Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI19_g27984_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D020807 1.7e-85 319.3 163 100.0
MBI19_g20203_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 8.5e-45 184.1 149 69.1
MBI19_g30538_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 4.0e-42 175.3 149 65.8
MBI19_g20951_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 4.2e-28 128.6 151 51.7
MBI16_g11608_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 4.7e-27 125.2 151 49.0
MBI19_g20204_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 2.7e-22 109.4 85 71.8
Lj4P118T48 Lonicera japonica HOM05D000139 ORTHO05D000103 1.9e-20 103.2 151 44.4
Dinv33827 Davidia involucrata HOM05D000139 ORTHO05D000103 3.3e-20 102.4 150 41.3
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.3e-20 102.4 150 42.7
Oeu004413.1 Olea europaea HOM05D000139 ORTHO05D000103 7.3e-20 101.3 162 40.1
Duzib068G0846 Durio zibethinus HOM05D000139 ORTHO05D000103 2.8e-19 99.4 153 40.5
Cc07_g04210 Coffea canephora HOM05D000139 ORTHO05D000103 4.7e-19 98.6 158 40.5
CSS0007544 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 3.1e-18 95.9 151 39.1
CSS0030363 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 3.1e-18 95.9 151 39.1
Atru.chr8.457 Acer truncatum HOM05D000139 ORTHO05D000103 8.9e-18 94.4 151 39.7
Duzib187G0247 Durio zibethinus HOM05D000139 ORTHO05D000103 8.9e-18 94.4 151 39.1
Oeu051019.1 Olea europaea HOM05D000139 ORTHO05D000103 8.9e-18 94.4 156 39.7
Peaxi162Scf00451g00019 Petunia axillaris HOM05D000139 ORTHO05D000103 8.9e-18 94.4 163 38.0
Potri.017G093966 Populus trichocarpa HOM05D000139 ORTHO05D000103 8.9e-18 94.4 150 37.3
Nitab4.5_0002960g0030 Nicotiana tabacum HOM05D000139 ORTHO05D000103 1.2e-17 94.0 161 37.3
Nn3g17455 Nelumbo nucifera HOM05D000139 ORTHO05D000103 1.5e-17 93.6 150 38.7
TAR622G1350 Trochodendron aralioides HOM05D000139 ORTHO05D020807 1.5e-17 93.6 160 37.5
CiPaw.04G055800 Carya illinoinensis HOM05D000139 ORTHO05D000103 2.0e-17 93.2 150 40.7
DCAR_025430 Daucus carota HOM05D000139 ORTHO05D000103 2.6e-17 92.8 152 41.4
CiPaw.03G088700 Carya illinoinensis HOM05D000139 ORTHO05D000103 3.4e-17 92.4 158 39.9
Gohir.A12G182800 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.4e-17 92.4 151 40.4
Gohir.D12G185900 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.4e-17 92.4 151 40.4
Gorai.008G199300 Gossypium raimondii HOM05D000139 ORTHO05D000103 3.4e-17 92.4 151 40.4
Manes.01G095800 Manihot esculenta HOM05D000139 ORTHO05D000103 4.4e-17 92.0 149 40.3
PSO478G2618 Papaver somniferum HOM05D000139 ORTHO05D000103 4.4e-17 92.0 150 38.7
Haze_14432 Corylus avellana HOM05D000139 ORTHO05D000103 7.5e-17 91.3 150 42.7
Hma1.2p1_0481F.1_g162190 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 7.5e-17 91.3 148 37.8
PSO017G1911 Papaver somniferum HOM05D000139 ORTHO05D000103 2.2e-16 89.7 150 38.0
CSS0040012 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D000103 2.9e-16 89.4 151 37.7
Nitab4.5_0001637g0050 Nicotiana tabacum HOM05D000139 ORTHO05D000103 3.7e-16 89.0 158 37.3
