Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.2e-138 496.5 253 100.0
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.1e-42 176.8 192 54.2
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.8e-42 176.4 153 61.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-41 174.5 176 55.7
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-41 173.7 179 55.3
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-41 173.7 176 55.7
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-41 173.3 179 54.7
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 3.0e-41 172.9 179 55.3
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.0e-41 172.6 179 54.7
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 6.8e-41 171.8 155 59.4
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.5e-40 170.6 186 52.7
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.5e-40 170.6 156 58.3
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.6e-40 169.9 157 57.3
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.6e-40 169.9 157 57.3
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 5.8e-40 168.7 194 54.6
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 5.8e-40 168.7 161 56.5
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 7.5e-40 168.3 157 56.7
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.7e-39 167.2 157 58.0
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 1.7e-39 167.2 156 61.5
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.2e-39 166.8 152 56.6
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 2.9e-39 166.4 156 57.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 3.7e-39 166.0 157 57.3
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 6.4e-39 165.2 154 58.4
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 6.4e-39 165.2 156 56.4
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 6.4e-39 165.2 164 56.1
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.1e-38 164.5 186 51.1
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.1e-38 164.5 202 47.5
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.8e-38 163.7 157 56.7
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.8e-38 163.7 231 43.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 1.8e-38 163.7 154 57.1
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 2.4e-38 163.3 182 50.5
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 3.2e-38 162.9 189 50.3
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 5.4e-38 162.2 157 56.1
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.4e-38 162.2 157 55.4
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 5.4e-38 162.2 154 57.1
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 7.0e-38 161.8 155 56.8
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 7.0e-38 161.8 157 54.8
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 7.0e-38 161.8 157 56.1
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 9.2e-38 161.4 187 49.2
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 9.2e-38 161.4 160 54.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 9.2e-38 161.4 180 51.1
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 1.2e-37 161.0 155 56.8
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.2e-37 161.0 187 49.2
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.2e-37 161.0 186 48.9
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.2e-37 161.0 157 54.1
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.6e-37 160.6 155 56.8
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.6e-37 160.6 148 56.1
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.6e-37 160.6 191 47.1
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 1.6e-37 160.6 154 57.8
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 2.0e-37 160.2 155 55.5
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 2.0e-37 160.2 156 57.1
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 2.0e-37 160.2 186 49.5
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.7e-37 159.8 154 55.8
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.7e-37 159.8 163 54.6
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.7e-37 159.8 163 54.6
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 3.5e-37 159.5 155 56.8
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.5e-37 159.5 185 49.2
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 3.5e-37 159.5 154 56.5
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-37 159.5 157 54.1
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 3.5e-37 159.5 157 54.1
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 3.5e-37 159.5 181 48.6
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 4.6e-37 159.1 182 49.5
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 4.6e-37 159.1 180 51.1
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 4.6e-37 159.1 158 54.4
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 4.6e-37 159.1 184 49.5
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 4.6e-37 159.1 156 57.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 6.0e-37 158.7 182 50.0
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 6.0e-37 158.7 163 55.2
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 6.0e-37 158.7 177 52.5
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 6.0e-37 158.7 161 55.9
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 7.8e-37 158.3 192 47.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.0e-36 157.9 180 50.6
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.3e-36 157.5 155 54.2
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.3e-36 157.5 149 56.4
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.3e-36 157.5 188 47.9
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.3e-36 157.5 157 54.8
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.7e-36 157.1 188 47.3
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.7e-36 157.1 148 54.7
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 2.3e-36 156.8 157 54.1
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.0e-36 156.4 148 57.4
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.0e-36 156.4 157 54.8
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 3.9e-36 156.0 154 55.2
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 5.0e-36 155.6 155 54.2
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 5.0e-36 155.6 157 54.1
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 5.0e-36 155.6 157 54.1
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 6.6e-36 155.2 149 57.0
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 8.6e-36 154.8 188 50.0
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 8.6e-36 154.8 157 52.2
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.5e-35 154.1 190 47.4
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 3.3e-35 152.9 188 49.5
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 9.5e-35 151.4 158 53.8
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 9.5e-35 151.4 164 53.0
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.2e-34 151.0 158 52.5
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 2.8e-34 149.8 157 52.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.8e-34 149.8 153 53.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.6e-34 149.4 157 51.6
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 6.2e-34 148.7 154 52.6
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.4e-33 147.5 176 49.4
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.3e-33 146.7 155 53.5
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 2.0e-32 143.7 156 50.0
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 3.2e-30 136.3 167 49.1
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 1.9e-27 127.1 154 47.4
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 4.1e-22 109.4 164 43.3
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.6e-19 99.0 148 42.6
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 4.0e-17 92.8 92 51.1
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 8.9e-17 91.7 112 47.3
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 2.6e-16 90.1 132 43.9
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.4e-16 89.4 106 46.2
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 2.2e-15 87.0 85 55.3
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 3.2e-14 83.2 153 41.2
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.2e-14 83.2 139 34.5
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.7e-12 77.4 184 33.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.5e-08 64.3 148 34.5
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 3.4e-08 63.2 107 38.3


User provided reference genes

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