Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.6e-35 151.4 70 100.0
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.6e-27 124.8 70 87.1
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 4.2e-25 117.5 68 79.4
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 7.2e-25 116.7 71 77.5
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 2.7e-24 114.8 70 77.1
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 1.1e-22 109.4 73 74.0
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.0e-22 108.6 71 71.8
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 4.4e-22 107.5 75 72.0
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 9.7e-22 106.3 70 71.4
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 3.7e-21 104.4 76 72.4
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 6.3e-21 103.6 73 72.6
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 1.1e-20 102.8 73 65.8
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.4e-20 102.4 74 67.6
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-20 102.4 68 70.6
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 1.4e-20 102.4 68 70.6
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 1.4e-20 102.4 68 70.6
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 1.4e-20 102.4 74 63.5
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.8e-20 102.1 72 66.7
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 4.1e-20 100.9 72 66.7
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 4.1e-20 100.9 69 68.1
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.5e-19 99.0 72 69.4
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 2.0e-19 98.6 71 69.0
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 2.6e-19 98.2 79 62.0
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.4e-19 97.8 72 65.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 4.5e-19 97.4 66 74.2
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 5.9e-19 97.1 74 63.5
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 7.7e-19 96.7 73 64.4
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 7.7e-19 96.7 75 64.0
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.3e-18 95.9 73 65.8
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 1.3e-18 95.9 73 63.0
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.7e-18 95.5 72 63.9
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 2.2e-18 95.1 67 67.2
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.2e-18 95.1 73 64.4
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 2.2e-18 95.1 72 62.5
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 2.9e-18 94.7 64 71.9
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 5.0e-18 94.0 72 66.7
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 5.0e-18 94.0 73 61.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 5.0e-18 94.0 75 61.3
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 5.0e-18 94.0 72 62.5
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 6.5e-18 93.6 64 75.0
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 1.1e-17 92.8 85 58.8
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.1e-17 92.8 70 67.1
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.9e-17 92.0 78 61.5
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 2.5e-17 91.7 74 59.5
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 3.2e-17 91.3 69 69.6
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 7.2e-17 90.1 73 60.3
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 9.4e-17 89.7 71 60.6
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 1.6e-16 89.0 63 68.3
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.6e-16 89.0 73 58.9
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.6e-16 89.0 77 61.0
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 2.1e-16 88.6 71 59.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 2.7e-16 88.2 71 60.6
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 6.1e-16 87.0 75 57.3
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 1.0e-15 86.3 81 51.9
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.0e-15 86.3 79 58.2
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 1.0e-15 86.3 71 57.7
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.8e-15 85.5 76 56.6
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-15 85.5 74 56.8
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 2.3e-15 85.1 65 69.2
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.3e-15 85.1 68 66.2
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 2.3e-15 85.1 73 61.6
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 3.9e-15 84.3 72 59.7
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 5.2e-15 84.0 70 61.4
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 6.7e-15 83.6 76 55.3
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 8.8e-15 83.2 69 63.8
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 8.8e-15 83.2 69 59.4
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 1.1e-14 82.8 72 58.3
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.1e-14 82.8 65 67.7
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 1.1e-14 82.8 65 60.0
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-14 81.6 68 58.8
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 2.6e-14 81.6 85 51.8
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 3.3e-14 81.3 70 61.4
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 3.3e-14 81.3 70 61.4
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 4.4e-14 80.9 70 61.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 4.4e-14 80.9 64 60.9
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.4e-14 80.9 70 61.4
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 7.4e-14 80.1 79 55.7
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.7e-13 79.0 83 54.2
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 1.7e-13 79.0 65 60.0
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 2.2e-13 78.6 90 48.9
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 2.2e-13 78.6 72 54.2
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 2.8e-13 78.2 83 51.8
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 3.7e-13 77.8 75 53.3
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.8e-13 77.4 75 53.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.8e-13 77.4 75 53.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.8e-13 77.4 75 53.3
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 4.8e-13 77.4 64 65.6
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 6.3e-13 77.0 72 55.6
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-12 76.3 94 52.1
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 1.4e-12 75.9 75 53.3
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 2.4e-12 75.1 92 46.7
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 2.4e-12 75.1 75 52.0
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 4.1e-12 74.3 89 51.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 4.1e-12 74.3 64 62.5
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 5.3e-12 73.9 56 66.1
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 1.6e-11 72.4 66 54.5
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 2.0e-11 72.0 82 50.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 3.5e-11 71.2 61 63.9
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 4.5e-11 70.9 65 53.8
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.9e-11 70.5 67 52.2
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.9e-11 70.5 68 63.2
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 7.7e-11 70.1 78 50.0
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.0e-10 69.7 69 50.7
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-10 69.3 69 50.7
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 1.3e-10 69.3 69 50.7
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.3e-10 69.3 69 50.7
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 2.2e-10 68.6 72 47.2
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.2e-10 68.6 72 47.2
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 2.2e-10 68.6 76 48.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 2.2e-10 68.6 76 48.7
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 2.2e-10 68.6 72 48.6
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.2e-10 68.6 67 50.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 2.2e-10 68.6 73 52.1
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 2.9e-10 68.2 73 46.6
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 3.8e-10 67.8 70 50.0
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 3.8e-10 67.8 69 49.3
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 5.0e-10 67.4 72 47.2
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 5.0e-10 67.4 70 50.0
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 5.0e-10 67.4 69 47.8
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 5.0e-10 67.4 76 47.4
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 5.0e-10 67.4 69 47.8
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 5.0e-10 67.4 69 49.3
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 5.0e-10 67.4 69 47.8
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 5.0e-10 67.4 76 47.4
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 5.0e-10 67.4 80 50.0
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 5.0e-10 67.4 73 46.6
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 5.0e-10 67.4 73 46.6
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.5e-10 67.0 68 60.3
HPP92_010590 Vanilla planifolia HOM05D004817 ORTHO05D005790 6.5e-10 67.0 47 63.8
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.5e-09 65.9 76 44.7
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.5e-09 65.9 74 45.9
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 1.9e-09 65.5 69 47.8
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.2e-09 64.7 73 45.2
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 3.2e-09 64.7 74 47.3
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.2e-09 64.7 73 45.2
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 4.2e-09 64.3 73 45.2
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-09 64.3 75 46.7
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-09 64.3 73 45.2
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 4.2e-09 64.3 73 45.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-09 64.3 75 46.7
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 4.2e-09 64.3 73 45.2
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 5.2e-07 57.4 99 39.4


User provided reference genes

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