Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g11292_MAGBIO Magnolia biondii HOM05D000169 ORTHO05D007693 3.5e-46 188.0 97 100.0
Dinv10791 Davidia involucrata HOM05D000169 ORTHO05D007693 1.3e-13 79.7 64 62.5
TAR627G0736 Trochodendron aralioides HOM05D000169 ORTHO05D007693 2.5e-12 75.5 64 60.9
ATR0165G033 Amborella trichopoda HOM05D000169 ORTHO05D007693 3.3e-12 75.1 66 59.1
Actinidia33686 Actinidia chinensis HOM05D000169 ORTHO05D007693 4.3e-12 74.7 64 59.4
Atru.chr10.844 Acer truncatum HOM05D000169 ORTHO05D007693 5.7e-12 74.3 64 59.4
vmacro03383 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 7.4e-12 73.9 64 59.4
vmacro03453 Vaccinium macrocarpon HOM05D000169 ORTHO05D007693 7.4e-12 73.9 64 59.4
CSS0003732 Camellia sinensis var. sinensis HOM05D000169 ORTHO05D007693 1.3e-11 73.2 63 58.7
MD10G1252900 Malus domestica HOM05D000169 ORTHO05D007693 2.2e-11 72.4 64 59.4
DCAR_004839 Daucus carota HOM05D000169 ORTHO05D007693 2.8e-11 72.0 64 57.8
DCAR_004840 Daucus carota HOM05D000169 ORTHO05D007693 2.8e-11 72.0 64 57.8
QL05p062500 Quercus lobata HOM05D000169 ORTHO05D007693 3.7e-11 71.6 65 58.5
PGSC0003DMG400021130 Solanum tuberosum HOM05D001327 ORTHO05D002270 3.7e-11 71.6 70 54.3
Ciclev10017814m.g Citrus clementina HOM05D000169 ORTHO05D007693 4.8e-11 71.2 64 56.2
Lj2C330T2 Lonicera japonica HOM05D000169 ORTHO05D007693 4.8e-11 71.2 64 56.2
Prupe.4G090600 Prunus persica HOM05D000169 ORTHO05D007693 4.8e-11 71.2 64 54.7
Sed0014236 Sechium edule HOM05D000169 ORTHO05D007693 4.8e-11 71.2 64 60.9
Sc10g0006290 Simmondsia chinensis HOM05D000169 ORTHO05D007693 4.8e-11 71.2 63 61.9
Nn4g26677 Nelumbo nucifera HOM05D000356 ORTHO05D007693 8.2e-11 70.5 63 63.5
FAN16G2954 Fragaria x ananassa HOM05D000169 ORTHO05D007693 1.1e-10 70.1 67 55.2
Solyc02g069920.4 Solanum lycopersicum HOM05D000169 ORTHO05D007693 1.1e-10 70.1 64 56.2
Sopen02g019060 Solanum pennellii HOM05D000169 ORTHO05D007693 1.1e-10 70.1 64 56.2
GSVIVG01021658001 Vitis vinifera HOM05D000169 ORTHO05D007693 1.1e-10 70.1 64 56.2
FvH4_3g10160 Fragaria vesca HOM05D000169 ORTHO05D007693 1.4e-10 69.7 64 56.2
FAN11G3594 Fragaria x ananassa HOM05D000169 ORTHO05D007693 1.4e-10 69.7 64 56.2
Rhsim13G0121500 Rhododendron simsii HOM05D000169 ORTHO05D007693 1.4e-10 69.7 63 58.7
Migut.H01327 Erythranthe guttata HOM05D000169 ORTHO05D007693 1.8e-10 69.3 64 56.2
Sc10g0005430 Simmondsia chinensis HOM05D000169 ORTHO05D007693 1.8e-10 69.3 63 60.3
PGSC0003DMG400021188 Solanum tuberosum HOM05D000169 ORTHO05D007693 1.8e-10 69.3 64 57.8
FAN21G3676 Fragaria x ananassa HOM05D000169 ORTHO05D007693 2.4e-10 68.9 64 56.2