Aqoxy3G00491 Aquilegia oxysepala HOM05D000139 ORTHO05D000103 4.9e-16 88.6 149 36.9
Cfa007666 Carpinus fangiana HOM05D000139 ORTHO05D000103 4.9e-16 88.6 150 42.7
QL02p067626 Quercus lobata HOM05D000139 ORTHO05D000103 4.9e-16 88.6 150 41.3
Ciclev10011258m.g Citrus clementina HOM05D000139 ORTHO05D000103 6.4e-16 88.2 149 38.9
COL.COLO4_07029 Corchorus olitorius HOM05D000139 ORTHO05D000103 6.4e-16 88.2 151 37.7
Peaxi162Scf00166g00054 Petunia axillaris HOM05D000139 ORTHO05D000103 1.1e-15 87.4 157 37.6
Prupe.3G255100 Prunus persica HOM05D000139 ORTHO05D000103 1.1e-15 87.4 150 36.0
Gohir.D04G043700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.4e-15 87.0 151 37.7
Gohir.A09G009700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.9e-15 86.7 151 36.4
Thecc.03G102100 Theobroma cacao HOM05D000139 ORTHO05D000103 1.9e-15 86.7 153 37.9
TWI34G1329 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 1.9e-15 86.7 155 36.1
Rhsim10G0049000 Rhododendron simsii HOM05D000139 ORTHO05D000103 2.4e-15 86.3 157 36.9
Thecc.04G095500 Theobroma cacao HOM05D000139 ORTHO05D000103 4.1e-15 85.5 151 36.4
Duzib084G0180 Durio zibethinus HOM05D000139 ORTHO05D000103 5.4e-15 85.1 153 37.9
Lalb_Chr10g0092951 Lupinus albus HOM05D000139 ORTHO05D000103 7.0e-15 84.7 151 35.8
Gohir.A05G372100 Gossypium hirsutum HOM05D000139 ORTHO05D000103 9.2e-15 84.3 151 36.4
Nn4g23431 Nelumbo nucifera HOM05D000139 ORTHO05D000103 9.2e-15 84.3 150 36.7
Nitab4.5_0006731g0020 Nicotiana tabacum HOM05D000139 ORTHO05D000103 9.2e-15 84.3 158 34.8
Rhsim10G0049200 Rhododendron simsii HOM05D000139 ORTHO05D000103 1.6e-14 83.6 165 35.2
Manes.02G054800 Manihot esculenta HOM05D000139 ORTHO05D000103 2.0e-14 83.2 151 37.7
Nitab4.5_0003841g0070 Nicotiana tabacum HOM05D000139 ORTHO05D000103 2.0e-14 83.2 158 34.2
Peaxi162Scf00166g00053 Petunia axillaris HOM05D000139 ORTHO05D000103 2.0e-14 83.2 157 37.6
Actinidia35038 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.7e-14 82.8 150 38.0
Dinv22778 Davidia involucrata HOM05D000139 ORTHO05D000103 2.7e-14 82.8 147 37.4
MSTRG.3002 Avicennia marina HOM05D000139 ORTHO05D000103 3.5e-14 82.4 157 36.9
Gohir.D09G008700 Gossypium hirsutum HOM05D000139 ORTHO05D000103 3.5e-14 82.4 151 35.8
PGSC0003DMG400001454 Solanum tuberosum HOM05D000139 ORTHO05D000103 4.6e-14 82.0 157 35.0
COL.COLO4_06854 Corchorus olitorius HOM05D000139 ORTHO05D000103 6.0e-14 81.6 153 36.6
Phvul.009G201800 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 6.0e-14 81.6 150 34.7
Sopen02g033520 Solanum pennellii HOM05D000139 ORTHO05D000103 6.0e-14 81.6 157 35.0
CANSAT64G1740 Cannabis sativa HOM05D000139 ORTHO05D000103 7.8e-14 81.3 153 39.2
Solyc02g088800.2 Solanum lycopersicum HOM05D000139 ORTHO05D000103 7.8e-14 81.3 157 35.0
Gohir.A09G243400 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.0e-13 80.9 153 36.6
Gorai.012G048800 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.0e-13 80.9 151 36.4
vmacro05636 Vaccinium macrocarpon HOM05D000139 ORTHO05D000103 1.0e-13 80.9 150 38.7
VMungo1309G0592 Vigna mungo HOM05D000139 ORTHO05D000103 1.0e-13 80.9 150 37.3
