Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI19_g09927_MAGBIO Magnolia biondii HOM05D003960 ORTHO05D004297 4.1e-72 274.6 138 100.0
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 2.9e-22 109.0 97 63.9
Peaxi162Scf00486g00012 Petunia axillaris HOM05D003960 ORTHO05D004297 5.0e-22 108.2 96 61.5
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 4.3e-21 105.1 89 65.2
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 9.5e-21 104.0 89 64.0
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 9.5e-21 104.0 95 57.9
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 9.5e-21 104.0 95 57.9
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.2e-20 103.6 89 62.9
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.8e-20 102.4 89 61.8
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 2.8e-20 102.4 97 60.8
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 3.6e-20 102.1 89 62.9
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 4.7e-20 101.7 102 58.8
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 6.1e-20 101.3 90 60.0
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 1.0e-19 100.5 90 61.1
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 1.0e-19 100.5 95 55.8
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 1.8e-19 99.8 91 58.2
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 2.3e-19 99.4 96 60.4
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 2.3e-19 99.4 95 57.9
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 3.1e-19 99.0 92 56.5
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 6.8e-19 97.8 92 59.8
PSO421G0342 Papaver somniferum HOM05D003960 ORTHO05D004297 6.8e-19 97.8 89 58.4
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 1.2e-18 97.1 94 58.5
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.2e-18 97.1 89 60.7
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 1.2e-18 97.1 96 60.4
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 1.5e-18 96.7 89 59.6
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 2.6e-18 95.9 89 60.7
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 3.4e-18 95.5 96 60.4
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 4.4e-18 95.1 92 58.7
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 7.5e-18 94.4 100 55.0
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 7.5e-18 94.4 100 55.0
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 1.3e-17 93.6 89 60.7
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 1.7e-17 93.2 93 54.8
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 2.9e-17 92.4 94 56.4
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 3.7e-17 92.0 96 54.2
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 3.7e-17 92.0 99 54.5
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 4.9e-17 91.7 100 54.0
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 4.9e-17 91.7 100 54.0
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 4.9e-17 91.7 94 55.3
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 4.9e-17 91.7 93 57.0
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 4.9e-17 91.7 90 54.4
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 4.9e-17 91.7 105 50.5
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 4.9e-17 91.7 90 55.6
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 6.4e-17 91.3 91 57.1
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 6.4e-17 91.3 98 55.1
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 6.4e-17 91.3 97 56.7
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 6.4e-17 91.3 92 53.3
MSTRG.14089 Avicennia marina HOM05D003960 ORTHO05D004297 8.3e-17 90.9 91 57.1
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 8.3e-17 90.9 94 54.3
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 1.1e-16 90.5 89 56.2
Gorai.013G223700 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.1e-16 90.5 89 57.3
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.1e-16 90.5 96 54.2
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 1.1e-16 90.5 97 57.7
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 1.4e-16 90.1 97 55.7
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 1.9e-16 89.7 89 55.1
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 1.9e-16 89.7 96 54.2
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 1.9e-16 89.7 89 51.7
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 1.9e-16 89.7 94 56.4
