Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g06567_MAGBIO Magnolia biondii HOM05D002362 ORTHO05D002465 8.8e-47 189.9 92 100.0
MBI16_g00638_MAGBIO Magnolia biondii HOM05D002362 ORTHO05D002465 5.9e-11 70.9 34 97.1
Ah.02g129290 Amaranthus hybridus HOM05D002362 ORTHO05D002465 2.1e-08 62.4 79 44.3
AUR62005867 Chenopodium quinoa HOM05D002362 ORTHO05D002465 4.7e-08 61.2 34 79.4
AUR62032859 Chenopodium quinoa HOM05D002362 ORTHO05D002465 4.7e-08 61.2 34 79.4
MBI18_g42978_MAGBIO Magnolia biondii HOM05D002459 ORTHO05D003006 4.7e-08 61.2 30 90.0
Manes.01G031200 Manihot esculenta HOM05D002362 ORTHO05D002465 8.0e-08 60.5 40 72.5
Actinidia33238 Actinidia chinensis HOM05D002362 ORTHO05D002465 1.0e-07 60.1 34 76.5
Nn3g17357 Nelumbo nucifera HOM05D002362 ORTHO05D002465 1.0e-07 60.1 34 76.5
Potri.008G092400 Populus trichocarpa HOM05D002362 ORTHO05D002465 1.0e-07 60.1 34 79.4
Potri.010G162500 Populus trichocarpa HOM05D002362 ORTHO05D002465 1.0e-07 60.1 34 79.4
Sabra08G0069200 Salix brachista HOM05D002362 ORTHO05D002465 1.0e-07 60.1 34 79.4
MSTRG.13438 Avicennia marina HOM05D002362 ORTHO05D002465 1.4e-07 59.7 34 76.5
PSO478G3031 Papaver somniferum HOM05D002362 ORTHO05D002465 1.4e-07 59.7 34 79.4
Lj3C1032G18 Lonicera japonica HOM05D002362 ORTHO05D002465 1.8e-07 59.3 34 73.5
Sp5g24430 Schrenkiella parvula HOM05D002362 ORTHO05D002465 1.8e-07 59.3 34 76.5
vmacro16358 Vaccinium macrocarpon HOM05D002362 ORTHO05D002465 1.8e-07 59.3 34 79.4
EL10Ac6g13283 Beta vulgaris HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 73.5
BcaB03g15899 Brassica carinata HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
A07p35680 Brassica napus HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
C06p40540 Brassica napus HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
BolC6t39377H Brassica oleracea HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
BraA07t31156Z Brassica rapa HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
MD13G1066700 Malus domestica HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
MD16G1065900 Malus domestica HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
Oeu057651.1 Olea europaea HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 73.5
Prupe.1G281200 Prunus persica HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 76.5
Rhsim12G0133600 Rhododendron simsii HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 73.5
Hund25200 Selenicereus undatus HOM05D002362 ORTHO05D002465 2.3e-07 58.9 34 70.6
PSO017G0002 Papaver somniferum HOM05D002362 ORTHO05D002465 3.0e-07 58.5 34 76.5
Psat2g127360 Pisum sativum HOM05D002362 ORTHO05D002465 3.0e-07 58.5 34 76.5
Atru.chr11.1701 Acer truncatum HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 70.6
BcaC03g15078 Brassica carinata HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
A02p15860 Brassica napus HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
C02p26320 Brassica napus HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
BolC2t08704H Brassica oleracea HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
Ciclev10031839m.g Citrus clementina HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 70.6
Hma1.2p1_0354F.1_g133680 Hydrangea macrophylla HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
SGA_v2.0_scaffold287G47148 Striga asiatica HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 70.6
THA.LOC104822025 Tarenaya hassleriana HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
TAR622G0656 Trochodendron aralioides HOM05D002362 ORTHO05D002465 4.0e-07 58.2 34 73.5
Aa31LG4G11480 Aethionema arabicum HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 70.6
FvH4_4g30570 Fragaria vesca HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 73.5
FAN07G1369 Fragaria x ananassa HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 73.5
FAN12G2889 Fragaria x ananassa HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 73.5