Dinv17417 Davidia involucrata HOM05D000139 ORTHO05D000103 1.7e-13 80.1 146 34.2
MD17G1059400 Malus domestica HOM05D000139 ORTHO05D000103 1.7e-13 80.1 154 32.5
Lj5C102T9 Lonicera japonica HOM05D000139 ORTHO05D000103 3.0e-13 79.3 150 34.7
Rhsim12G0148500 Rhododendron simsii HOM05D000139 ORTHO05D000103 3.0e-13 79.3 147 39.5
Migut.H00626 Erythranthe guttata HOM05D000139 ORTHO05D000103 3.9e-13 79.0 157 35.0
Gohir.D12G035550 Gossypium hirsutum HOM05D000139 ORTHO05D020807 3.9e-13 79.0 153 35.9
Duzib147G0893 Durio zibethinus HOM05D000139 ORTHO05D000103 5.0e-13 78.6 151 35.1
Lalb_Chr17g0336991 Lupinus albus HOM05D000139 ORTHO05D000103 5.0e-13 78.6 168 34.5
FvH4_6g46900 Fragaria vesca HOM05D000139 ORTHO05D000103 1.1e-12 77.4 152 34.9
FAN09G4150 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.1e-12 77.4 152 34.9
FAN14G3131 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.1e-12 77.4 152 34.9
TWI60G1138 Tripterygium wilfordii HOM05D000139 ORTHO05D000103 1.1e-12 77.4 150 36.7
arahy.Tifrunner.gnm1.ann1.3BME1Z Arachis hypogaea HOM05D000139 ORTHO05D000103 1.5e-12 77.0 166 33.7
Gohir.D09G244100 Gossypium hirsutum HOM05D000139 ORTHO05D000103 1.5e-12 77.0 153 35.3
Gorai.006G268100 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.5e-12 77.0 153 35.3
Medtr7g013770 Medicago truncatula HOM05D000139 ORTHO05D000103 1.9e-12 76.6 173 32.9
Potri.017G093700 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.9e-12 76.6 149 35.6
Cfa019336 Carpinus fangiana HOM05D000139 ORTHO05D000103 2.5e-12 76.3 158 36.7
Glyma.08G245400 Glycine max HOM05D000139 ORTHO05D000103 2.5e-12 76.3 177 32.2
MD09G1066500 Malus domestica HOM05D000139 ORTHO05D000103 3.3e-12 75.9 150 32.0
Atru.chr9.568 Acer truncatum HOM05D000139 ORTHO05D000103 4.3e-12 75.5 148 35.8
FAN05G1832 Fragaria x ananassa HOM05D000139 ORTHO05D000103 4.3e-12 75.5 152 33.6
Psat3g201840 Pisum sativum HOM05D000139 ORTHO05D000103 4.3e-12 75.5 173 31.2
Hma1.2p1_0481F.1_g162160 Hydrangea macrophylla HOM05D000139 ORTHO05D000103 5.6e-12 75.1 151 35.1
Lj1g0024211 Lotus japonicus HOM05D000139 ORTHO05D000103 9.5e-12 74.3 174 32.8
Peaxi162Scf00201g00034 Petunia axillaris HOM05D000139 ORTHO05D000103 9.5e-12 74.3 147 36.1
RcHm_v2.0_Chr2g0165871 Rosa chinensis HOM05D000139 ORTHO05D000103 9.5e-12 74.3 152 35.5
Aqoxy3G00489 Aquilegia oxysepala HOM05D000009 ORTHO05D006588 1.2e-11 73.9 112 39.3
Glyma.04G162400 Glycine max HOM05D000139 ORTHO05D000103 2.1e-11 73.2 147 35.4
Ca_04354_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 2.8e-11 72.8 171 34.5
Lsat_1_v5_gn_4_172461 Lactuca sativa HOM05D000139 ORTHO05D000103 2.8e-11 72.8 158 31.6
VMungo1383G0504 Vigna mungo HOM05D000139 ORTHO05D000103 2.8e-11 72.8 101 43.6
ECA246G1878 Erigeron canadensis HOM05D000139 ORTHO05D000103 3.6e-11 72.4 140 32.1
HanXRQChr17g0546071 Helianthus annuus HOM05D000139 ORTHO05D000103 3.6e-11 72.4 156 31.4
ATR0561G096 Amborella trichopoda HOM05D000139 ORTHO05D000103 4.7e-11 72.0 160 31.9
Manes.02G054900 Manihot esculenta HOM05D000139 ORTHO05D000103 4.7e-11 72.0 151 37.1