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 2.4e-16 89.4 97 57.7
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 2.4e-16 89.4 99 52.5
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 3.2e-16 89.0 96 53.1
TWI63G0819 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 3.2e-16 89.0 95 50.5
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 4.1e-16 88.6 90 54.4
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 4.1e-16 88.6 89 56.2
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 4.1e-16 88.6 102 55.9
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 5.4e-16 88.2 89 53.9
Medtr3g105330 Medicago truncatula HOM05D003960 ORTHO05D004297 5.4e-16 88.2 95 54.7
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 5.4e-16 88.2 95 56.8
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 5.4e-16 88.2 92 55.4
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.4e-16 88.2 94 51.1
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.4e-16 88.2 94 53.2
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 7.0e-16 87.8 89 53.9
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 7.0e-16 87.8 90 53.3
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 7.0e-16 87.8 90 53.3
Psat5g033920 Pisum sativum HOM05D003960 ORTHO05D004297 7.0e-16 87.8 95 54.7
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 9.2e-16 87.4 90 54.4
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 9.2e-16 87.4 107 47.7
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 9.2e-16 87.4 100 50.0
C03p11710 Brassica napus HOM05D003960 ORTHO05D004297 1.2e-15 87.0 91 53.8
BolC3t13642H Brassica oleracea HOM05D003960 ORTHO05D004297 1.2e-15 87.0 91 53.8
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 1.6e-15 86.7 94 52.1
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 2.0e-15 86.3 90 53.3
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 2.0e-15 86.3 90 53.3
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 2.7e-15 85.9 98 55.1
CARHR192160 Cardamine hirsuta HOM05D003960 ORTHO05D004297 3.5e-15 85.5 89 51.7
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 3.5e-15 85.5 95 51.6
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 4.6e-15 85.1 97 57.7
Cfa002978 Carpinus fangiana HOM05D003960 ORTHO05D004297 6.0e-15 84.7 94 53.2
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 6.0e-15 84.7 95 50.5
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 6.0e-15 84.7 97 54.6
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 6.0e-15 84.7 97 51.5
AL6G32200 Arabidopsis lyrata HOM05D003960 ORTHO05D004297 7.8e-15 84.3 89 53.9
BcaC03g13784 Brassica carinata HOM05D003960 ORTHO05D004297 7.8e-15 84.3 90 52.2
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 7.8e-15 84.3 105 47.6
Zm00001eb068890 Zea mays HOM05D000032 ORTHO05D004297 7.8e-15 84.3 104 51.0
VMungo1309G2154 Vigna mungo HOM05D003960 ORTHO05D004297 1.0e-14 84.0 95 54.7
TPR.G3570 Trifolium pratense HOM05D003960 ORTHO05D004297 1.3e-14 83.6 89 52.8
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.7e-14 83.2 89 49.4
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.7e-14 83.2 89 49.4
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 1.7e-14 83.2 89 48.3
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 1.7e-14 83.2 95 49.5
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 1.7e-14 83.2 91 54.9
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 1.7e-14 83.2 95 51.6
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 2.3e-14 82.8 97 45.4
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 2.3e-14 82.8 95 52.6
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 3.9e-14 82.0 93 50.5
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 3.9e-14 82.0 90 52.2
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 5.0e-14 81.6 95 50.5
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 5.0e-14 81.6 90 54.4
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 5.0e-14 81.6 96 45.8
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 5.0e-14 81.6 96 45.8
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 5.0e-14 81.6 94 52.1
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 6.6e-14 81.3 95 51.6
Lalb_Chr23g0268031 Lupinus albus HOM05D003960 ORTHO05D004297 6.6e-14 81.3 92 48.9
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 8.6e-14 80.9 97 48.5
