Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 8.4e-304 1046.2 522 100.0
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 4.3e-215 751.5 569 70.3
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 1.2e-206 723.4 540 69.8
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.6e-206 721.8 536 70.1
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 6.2e-206 721.1 541 69.5
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 8.1e-206 720.7 540 71.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 8.1e-206 720.7 528 71.2
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.8e-205 719.5 528 70.5
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 1.8e-205 719.5 534 69.5
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 5.2e-205 718.0 536 70.1
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 1.5e-204 716.5 521 71.0
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.5e-204 716.5 527 70.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.5e-204 716.5 528 69.9
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.0e-204 716.1 570 66.0
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.0e-204 716.1 514 71.6
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.6e-204 715.7 559 67.1
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 7.6e-204 714.1 524 70.8
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 1.7e-203 713.0 520 70.6
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.2e-203 712.6 535 68.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.2e-203 712.6 585 65.6
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.9e-203 712.2 552 68.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 6.4e-203 711.1 560 67.1
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.4e-203 710.7 553 67.5
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.4e-202 709.9 553 67.3
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 1.4e-202 709.9 527 69.4
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 1.4e-202 709.9 561 67.7
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 1.4e-202 709.9 524 70.6
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.2e-202 708.8 528 69.5
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 3.2e-202 708.8 552 67.8
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 4.2e-202 708.4 526 70.2
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 9.3e-202 707.2 526 70.2
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 9.3e-202 707.2 565 66.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.6e-201 706.4 560 66.6
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.6e-201 706.4 556 67.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 2.1e-201 706.1 543 68.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 2.1e-201 706.1 574 66.4
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.5e-201 705.3 546 67.2
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.5e-201 705.3 524 69.5
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.0e-201 704.5 528 69.9
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.0e-200 703.7 576 65.8
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 1.3e-200 703.4 525 70.1
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.3e-200 702.6 556 66.4
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.0e-200 702.2 563 66.8
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 3.0e-200 702.2 543 67.2
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 5.1e-200 701.4 580 64.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.5e-199 699.9 534 68.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.5e-199 699.1 555 67.9
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 2.5e-199 699.1 562 65.5
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.3e-199 698.7 541 66.5
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 4.3e-199 698.4 528 68.8
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 5.6e-199 698.0 525 68.8
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 9.6e-199 697.2 543 67.4
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 2.8e-198 695.7 534 67.4
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 2.8e-198 695.7 550 66.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 4.8e-198 694.9 568 65.7
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 8.1e-198 694.1 543 66.3
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 8.1e-198 694.1 543 66.3
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 8.1e-198 694.1 543 66.3
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.1e-197 693.7 543 67.2
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 2.4e-197 692.6 516 68.8
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 3.1e-197 692.2 543 66.1
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 3.1e-197 692.2 543 66.1
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 4.0e-197 691.8 524 68.1
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 5.3e-197 691.4 516 68.6
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 6.9e-197 691.0 516 69.4
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 9.0e-197 690.6 528 68.4
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.5e-196 689.9 521 67.8
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-196 689.9 524 67.9
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.0e-196 689.5 534 66.7
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.0e-196 689.5 497 70.4
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 2.6e-196 689.1 540 65.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.6e-196 689.1 544 67.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 4.5e-196 688.3 521 67.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 4.5e-196 688.3 516 68.4
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 4.5e-196 688.3 559 65.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 5.8e-196 688.0 541 66.7
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 7.6e-196 687.6 517 68.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 7.6e-196 687.6 513 68.8
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 9.9e-196 687.2 558 65.4
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.3e-195 686.8 538 66.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 3.8e-195 685.3 507 69.0
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 6.4e-195 684.5 528 67.8
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 8.4e-195 684.1 521 67.9
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-194 683.7 551 65.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-194 683.3 529 66.9
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.2e-194 681.8 558 66.7
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 7.1e-194 681.0 528 67.2
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 2.1e-193 679.5 545 64.8
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.5e-193 678.7 466 75.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 6.7e-192 674.5 553 63.8
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.5e-191 673.3 522 67.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 4.3e-191 671.8 528 66.9
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.6e-191 671.4 512 67.2
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-190 669.8 538 65.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-190 668.7 562 63.3
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.5e-188 663.3 531 65.0
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 7.6e-188 661.0 523 66.3
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 4.6e-185 651.7 544 64.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.8e-184 649.8 544 62.7
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 8.7e-184 647.5 496 66.7
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-182 643.7 542 67.9
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.7e-182 642.1 470 70.2
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.1e-181 639.0 483 68.1
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.3e-181 638.3 550 62.4
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 2.0e-180 636.3 500 65.4
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 2.5e-178 629.4 522 63.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.6e-177 625.2 493 64.5
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 1.3e-174 617.1 514 63.8
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 4.8e-174 615.1 493 63.7
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.1e-170 604.0 486 66.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 1.8e-168 596.7 556 60.6
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.8e-163 578.9 536 57.8
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.5e-162 575.1 527 60.7
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 9.4e-162 574.3 509 61.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.9e-160 568.9 542 58.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.3e-159 565.8 420 67.9
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-157 559.3 405 72.3
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 3.8e-155 552.4 447 63.3
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 8.0e-153 544.7 493 57.4
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.1e-151 540.8 451 60.8
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 6.5e-147 525.0 470 56.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 2.5e-146 523.1 493 57.2
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.1e-130 471.1 511 51.9
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-124 451.1 338 70.4
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-124 451.1 402 57.5
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.7e-121 439.1 531 47.6
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.9e-118 429.9 490 48.8
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 9.2e-117 424.9 491 48.7
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.8e-116 421.8 491 48.1
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.3e-114 416.4 476 51.1
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.2e-113 414.5 323 69.3
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 7.3e-106 388.7 331 60.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.9e-98 364.0 476 44.3
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.4e-94 349.0 496 40.5
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-83 314.3 363 53.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.4e-80 304.7 561 38.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 7.1e-77 292.4 531 35.0
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-69 266.9 184 69.0
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.5e-69 266.2 328 48.2
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-67 261.5 424 40.3
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 3.9e-67 260.0 445 35.5
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.8e-57 226.5 295 46.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 8.5e-54 215.7 488 34.4
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-52 211.5 148 73.6
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.2e-39 168.7 102 75.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 3.5e-39 167.2 133 65.4
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.2e-36 158.7 438 30.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 3.2e-29 134.0 108 66.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 3.6e-28 130.6 141 49.6
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 3.0e-27 127.5 79 70.9
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 4.4e-26 123.6 70 91.4
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 3.1e-24 117.5 105 62.9
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 6.1e-20 103.2 87 67.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 8.8e-19 99.4 77 68.8
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-18 98.6 71 66.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.3e-14 85.5 74 60.8
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 6.6e-14 83.2 53 73.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 4.2e-13 80.5 66 62.1
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.0e-11 74.3 78 39.7
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.8e-11 73.2 69 55.1
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 9.8e-10 69.3 90 48.9
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 3.2e-08 64.3 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.2e-07 62.4 44 65.9
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-07 62.4 52 65.4
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 3.5e-07 60.8 52 55.8
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.9e-06 57.4 65 50.8
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 8.6e-06 56.2 39 64.1


User provided reference genes

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