QL10p019598 Quercus lobata HOM05D000139 ORTHO05D000103 4.7e-11 72.0 161 35.4
ATR0177G007 Amborella trichopoda HOM05D000139 ORTHO05D000103 6.2e-11 71.6 155 31.6
Manes.06G084400 Manihot esculenta HOM05D000139 ORTHO05D000103 6.2e-11 71.6 148 35.1
Glyma.18G266600 Glycine max HOM05D000139 ORTHO05D000103 8.0e-11 71.2 176 32.4
Phvul.008G033400 Phaseolus vulgaris HOM05D000139 ORTHO05D000103 8.0e-11 71.2 177 31.6
Potri.015G058200 Populus trichocarpa HOM05D000139 ORTHO05D000103 1.1e-10 70.9 156 32.7
PGR004G2842 Punica granatum HOM05D000139 ORTHO05D000103 1.1e-10 70.9 163 31.3
TAR633G0528 Trochodendron aralioides HOM05D000139 ORTHO05D000103 1.1e-10 70.9 151 30.5
CsaV3_1G005990 Cucumis sativus L. HOM05D000139 ORTHO05D000103 1.4e-10 70.5 145 32.4
Glyma.06G203900 Glycine max HOM05D000139 ORTHO05D000103 1.4e-10 70.5 158 34.2
Gorai.006G010500 Gossypium raimondii HOM05D000139 ORTHO05D000103 1.4e-10 70.5 100 40.0
SEGI_11842 Sequoiadendron giganteum HOM05D000139 ORTHO05D000103 1.4e-10 70.5 147 36.1
Lsat_1_v5_gn_3_97401 Lactuca sativa HOM05D000139 ORTHO05D000103 1.8e-10 70.1 171 29.8
Nn3g16482 Nelumbo nucifera HOM05D000139 ORTHO05D000103 1.8e-10 70.1 155 31.0
CARHR153060 Cardamine hirsuta HOM05D000139 ORTHO05D000103 2.3e-10 69.7 157 31.2
Sabra17G0082800 Salix brachista HOM05D000139 ORTHO05D000103 3.1e-10 69.3 149 32.2
Sp2g18000 Schrenkiella parvula HOM05D000139 ORTHO05D000103 3.1e-10 69.3 158 31.6
Carub.0005s0815 Capsella rubella HOM05D000139 ORTHO05D000103 4.0e-10 68.9 158 31.0
HanXRQChr15g0488861 Helianthus annuus HOM05D000139 ORTHO05D000103 5.2e-10 68.6 160 29.4
TAR622G1211 Trochodendron aralioides HOM05D000139 ORTHO05D000103 5.2e-10 68.6 157 29.3
Lalb_Chr04g0258431 Lupinus albus HOM05D000139 ORTHO05D000103 6.8e-10 68.2 106 37.7
CDE10G0948 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 1.2e-09 67.4 100 36.0
Sed0018848 Sechium edule HOM05D000139 ORTHO05D000103 1.5e-09 67.0 146 30.1
MELO3C002031.2 Cucumis melo HOM05D000139 ORTHO05D000103 2.0e-09 66.6 146 31.5
TAR629G2422 Trochodendron aralioides HOM05D000139 ORTHO05D000103 2.0e-09 66.6 155 29.0
PSO017G1705 Papaver somniferum HOM05D000139 ORTHO05D000103 2.6e-09 66.2 152 32.2
TPR.G33443 Trifolium pratense HOM05D000139 ORTHO05D000103 2.6e-09 66.2 172 30.8
AL5G19600 Arabidopsis lyrata HOM05D000139 ORTHO05D000103 3.4e-09 65.9 158 31.0
AT3G29400 Arabidopsis thaliana HOM05D000139 ORTHO05D000103 3.4e-09 65.9 160 28.1
Eucgr.I02032 Eucalyptus grandis HOM05D000139 ORTHO05D000103 3.4e-09 65.9 150 32.0
CAN.G497.105 Capsicum annuum HOM05D000139 ORTHO05D000103 4.4e-09 65.5 154 31.8
HanXRQChr17g0551701 Helianthus annuus HOM05D000139 ORTHO05D000103 4.4e-09 65.5 101 37.6
Actinidia17583 Actinidia chinensis HOM05D000139 ORTHO05D000103 5.8e-09 65.1 111 42.3
Thhalv10003771m.g Eutrema salsugineum HOM05D000139 ORTHO05D000103 7.5e-09 64.7 158 29.7
CDE10G1057 Ceratophyllum demersum HOM05D000058 ORTHO05D000077 9.8e-09 64.3 136 27.9
THA.LOC104805512 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 9.8e-09 64.3 153 31.4
HPP92_026868 Vanilla planifolia HOM05D000139 ORTHO05D000103 9.8e-09 64.3 109 34.9