SalBow7G0208 Salvia bowleyana HOM05D000169 ORTHO05D007693 2.4e-10 68.9 63 55.6
FAN25G2274 Fragaria x ananassa HOM05D000169 ORTHO05D007693 3.1e-10 68.6 64 56.2
CiPaw.10G109200 Carya illinoinensis HOM05D000169 ORTHO05D007693 4.1e-10 68.2 64 54.7
Lalb_Chr20g0120061 Lupinus albus HOM05D000169 ORTHO05D007693 5.3e-10 67.8 64 56.2
Psat1g167440 Pisum sativum HOM05D000169 ORTHO05D007693 6.9e-10 67.4 61 55.7
CDE03G0252 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 9.0e-10 67.0 66 54.5
Nitab4.5_0001225g0090 Nicotiana tabacum HOM05D000169 ORTHO05D007693 9.0e-10 67.0 64 54.7
ClCG01G025160 Citrullus lanatus HOM05D000169 ORTHO05D007693 1.2e-09 66.6 64 54.7
MELO3C007073.2 Cucumis melo HOM05D000169 ORTHO05D007693 1.2e-09 66.6 64 54.7
ECA236G2888 Erigeron canadensis HOM05D000169 ORTHO05D007693 1.2e-09 66.6 61 60.7
Thhalv10007264m.g Eutrema salsugineum HOM05D000169 ORTHO05D007693 1.2e-09 66.6 64 51.6
Potri.011G164100 Populus trichocarpa HOM05D000169 ORTHO05D007693 1.2e-09 66.6 64 51.6
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 1.2e-09 66.6 64 53.1
MSTRG.16292 Avicennia marina HOM05D000169 ORTHO05D007693 1.5e-09 66.2 65 53.8
CAN.G79.33 Capsicum annuum HOM05D000169 ORTHO05D007693 1.5e-09 66.2 65 53.8
CDE06G2571 Ceratophyllum demersum HOM05D000169 ORTHO05D007693 1.5e-09 66.2 66 54.5
THA.LOC104814347 Tarenaya hassleriana HOM05D000356 ORTHO05D007693 1.5e-09 66.2 64 51.6
Solyc02g069750.3 Solanum lycopersicum HOM05D001327 ORTHO05D002270 2.6e-09 65.5 64 56.2
TPR.G26348 Trifolium pratense HOM05D000169 ORTHO05D007693 2.6e-09 65.5 64 54.7
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 3.4e-09 65.1 64 51.6
Sopen02g018910 Solanum pennellii HOM05D000169 ORTHO05D007693 3.4e-09 65.1 65 55.4
Eucgr.D00174 Eucalyptus grandis HOM05D000169 ORTHO05D007693 4.5e-09 64.7 66 51.5
Medtr2g030240 Medicago truncatula HOM05D000356 ORTHO05D007693 4.5e-09 64.7 61 55.7
TWI15G0677 Tripterygium wilfordii HOM05D000169 ORTHO05D007693 4.5e-09 64.7 63 57.1
Haze_05866 Corylus avellana HOM05D000169 ORTHO05D007693 5.9e-09 64.3 64 51.6
Nitab4.5_0001583g0010 Nicotiana tabacum HOM05D000169 ORTHO05D007693 5.9e-09 64.3 64 53.1
Lj6g0025648 Lotus japonicus HOM05D000169 ORTHO05D007693 7.6e-09 63.9 65 50.8
CiPaw.09G141800 Carya illinoinensis HOM05D000169 ORTHO05D007693 1.0e-08 63.5 64 50.0
HanXRQChr04g0116481 Helianthus annuus HOM05D000169 ORTHO05D007693 1.0e-08 63.5 64 53.1
PSO675G5523 Papaver somniferum HOM05D000169 ORTHO05D007693 1.0e-08 63.5 60 56.7
Lsat_1_v5_gn_7_27381 Lactuca sativa HOM05D000169 ORTHO05D007693 1.3e-08 63.2 64 50.0
Carub.0001s2876 Capsella rubella HOM05D000169 ORTHO05D007693 1.7e-08 62.8 65 46.2
