Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 6.3e-137 490.7 242 100.0
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 4.7e-92 341.7 237 67.5
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 1.4e-91 340.1 237 66.7
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 8.9e-91 337.4 237 65.4
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 1.5e-90 336.7 237 66.2
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.5e-90 336.7 231 66.7
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 2.0e-90 336.3 237 65.8
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 2.0e-90 336.3 237 65.4
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 2.6e-90 335.9 237 66.7
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 2.6e-90 335.9 237 65.0
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 2.6e-90 335.9 237 67.1
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 3.4e-90 335.5 237 66.7
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 4.4e-90 335.1 237 64.6
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 5.8e-90 334.7 237 65.4
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 7.6e-90 334.3 237 66.2
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 9.9e-90 334.0 237 66.7
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 9.9e-90 334.0 237 65.8
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 9.9e-90 334.0 232 67.2
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 1.3e-89 333.6 237 65.8
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.7e-89 333.2 231 65.8
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.7e-89 333.2 237 65.0
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 2.2e-89 332.8 237 65.8
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 2.2e-89 332.8 237 67.1
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 2.9e-89 332.4 232 65.9
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 2.9e-89 332.4 237 65.8
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 2.9e-89 332.4 237 65.4
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 3.8e-89 332.0 237 65.4
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 3.8e-89 332.0 229 68.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 3.8e-89 332.0 238 65.1
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.8e-89 332.0 237 64.6
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 4.9e-89 331.6 242 63.6
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 6.4e-89 331.3 232 67.2
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 6.4e-89 331.3 236 65.3
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 6.4e-89 331.3 232 66.8
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 8.4e-89 330.9 229 68.6
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 8.4e-89 330.9 237 65.0
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 8.4e-89 330.9 232 66.8
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 8.4e-89 330.9 232 67.2
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 1.1e-88 330.5 229 68.1
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 1.1e-88 330.5 229 68.1
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.1e-88 330.5 237 65.0
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 1.4e-88 330.1 234 67.1
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 1.4e-88 330.1 237 63.7
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.4e-88 330.1 232 67.2
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 1.4e-88 330.1 237 67.1
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 1.9e-88 329.7 229 68.1
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.9e-88 329.7 237 65.0
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 1.9e-88 329.7 234 67.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.9e-88 329.7 232 65.5
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 1.9e-88 329.7 232 65.1
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 2.4e-88 329.3 229 67.7
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 2.4e-88 329.3 229 67.7
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.4e-88 329.3 237 65.0
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.4e-88 329.3 237 65.8
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 2.4e-88 329.3 232 66.4
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 2.4e-88 329.3 237 64.1
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 2.4e-88 329.3 237 65.8
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 3.2e-88 328.9 229 67.2
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 3.2e-88 328.9 232 65.9
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 3.2e-88 328.9 232 66.8
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 3.2e-88 328.9 237 65.0
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 4.2e-88 328.6 237 64.6
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 4.2e-88 328.6 237 65.8
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 4.2e-88 328.6 229 67.7
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 5.4e-88 328.2 237 64.1
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 5.4e-88 328.2 229 66.8
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.4e-88 328.2 239 62.3
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 7.1e-88 327.8 229 67.7
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 7.1e-88 327.8 229 67.7
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 7.1e-88 327.8 236 64.8
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 7.1e-88 327.8 229 66.8
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 9.3e-88 327.4 229 67.7
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 9.3e-88 327.4 234 66.2
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 9.3e-88 327.4 237 65.0
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 1.2e-87 327.0 229 67.7
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 1.2e-87 327.0 229 67.7
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 1.2e-87 327.0 232 67.2
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 1.6e-87 326.6 229 66.8
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.6e-87 326.6 237 65.4
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.6e-87 326.6 237 64.1
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 1.6e-87 326.6 235 65.5
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 2.1e-87 326.2 237 65.4
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.1e-87 326.2 232 65.1
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.1e-87 326.2 232 65.1
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 2.1e-87 326.2 237 64.6
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 2.7e-87 325.9 232 65.1
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 2.7e-87 325.9 237 63.7
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 2.7e-87 325.9 237 65.0
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 2.7e-87 325.9 237 64.1
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 3.5e-87 325.5 241 63.9
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 3.5e-87 325.5 237 65.0
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 3.5e-87 325.5 237 65.0
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 4.6e-87 325.1 234 64.1
