Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.7e-80 302.8 164 100.0
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.1e-60 236.9 143 82.5
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 4.2e-60 235.0 143 81.1
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.6e-59 233.0 143 80.4
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-59 232.6 143 81.1
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 3.6e-59 231.9 144 83.3
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.1e-59 231.1 143 83.2
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.0e-58 230.3 143 81.1
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.8e-58 229.6 145 80.7
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.8e-58 229.6 145 80.7
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.3e-58 229.2 144 81.2
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 3.0e-58 228.8 143 79.7
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 3.0e-58 228.8 146 77.4
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 4.0e-58 228.4 143 80.4
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 5.2e-58 228.0 143 79.0
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 5.2e-58 228.0 144 80.6
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 5.2e-58 228.0 143 79.0
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 6.8e-58 227.6 144 79.9
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 6.8e-58 227.6 141 79.4
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 8.8e-58 227.3 144 81.9
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.5e-57 226.5 143 79.7
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 2.0e-57 226.1 147 78.2
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.0e-57 226.1 143 80.4
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 2.6e-57 225.7 143 79.7
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 3.4e-57 225.3 143 79.7
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 4.4e-57 224.9 143 79.0
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 5.7e-57 224.6 144 79.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 5.7e-57 224.6 143 80.4
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 7.5e-57 224.2 142 79.6
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.3e-56 223.4 152 75.0
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 1.7e-56 223.0 147 76.9
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.2e-56 222.6 144 81.2
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 2.2e-56 222.6 144 81.2
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 2.2e-56 222.6 144 77.8
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.8e-56 222.2 144 79.9
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 3.7e-56 221.9 143 79.0
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.7e-56 221.9 143 78.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.7e-56 221.9 143 78.3
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 6.3e-56 221.1 146 78.1
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 8.3e-56 220.7 144 77.8
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 8.3e-56 220.7 144 77.8
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.4e-55 219.9 145 77.2
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.4e-55 219.9 146 77.4
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.4e-55 219.9 145 75.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 1.4e-55 219.9 143 77.6
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 2.4e-55 219.2 146 76.7
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 2.4e-55 219.2 148 77.0
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 2.4e-55 219.2 148 77.0
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 2.4e-55 219.2 148 77.0
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 3.1e-55 218.8 145 78.6
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 4.1e-55 218.4 144 77.1
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 4.1e-55 218.4 144 75.7
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.2e-54 216.9 143 77.6
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.6e-54 216.5 145 77.9
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.7e-54 215.7 143 76.2
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.5e-54 215.3 145 74.5
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 3.5e-54 215.3 144 75.0
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 3.5e-54 215.3 144 76.4
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 5.9e-54 214.5 143 75.5
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 5.9e-54 214.5 143 76.9
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 5.9e-54 214.5 143 76.9
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 7.7e-54 214.2 131 84.0
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.0e-53 213.8 146 74.7
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.3e-53 213.4 143 75.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 1.7e-53 213.0 148 74.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.3e-53 212.6 144 75.0
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.3e-53 212.6 146 74.7
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.9e-53 212.2 130 82.3
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 3.8e-53 211.8 147 74.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 3.8e-53 211.8 140 78.6
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.0e-53 211.5 132 81.8
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 5.0e-53 211.5 148 72.3
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 6.5e-53 211.1 144 77.1
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 6.5e-53 211.1 143 75.5
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 8.6e-53 210.7 148 74.3
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.1e-52 210.3 143 74.8
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.1e-52 210.3 144 74.3
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.1e-52 210.3 147 74.1
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.5e-52 209.9 146 74.7
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.5e-52 209.9 143 75.5
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.9e-52 209.5 143 74.8
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.9e-52 209.5 139 77.0
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.5e-52 209.1 145 76.6
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.3e-52 208.8 144 75.0
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 4.2e-52 208.4 144 77.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.2e-52 208.4 143 74.8
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 5.5e-52 208.0 143 75.5
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 7.2e-52 207.6 143 73.4
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 9.5e-52 207.2 143 74.1
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 9.5e-52 207.2 111 90.1
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 9.5e-52 207.2 143 77.6
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 1.2e-51 206.8 154 71.4
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.2e-51 206.8 146 76.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.6e-51 206.5 143 73.4
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.1e-51 206.1 145 71.7
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.1e-51 206.1 141 75.2
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 2.8e-51 205.7 146 71.2
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 2.8e-51 205.7 170 65.9
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 2.8e-51 205.7 146 71.9
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 3.6e-51 205.3 143 74.1
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 4.7e-51 204.9 148 73.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 4.7e-51 204.9 143 74.8
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.7e-51 204.9 145 71.7
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 4.7e-51 204.9 144 70.1
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.4e-50 203.4 165 66.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-50 203.0 143 73.4
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 3.0e-50 202.2 146 73.3
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 5.2e-50 201.4 147 72.1
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.5e-49 199.9 146 70.5
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.6e-49 199.1 110 87.3
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 7.5e-49 197.6 142 75.4
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.2e-48 196.1 115 83.5
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 2.2e-48 196.1 143 72.0
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 3.7e-48 195.3 147 70.7
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 3.7e-48 195.3 147 70.7
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 8.3e-48 194.1 222 52.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.4e-47 193.4 147 70.1
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 7.0e-47 191.0 104 88.5
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 7.8e-46 187.6 143 69.9
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.7e-45 186.4 174 59.8
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 5.0e-45 184.9 111 81.1
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.6e-43 179.9 204 52.0
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 1.2e-41 173.7 109 79.8
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.5e-41 173.3 107 84.1
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 5.8e-41 171.4 92 91.3
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.9e-40 168.3 91 90.1
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 1.8e-39 166.4 90 88.9
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 7.0e-39 164.5 88 89.8
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-35 153.7 111 73.9
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 6.2e-35 151.4 99 77.8
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 6.4e-32 141.4 108 62.0
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 4.6e-30 135.2 110 67.3
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 2.3e-29 132.9 108 61.1
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.9e-29 132.1 145 54.5
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 8.9e-26 120.9 108 58.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 2.2e-24 116.3 63 90.5
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.1e-22 109.8 60 88.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 4.6e-22 108.6 73 68.5
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 7.3e-20 101.3 86 55.8
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 1.2e-19 100.5 101 56.4
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 6.4e-16 88.2 113 46.9
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 1.9e-15 86.7 141 42.6
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.3e-13 80.5 122 41.0
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.1e-12 77.4 63 60.3
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 1.4e-10 70.5 66 56.1
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 2.4e-10 69.7 48 72.9
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.4e-10 69.7 59 62.7
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 2.2e-08 63.2 35 82.9
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 3.2e-07 59.3 111 38.7
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 4.2e-07 58.9 54 53.7
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 5.4e-07 58.5 43 69.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 5.4e-07 58.5 43 69.8
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 7.1e-07 58.2 72 43.1
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 9.3e-07 57.8 59 62.7
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 7.8e-06 54.7 29 82.8


User provided reference genes

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