Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.1e-42 176.4 99 100.0
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 9.9e-12 73.6 48 79.2
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 4.9e-11 71.2 68 60.3
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 2.4e-10 68.9 65 55.4
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 2.4e-10 68.9 67 56.7
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 4.1e-10 68.2 54 68.5
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 5.4e-10 67.8 67 61.2
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 1.6e-09 66.2 49 67.3
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 1.6e-09 66.2 54 63.0
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 1.6e-09 66.2 56 62.5
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 2.1e-09 65.9 54 63.0
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 2.1e-09 65.9 55 60.0
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 2.7e-09 65.5 52 67.3
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 2.7e-09 65.5 49 67.3
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 2.7e-09 65.5 52 67.3
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.7e-09 65.5 54 63.0
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.7e-09 65.5 52 67.3
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 3.5e-09 65.1 53 66.0
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 3.5e-09 65.1 46 73.9
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 4.6e-09 64.7 55 61.8
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 6.0e-09 64.3 58 55.2
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 7.8e-09 63.9 71 53.5
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 7.8e-09 63.9 55 69.1
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 1.0e-08 63.5 46 71.7
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 1.3e-08 63.2 64 54.7
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.3e-08 63.2 57 57.9
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 1.7e-08 62.8 54 61.1
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 3.0e-08 62.0 55 56.4
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 3.0e-08 62.0 46 71.7
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 3.0e-08 62.0 68 50.0
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 3.9e-08 61.6 55 58.2
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 5.1e-08 61.2 57 56.1
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.6e-08 60.8 55 63.6
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 6.6e-08 60.8 54 63.0
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 6.6e-08 60.8 55 56.4
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 1.1e-07 60.1 55 67.3
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 1.5e-07 59.7 44 65.9
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 1.9e-07 59.3 61 52.5
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.9e-07 59.3 49 65.3
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 4.3e-07 58.2 63 54.0
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 7.3e-07 57.4 44 68.2
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 9.5e-07 57.0 53 60.4
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 9.5e-07 57.0 46 63.0
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 1.2e-06 56.6 55 69.1
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 1.2e-06 56.6 46 60.9
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.6e-06 56.2 55 67.3
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.6e-06 56.2 46 63.0
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 2.1e-06 55.8 61 62.3
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 2.1e-06 55.8 44 65.9
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.8e-06 55.5 52 55.8
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 2.8e-06 55.5 52 55.8
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 2.8e-06 55.5 51 58.8
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 3.6e-06 55.1 51 56.9
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 3.6e-06 55.1 45 62.2
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 3.6e-06 55.1 50 58.0
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 3.6e-06 55.1 54 51.9
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 4.7e-06 54.7 53 54.7
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 4.7e-06 54.7 44 61.4
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.7e-06 54.7 44 61.4
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.7e-06 54.7 44 61.4
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 4.7e-06 54.7 44 61.4
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 4.7e-06 54.7 53 54.7
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 6.2e-06 54.3 48 62.5
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 6.2e-06 54.3 51 56.9
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 8.1e-06 53.9 55 52.7


User provided reference genes

Program Settings