FAN17G1413 Fragaria x ananassa HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 73.5
Gorai.013G090500 Gossypium raimondii HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 73.5
unitig_744.g24285 Utricularia gibba HOM05D002362 ORTHO05D002465 5.2e-07 57.8 34 70.6
Aqoxy3G00470 Aquilegia oxysepala HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 76.5
ClCG09G022070 Citrullus lanatus HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 76.5
MELO3C002986.2 Cucumis melo HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 76.5
CsaV3_5G020790 Cucumis sativus L. HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 76.5
CsaV3_5G022960 Cucumis sativus L. HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 76.5
Glyma.01G054300 Glycine max HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 73.5
Glyma.02G112800 Glycine max HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 73.5
Lalb_Chr04g0255811 Lupinus albus HOM05D002362 ORTHO05D002465 6.8e-07 57.4 33 72.7
RcHm_v2.0_Chr4g0438971 Rosa chinensis HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 70.6
Thecc.02G337300 Theobroma cacao HOM05D002362 ORTHO05D002465 6.8e-07 57.4 34 70.6
CARHR062260 Cardamine hirsuta HOM05D002362 ORTHO05D002465 8.9e-07 57.0 34 73.5
DCAR_027446 Daucus carota HOM05D002362 ORTHO05D002465 8.9e-07 57.0 34 70.6
PGR102G1537 Punica granatum HOM05D002362 ORTHO05D002465 8.9e-07 57.0 34 70.6
Ca_04896_v3 Cicer arietinum L. HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 70.6
Thhalv10018736m.g Eutrema salsugineum HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 73.5
Lj2g0015054 Lotus japonicus HOM05D002362 ORTHO05D002465 1.2e-06 56.6 41 68.3
Lalb_Chr10g0098551 Lupinus albus HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 70.6
Medtr5g043180 Medicago truncatula HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 70.6
TPR.G19949 Trifolium pratense HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 70.6
VMungo1215G2569 Vigna mungo HOM05D002362 ORTHO05D002465 1.2e-06 56.6 34 70.6
AL2G28490 Arabidopsis lyrata HOM05D002362 ORTHO05D002465 1.5e-06 56.2 34 73.5
arahy.Tifrunner.gnm1.ann1.42ETRE Arachis hypogaea HOM05D002362 ORTHO05D002465 1.5e-06 56.2 33 72.7
arahy.Tifrunner.gnm1.ann1.8HGI8X Arachis hypogaea HOM05D002362 ORTHO05D002465 1.5e-06 56.2 33 72.7
Cc11_g12430 Coffea canephora HOM05D002362 ORTHO05D002465 1.5e-06 56.2 34 73.5
Duzib251G0312 Durio zibethinus HOM05D002362 ORTHO05D002465 1.5e-06 56.2 34 70.6
ECA246G3544 Erigeron canadensis HOM05D002362 ORTHO05D002465 1.5e-06 56.2 34 70.6
Sed0001155 Sechium edule HOM05D002362 ORTHO05D002465 1.5e-06 56.2 34 73.5
Cfa008916 Carpinus fangiana HOM05D002362 ORTHO05D002465 2.0e-06 55.8 34 70.6
Haze_11943 Corylus avellana HOM05D002362 ORTHO05D002465 2.0e-06 55.8 34 70.6
Eucgr.B03187 Eucalyptus grandis HOM05D002362 ORTHO05D002465 2.0e-06 55.8 34 70.6
Nitab4.5_0004304g0010 Nicotiana tabacum HOM05D002362 ORTHO05D002465 2.0e-06 55.8 34 67.6
Peaxi162Scf00364g00135 Petunia axillaris HOM05D002362 ORTHO05D002465 2.0e-06 55.8 34 67.6
Lsat_1_v5_gn_3_51640 Lactuca sativa HOM05D002362 ORTHO05D002465 2.6e-06 55.5 34 70.6
Migut.L01229 Erythranthe guttata HOM05D002362 ORTHO05D002465 3.4e-06 55.1 34 70.6
QL03p070031 Quercus lobata HOM05D002362 ORTHO05D002465 3.4e-06 55.1 34 73.5
GSVIVG01010097001 Vitis vinifera HOM05D002362 ORTHO05D002465 3.4e-06 55.1 34 70.6
Gohir.D05G305800 Gossypium hirsutum HOM05D002362 ORTHO05D002465 4.4e-06 54.7 34 70.6
Gohir.A05G305700 Gossypium hirsutum HOM05D002362 ORTHO05D002465 5.7e-06 54.3 34 67.6
Gorai.009G325800 Gossypium raimondii HOM05D002362 ORTHO05D002465 5.7e-06 54.3 34 67.6
AT1G69380 Arabidopsis thaliana HOM05D002362 ORTHO05D002465 7.5e-06 53.9 34 67.6
CANSAT64G1366 Cannabis sativa HOM05D002362 ORTHO05D002465 7.5e-06 53.9 34 64.7
CAN.G1340.19 Capsicum annuum HOM05D002362 ORTHO05D002465 7.5e-06 53.9 34 67.6


User provided reference genes

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