Ciclev10019254m.g Citrus clementina HOM05D000139 ORTHO05D000103 1.3e-08 63.9 146 31.5
Sc14g0006240 Simmondsia chinensis HOM05D000139 ORTHO05D000103 1.3e-08 63.9 106 40.6
Sc14g0006310 Simmondsia chinensis HOM05D000139 ORTHO05D000103 1.3e-08 63.9 106 40.6
AUR62021556 Chenopodium quinoa HOM05D000139 ORTHO05D000103 1.7e-08 63.5 158 27.2
Haze_07725 Corylus avellana HOM05D000139 ORTHO05D000103 2.2e-08 63.2 99 38.4
GSVIVG01007863001 Vitis vinifera HOM05D000139 ORTHO05D000103 2.2e-08 63.2 117 35.9
Ca_14350_v3 Cicer arietinum L. HOM05D000139 ORTHO05D000103 2.9e-08 62.8 153 31.4
Manes.06G119000 Manihot esculenta HOM05D000139 ORTHO05D000103 2.9e-08 62.8 148 27.0
CDE05G3456 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 3.7e-08 62.4 150 31.3
PGR083G0740 Punica granatum HOM05D000139 ORTHO05D000103 3.7e-08 62.4 152 27.6
THA.LOC104801177 Tarenaya hassleriana HOM05D000139 ORTHO05D000103 4.9e-08 62.0 151 29.8
Aqoxy3G01522 Aquilegia oxysepala HOM05D000139 ORTHO05D000103 6.4e-08 61.6 174 27.6
AUR62008535 Chenopodium quinoa HOM05D000139 ORTHO05D000103 6.4e-08 61.6 153 27.5
ECA232G4904 Erigeron canadensis HOM05D000139 ORTHO05D000103 6.4e-08 61.6 158 28.5
TAR629G2719 Trochodendron aralioides HOM05D000139 ORTHO05D020807 1.4e-07 60.5 84 42.9
Sabra15G0116200 Salix brachista HOM05D000139 ORTHO05D000103 3.2e-07 59.3 147 27.2
PGR044G0639 Punica granatum HOM05D000139 ORTHO05D000103 4.1e-07 58.9 145 26.9
Lsat_1_v5_gn_5_13681 Lactuca sativa HOM05D000139 ORTHO05D000103 5.4e-07 58.5 152 27.6
TPR.G12259 Trifolium pratense HOM05D000139 ORTHO05D000103 7.1e-07 58.2 147 30.6
FvH4_5g13790 Fragaria vesca HOM05D000139 ORTHO05D000103 1.2e-06 57.4 98 36.7
FAN18G0836 Fragaria x ananassa HOM05D000139 ORTHO05D000103 1.2e-06 57.4 98 36.7
Medtr3g025900 Medicago truncatula HOM05D000139 ORTHO05D000103 1.6e-06 57.0 143 29.4
Dinv04883 Davidia involucrata HOM05D000139 ORTHO05D000103 2.1e-06 56.6 148 26.4
Dinv23137 Davidia involucrata HOM05D000139 ORTHO05D000103 2.1e-06 56.6 148 26.4
Gohir.D01G109850 Gossypium hirsutum HOM05D000139 ORTHO05D020807 2.1e-06 56.6 81 42.0
SGA_v2.0_scaffold4G02395 Striga asiatica HOM05D000139 ORTHO05D000103 2.1e-06 56.6 161 29.2
FvH4_5g08200 Fragaria vesca HOM05D000139 ORTHO05D000103 2.7e-06 56.2 150 28.7
PSO801G0494 Papaver somniferum HOM05D000139 ORTHO05D000103 2.7e-06 56.2 105 35.2
FAN18G3730 Fragaria x ananassa HOM05D000139 ORTHO05D000103 3.5e-06 55.8 150 29.3
HanXRQChr16g0497661 Helianthus annuus HOM05D000139 ORTHO05D000103 3.5e-06 55.8 150 28.7
SalBow1G6168 Salvia bowleyana HOM05D000139 ORTHO05D000103 3.5e-06 55.8 153 30.7
BcaB07g30078 Brassica carinata HOM05D000139 ORTHO05D000103 4.6e-06 55.5 156 29.5
MD17G1059600 Malus domestica HOM05D000139 ORTHO05D020807 4.6e-06 55.5 113 29.2
MBI07_g27362_MAGBIO Magnolia biondii HOM05D000139 ORTHO05D000103 6.0e-06 55.1 154 27.9
Prupe.5G151900 Prunus persica HOM05D000139 ORTHO05D000103 7.8e-06 54.7 150 26.7
Thecc.03G128300 Theobroma cacao HOM05D000139 ORTHO05D000103 7.8e-06 54.7 155 23.9


User provided reference genes

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