Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 6.0e-264 913.7 484 100.0
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 7.3e-177 624.4 394 75.9
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 9.6e-177 624.0 394 75.6
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.0e-175 617.5 368 79.1
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.9e-174 614.0 368 78.8
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 9.9e-174 614.0 388 75.5
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 2.2e-173 612.8 415 73.0
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 1.4e-167 593.6 426 68.1
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 9.0e-167 590.9 370 75.1
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.5e-166 590.1 369 74.3
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 4.5e-166 588.6 399 70.9
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 9.9e-166 587.4 370 75.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 1.7e-165 586.6 389 71.5
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 2.9e-165 585.9 369 73.7
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 3.8e-165 585.5 410 67.8
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.4e-164 582.8 402 72.1
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.4e-164 581.6 404 70.3
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 9.3e-164 580.9 408 69.1
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.2e-163 580.5 368 75.8
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 1.6e-163 580.1 411 68.6
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 2.1e-163 579.7 369 73.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 2.7e-163 579.3 369 73.2
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 2.7e-163 579.3 403 69.7
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 1.0e-162 577.4 369 72.6
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 2.3e-162 576.2 411 68.6
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 3.0e-162 575.9 366 74.0
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.1e-161 573.9 408 67.9
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 1.1e-161 573.9 389 71.7
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 3.3e-161 572.4 398 70.4
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 3.3e-161 572.4 412 68.7
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.3e-161 572.4 368 75.5
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 4.3e-161 572.0 367 74.4
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 4.3e-161 572.0 368 73.6
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 7.4e-161 571.2 410 68.5
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 9.6e-161 570.9 366 73.2
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 3.7e-160 568.9 389 71.7
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.1e-159 567.4 366 73.0
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.4e-159 567.0 333 79.9
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 4.0e-159 565.5 366 73.2
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 4.0e-159 565.5 392 69.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 5.3e-159 565.1 365 73.4
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 6.9e-159 564.7 413 66.8
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 9.0e-159 564.3 411 67.2
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 2.0e-158 563.1 411 67.2
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 2.0e-158 563.1 414 67.9
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.6e-158 562.8 369 71.8
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 3.4e-158 562.4 366 72.4
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 3.4e-158 562.4 403 68.0
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 4.5e-158 562.0 411 66.7
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 5.8e-158 561.6 412 66.5
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 2.2e-157 559.7 409 66.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.9e-157 559.3 403 68.0
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 1.9e-156 556.6 410 66.8
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 9.3e-156 554.3 406 66.7
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 2.1e-155 553.1 385 69.9
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.7e-155 552.7 410 66.1
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 6.0e-155 551.6 403 68.2
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 6.0e-155 551.6 386 69.2
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 6.0e-155 551.6 411 66.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.0e-154 550.8 375 68.0
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 1.8e-154 550.1 367 71.1
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 5.1e-154 548.5 421 63.4
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 6.7e-154 548.1 426 64.3
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.5e-153 546.2 367 70.8
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 2.5e-153 546.2 369 71.0
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.5e-153 546.2 400 67.5
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.3e-153 545.8 414 66.7
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 3.3e-153 545.8 367 70.6
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 5.6e-153 545.0 367 70.8
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 5.6e-153 545.0 367 69.5
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 1.6e-152 543.5 367 70.3
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.8e-152 542.7 367 70.3
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 6.2e-152 541.6 368 70.9
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.2e-152 541.6 375 67.2
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 3.1e-151 539.3 365 70.1
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.0e-151 538.9 366 70.5
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 4.0e-151 538.9 387 67.7
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 9.0e-151 537.7 453 62.3
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 2.0e-150 536.6 367 69.5
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.3e-149 533.9 365 69.3
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 2.9e-149 532.7 379 68.9
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 7.1e-148 528.1 332 74.7
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.0e-146 524.2 318 77.4
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.3e-146 523.1 353 72.2
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 3.0e-146 522.7 332 73.5
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 7.4e-145 518.1 393 64.6
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.4e-143 513.8 332 72.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 3.1e-143 512.7 434 61.1
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 4.1e-143 512.3 400 65.2
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.6e-142 509.6 395 64.6
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 1.3e-141 507.3 417 61.4
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 3.1e-135 486.1 410 62.0
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.2e-132 475.7 323 69.7
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.0e-129 466.8 368 64.9
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 2.0e-129 466.8 279 78.5
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 1.8e-127 460.3 367 64.9
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 3.4e-126 456.1 330 67.0
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 1.7e-125 453.8 364 61.0
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.3e-122 443.4 336 66.1
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 8.8e-122 441.4 358 58.4
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.7e-121 438.7 324 67.0
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 1.3e-117 427.6 367 61.3
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 5.2e-106 389.0 366 57.4
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 7.5e-105 385.2 277 70.8
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.6e-102 377.5 248 73.0
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 4.5e-102 375.9 411 50.6
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 8.3e-96 355.1 304 57.9
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 7.3e-92 342.0 207 76.3
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.7e-88 330.9 363 45.5
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 3.0e-85 320.1 362 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 1.8e-82 310.8 403 41.4
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 6.0e-78 295.8 299 55.5
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 2.5e-76 290.4 170 80.0
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 3.3e-76 290.0 174 78.2
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.1e-74 285.0 213 67.1
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 2.2e-72 277.3 280 48.2
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 3.5e-62 243.4 242 53.3
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 1.8e-58 231.1 200 59.0
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 9.0e-58 228.8 202 58.9
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 3.4e-57 226.9 297 42.8
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 4.4e-57 226.5 206 57.3
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.9e-55 221.1 196 58.2
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 6.2e-51 206.1 161 63.4
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-48 198.4 132 73.5
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 6.7e-45 186.0 238 46.2
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 6.4e-40 169.5 126 73.0
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 3.0e-37 160.6 128 60.9
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 6.9e-34 149.4 87 77.0
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.0e-29 135.6 225 39.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 5.7e-28 129.8 282 33.7
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 3.1e-26 124.0 75 77.3
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.8e-21 108.2 67 76.1
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 2.5e-20 104.4 133 45.9
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 1.2e-17 95.5 120 43.3
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 5.9e-17 93.2 69 63.8
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 1.4e-15 88.6 71 64.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.3e-13 81.3 63 63.5
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 9.7e-12 75.9 131 33.6
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 2.4e-10 71.2 382 22.8
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 1.5e-07 62.0 77 41.6
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 9.4e-07 59.3 32 87.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 1.2e-06 58.9 37 64.9
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 6.1e-06 56.6 36 61.1


User provided reference genes

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