Cfa000807 Carpinus fangiana HOM05D000169 ORTHO05D007693 1.7e-08 62.8 64 50.0
COL.COLO4_26836 Corchorus olitorius HOM05D000169 ORTHO05D007693 1.7e-08 62.8 68 50.0
Oeu008957.2 Olea europaea HOM05D000169 ORTHO05D007693 1.7e-08 62.8 63 52.4
Ca_00844_v3 Cicer arietinum L. HOM05D000169 ORTHO05D007693 2.2e-08 62.4 61 54.1
Hund19369 Selenicereus undatus HOM05D000169 ORTHO05D007693 2.2e-08 62.4 64 53.1
arahy.Tifrunner.gnm1.ann1.T5Y52R Arachis hypogaea HOM05D000169 ORTHO05D007693 3.8e-08 61.6 63 52.4
AT1G30520 Arabidopsis thaliana HOM05D000169 ORTHO05D007693 5.0e-08 61.2 63 47.6
C05p29540 Brassica napus HOM05D000169 ORTHO05D007693 5.0e-08 61.2 64 46.9
BolC5t31685H Brassica oleracea HOM05D000169 ORTHO05D007693 5.0e-08 61.2 64 46.9
RcHm_v2.0_Chr5g0016071 Rosa chinensis HOM05D000169 ORTHO05D007693 5.0e-08 61.2 64 50.0
Aa31LG6G11770 Aethionema arabicum HOM05D000169 ORTHO05D007693 6.5e-08 60.8 64 46.9
Ah.04g153410 Amaranthus hybridus HOM05D000169 ORTHO05D007693 6.5e-08 60.8 62 53.2
BcaB07g32664 Brassica carinata HOM05D000356 ORTHO05D007693 8.5e-08 60.5 64 45.3
BcaB07g32688 Brassica carinata HOM05D000169 ORTHO05D007693 8.5e-08 60.5 64 45.3
AL1G44564 Arabidopsis lyrata HOM05D000169 ORTHO05D007693 1.1e-07 60.1 65 46.2
arahy.Tifrunner.gnm1.ann1.D0AYNK Arachis hypogaea HOM05D000169 ORTHO05D007693 1.1e-07 60.1 63 52.4
A09p35920 Brassica napus HOM05D000169 ORTHO05D007693 1.1e-07 60.1 64 45.3
BraA09t39117Z Brassica rapa HOM05D000169 ORTHO05D007693 1.1e-07 60.1 64 45.3
CsaV3_6G052370 Cucumis sativus L. HOM05D000169 ORTHO05D007693 1.9e-07 59.3 64 50.0
Gorai.009G115300 Gossypium raimondii HOM05D000169 ORTHO05D007693 1.9e-07 59.3 63 50.8
Sp1g26370 Schrenkiella parvula HOM05D000169 ORTHO05D007693 1.9e-07 59.3 64 46.9
Aqoxy1G00111 Aquilegia oxysepala HOM05D000356 ORTHO05D007693 2.5e-07 58.9 60 55.0
Gohir.D05G111000 Gossypium hirsutum HOM05D000169 ORTHO05D007693 4.2e-07 58.2 63 49.2
Glyma.15G130500 Glycine max HOM05D000169 ORTHO05D007693 5.5e-07 57.8 64 48.4
VMungo0540G1641 Vigna mungo HOM05D000169 ORTHO05D007693 7.2e-07 57.4 64 46.9
AUR62029373 Chenopodium quinoa HOM05D000169 ORTHO05D007693 1.6e-06 56.2 63 49.2
Cc09_g04180 Coffea canephora HOM05D000169 ORTHO05D007693 1.6e-06 56.2 70 51.4
MD05G1272800 Malus domestica HOM05D000169 ORTHO05D007693 2.1e-06 55.8 52 59.6
EL10Ac1g01132 Beta vulgaris HOM05D000169 ORTHO05D007693 3.6e-06 55.1 61 47.5
Phvul.006G128100 Phaseolus vulgaris HOM05D000169 ORTHO05D007693 3.6e-06 55.1 64 48.4
Duzib235G0404 Durio zibethinus HOM05D000169 ORTHO05D007693 4.6e-06 54.7 64 46.9
CANSAT35G1370 Cannabis sativa HOM05D000169 ORTHO05D007693 7.9e-06 53.9 66 47.0


User provided reference genes

Program Settings