QL11p001038 Quercus lobata HOM05D003960 ORTHO05D004297 8.6e-14 80.9 93 50.5
AUR62025257 Chenopodium quinoa HOM05D003960 ORTHO05D004297 1.5e-13 80.1 92 51.1
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.5e-13 80.1 90 45.6
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 1.5e-13 80.1 98 45.9
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.9e-13 79.7 91 48.4
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 2.5e-13 79.3 89 49.4
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 2.5e-13 79.3 92 47.8
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 4.3e-13 78.6 92 50.0
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 4.3e-13 78.6 95 48.4
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 7.3e-13 77.8 55 61.8
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 9.5e-13 77.4 90 48.9
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 2.1e-12 76.3 87 44.8
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 2.1e-12 76.3 94 50.0
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 2.1e-12 76.3 90 47.8
Gohir.D13G195000 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.6e-12 75.5 63 58.7
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 4.7e-12 75.1 90 43.3
HanXRQChr13g0407981 Helianthus annuus HOM05D003960 ORTHO05D004297 4.7e-12 75.1 48 75.0
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 6.2e-12 74.7 85 51.8
unitig_32.g11516 Utricularia gibba HOM05D003960 ORTHO05D004297 6.2e-12 74.7 86 53.5
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 8.1e-12 74.3 93 46.2
Eucgr.K01930 Eucalyptus grandis HOM05D003960 ORTHO05D004297 8.1e-12 74.3 60 60.0
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 8.1e-12 74.3 50 68.0
CiPaw.03G205100 Carya illinoinensis HOM05D003960 ORTHO05D004297 1.1e-11 73.9 90 51.1
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 1.1e-11 73.9 50 68.0
Nitab4.5_0003159g0080 Nicotiana tabacum HOM05D003960 ORTHO05D004297 1.1e-11 73.9 77 59.7
ATR0598G332 Amborella trichopoda HOM05D003960 ORTHO05D004297 1.4e-11 73.6 96 49.0
vmacro17132 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 1.4e-11 73.6 88 50.0
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.8e-11 73.2 63 57.1
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 2.3e-11 72.8 70 54.3
Duzib187G0159 Durio zibethinus HOM05D003960 ORTHO05D004297 2.3e-11 72.8 70 51.4
Eucgr.L03350 Eucalyptus grandis HOM05D003960 ORTHO05D004297 3.1e-11 72.4 50 70.0
CiPaw.05G156700 Carya illinoinensis HOM05D003960 ORTHO05D004297 5.2e-11 71.6 93 45.2
CiPaw.05G157200 Carya illinoinensis HOM05D003960 ORTHO05D004297 5.2e-11 71.6 93 45.2
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 6.8e-11 71.2 101 45.5
Thecc.09G065300 Theobroma cacao HOM05D003960 ORTHO05D004297 1.2e-10 70.5 50 64.0
CANSAT56G3391 Cannabis sativa HOM05D003960 ORTHO05D004297 1.5e-10 70.1 50 60.0
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 3.4e-10 68.9 85 44.7
SMO174G0135 Selaginella moellendorffii HOM05D003960 ORTHO05D004297 9.8e-10 67.4 90 44.4
Eucgr.B00068 Eucalyptus grandis HOM05D003960 ORTHO05D004297 1.3e-09 67.0 88 45.5
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.3e-09 67.0 84 44.0
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.9e-09 65.9 84 42.9
Os08g0455900 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 2.9e-09 65.9 54 61.1
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 6.4e-09 64.7 88 46.6
BraA03t10329Z Brassica rapa HOM05D003960 ORTHO05D004297 8.3e-09 64.3 91 45.1
Eucgr.J01772 Eucalyptus grandis HOM05D003960 ORTHO05D004297 8.3e-09 64.3 95 43.2
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 2.4e-08 62.8 76 47.4
Mapoly0011s0109 Marchantia polymorpha HOM05D003960 ORTHO05D004297 7.1e-08 61.2 41 68.3
Zm00001eb327100 Zea mays HOM05D003960 ORTHO05D004297 9.2e-08 60.8 36 77.8
Rhsim08G0237600 Rhododendron simsii HOM05D000933 ORTHO05D000820 2.7e-07 59.3 39 66.7
Thhalv10010785m.g Eutrema salsugineum HOM05D001242 ORTHO05D001089 1.0e-06 57.4 83 42.2
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis HOM05D003960 ORTHO05D004297 2.3e-06 56.2 45 60.0
Pp3c27_4780 Physcomitrium patens HOM05D003960 ORTHO05D004297 2.3e-06 56.2 48 56.2
Pp3c7_1360 Physcomitrium patens HOM05D003960 ORTHO05D004297 5.1e-06 55.1 41 65.9
AL5G25930 Arabidopsis lyrata HOM05D001242 ORTHO05D001089 6.6e-06 54.7 83 39.8


User provided reference genes

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