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 6.0e-87 324.7 232 65.9
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 6.0e-87 324.7 238 64.7
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 6.0e-87 324.7 237 65.4
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 6.0e-87 324.7 239 62.3
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 7.8e-87 324.3 233 64.4
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 7.8e-87 324.3 232 64.7
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 7.8e-87 324.3 237 63.3
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.3e-86 323.6 236 65.7
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.3e-86 323.6 232 66.8
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.7e-86 323.2 232 64.2
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.0e-86 322.4 237 64.6
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 3.0e-86 322.4 237 62.4
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 3.0e-86 322.4 237 64.1
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 3.0e-86 322.4 237 63.3
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.9e-86 322.0 237 64.6
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 3.9e-86 322.0 237 62.9
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 3.9e-86 322.0 237 62.9
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 6.6e-86 321.2 232 65.5
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 6.6e-86 321.2 232 65.5
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 1.1e-85 320.5 237 62.9
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 1.1e-85 320.5 237 62.9
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.5e-85 320.1 235 64.7
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 2.5e-85 319.3 234 63.2
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 4.3e-85 318.5 257 60.3
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 7.3e-85 317.8 232 65.5
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 7.3e-85 317.8 237 63.7
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 7.3e-85 317.8 237 63.3
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 6.2e-84 314.7 233 63.5
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.2e-84 314.7 224 64.7
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 1.1e-83 313.9 226 64.6
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 4.0e-83 312.0 277 56.7
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 4.0e-83 312.0 221 64.7
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 4.0e-83 312.0 271 56.1
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 5.3e-83 311.6 223 65.5
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.5e-82 310.1 212 67.5
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 5.8e-82 308.1 212 67.5
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 7.6e-82 307.8 237 60.8
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 9.9e-82 307.4 236 60.6
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 1.7e-81 306.6 226 65.5
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 2.9e-81 305.8 212 65.6
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 8.4e-81 304.3 270 56.7
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 8.4e-81 304.3 237 60.8
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.2e-80 302.0 241 62.7
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 6.0e-79 298.1 216 63.4
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 7.9e-79 297.7 210 65.2
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 1.3e-78 297.0 205 68.8
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.7e-78 296.6 235 61.3
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 3.0e-78 295.8 226 61.5
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 4.3e-77 292.0 203 65.0
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 1.4e-75 287.0 242 56.6
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 4.0e-75 285.4 205 65.4
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 4.5e-74 282.0 338 45.6
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.1e-72 277.3 241 55.6
Eucgr.E00184 Eucalyptus grandis HOM05D003698 ORTHO05D004320 1.0e-70 270.8 177 70.1
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 1.3e-70 270.4 221 58.8
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 2.3e-70 269.6 186 65.6
CAN.G134.78 Capsicum annuum HOM05D003698 ORTHO05D004320 3.9e-70 268.9 177 69.5
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 2.1e-68 263.1 297 49.5
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 4.6e-63 245.4 180 64.4
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.7e-61 238.4 237 54.0
SEGI_40114 Sequoiadendron giganteum HOM05D003698 ORTHO05D004320 9.6e-61 237.7 153 69.9
Cpa.g.sc170.35 Carica papaya HOM05D003698 ORTHO05D004320 3.2e-56 222.6 144 70.1
Haze_15453 Corylus avellana HOM05D003698 ORTHO05D004320 1.6e-55 220.3 150 66.7
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.3e-54 217.2 210 52.9
Lj9A580G54 Lonicera japonica HOM05D003698 ORTHO05D004320 6.7e-54 214.9 144 66.7
AUR62013874 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.5e-53 213.8 141 69.5
CSS0016921 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 4.8e-52 208.8 133 71.4
HPP92_000764 Vanilla planifolia HOM05D003698 ORTHO05D004320 6.5e-49 198.4 220 48.6
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 2.5e-48 196.4 143 65.0
Haze_05811 Corylus avellana HOM05D003698 ORTHO05D004320 7.2e-48 194.9 146 62.3
FAN03G0966 Fragaria x ananassa HOM05D003698 ORTHO05D004320 1.8e-43 180.3 111 71.2
CSS0047600 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.0e-41 174.5 148 58.8
Cpa.g.c46781 Carica papaya HOM05D003698 ORTHO05D004320 5.0e-33 145.6 94 73.4
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 2.1e-31 140.2 113 61.1
Prupe.8G033900 Prunus persica HOM05D003698 ORTHO05D004320 3.1e-27 126.3 83 67.5
RcHm_v2.0_Chr1g0364561 Rosa chinensis HOM05D003698 ORTHO05D004320 3.1e-27 126.3 94 61.7
CANSAT25G0181 Cannabis sativa HOM05D003698 ORTHO05D004320 1.2e-21 107.8 70 67.1
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.4e-21 105.9 72 61.1
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 4.8e-20 102.4 75 61.3
RcHm_v2.0_Chr4g0404481 Rosa chinensis HOM05D003698 ORTHO05D004320 5.9e-18 95.5 83 56.6
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 1.3e-17 94.4 86 50.0
RcHm_v2.0_Chr5g0045001 Rosa chinensis HOM05D003698 ORTHO05D004320 5.7e-13 79.0 85 51.8
CANSAT11G2537 Cannabis sativa HOM05D003698 ORTHO05D004320 6.3e-12 75.5 45 66.7
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 1.8e-11 73.9 60 58.3
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 1.8e-11 73.9 75 50.7
Hund27303 Selenicereus undatus HOM05D000402 ORTHO05D000263 1.3e-09 67.8 33 87.9
Haze_05812 Corylus avellana HOM05D003698 ORTHO05D004320 8.0e-07 58.5 44 56.8
CSS0029944 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.8e-06 57.4 80 41.2
ClCG03G012620 Citrullus lanatus HOM05D003698 ORTHO05D004320 5.2e-06 55.8 38 60.5
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 5.2e-06 55.8 113 35.4
TAR636G2570 Trochodendron aralioides HOM05D003698 ORTHO05D004320 8.9e-06 55.1 66 42.4


User provided reference genes

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