM05D000559 ORTHO05D000596 3.9e-06 57.4 342 24.6
Pp3c6_24560 Physcomitrium patens HOM05D000559 ORTHO05D000596 3.9e-06 57.4 389 23.7
Atru.chr13.2645 Acer truncatum HOM05D000559 ORTHO05D000596 5.1e-06 57.0 356 24.4
SpUn0372_0010 Schrenkiella parvula HOM05D000559 ORTHO05D000596 5.1e-06 57.0 351 25.9
SEGI_01444 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 6.7e-06 56.6 340 24.4
Dinv22747 Davidia involucrata HOM05D000559 ORTHO05D000596 8.8e-06 56.2 322 25.5
Rhsim09G0025300 Rhododendron simsii HOM05D000559 ORTHO05D000596 8.8e-06 56.2 322 25.2
TWI15G0403 Tripterygium wilfordii HOM05D000559 ORTHO05D000596 8.8e-06 56.2 342 24.3


User provided reference genes

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