Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.7e-64 248.1 124 100.0
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.6e-59 231.1 124 91.9
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.5e-49 198.7 115 87.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.4e-28 127.1 125 56.8
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.8e-26 122.9 121 56.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.3e-25 118.6 86 69.8
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 3.3e-25 118.6 120 57.5
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-24 116.7 120 50.0
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.8e-24 114.8 123 50.4
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 4.8e-24 114.8 126 50.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.8e-23 112.8 135 47.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.8e-23 112.8 129 50.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 7.0e-23 110.9 112 54.5
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.6e-22 109.8 112 54.5
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.7e-22 109.0 112 51.8
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.5e-22 108.2 112 48.2
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.5e-22 108.2 112 50.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.0e-21 107.1 119 51.3
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.3e-21 106.7 119 51.3
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.7e-21 106.3 110 51.8
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.2e-21 105.9 111 51.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.2e-21 105.9 130 46.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.8e-21 105.1 110 51.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.0e-21 104.8 113 50.4
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 6.5e-21 104.4 117 49.6
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.5e-20 103.2 122 45.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.5e-20 103.2 123 48.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.9e-20 102.8 123 48.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.9e-20 102.8 118 48.3
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.9e-20 102.8 124 46.0
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.5e-20 102.4 111 48.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 3.2e-20 102.1 112 50.0
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.2e-20 102.1 113 49.6
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 4.2e-20 101.7 115 51.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.5e-20 101.3 123 47.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.5e-20 101.3 123 47.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 5.5e-20 101.3 115 47.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 9.4e-20 100.5 117 47.9
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 9.4e-20 100.5 112 45.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.2e-19 100.1 121 52.1
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.2e-19 100.1 129 42.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.2e-19 100.1 110 49.1
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.2e-19 100.1 115 51.3
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-19 99.8 117 47.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.6e-19 99.8 123 48.8
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.1e-19 99.4 117 47.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.1e-19 99.4 110 50.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.1e-19 99.4 110 48.2
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-19 99.0 123 48.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 2.7e-19 99.0 118 47.5
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 3.6e-19 98.6 115 47.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.1e-19 97.8 114 48.2
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 6.1e-19 97.8 130 45.4
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.1e-19 97.8 113 50.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.0e-19 97.4 115 49.6
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.0e-18 97.1 124 44.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.4e-18 96.7 122 45.1
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.3e-18 95.9 129 44.2
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 2.3e-18 95.9 119 49.6
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 3.0e-18 95.5 123 49.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.0e-18 95.1 119 42.9
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.0e-18 95.1 119 42.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.2e-18 94.7 116 49.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 8.8e-18 94.0 116 45.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 8.8e-18 94.0 112 46.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 8.8e-18 94.0 125 44.0
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-17 93.6 128 46.9
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.5e-17 93.2 116 50.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.0e-17 92.8 111 50.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.6e-17 92.4 116 47.4
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.4e-17 92.0 121 46.3
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.4e-17 92.0 119 43.7
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.4e-17 91.7 121 45.5
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 4.4e-17 91.7 116 47.4
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 4.4e-17 91.7 123 44.7
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 7.5e-17 90.9 108 50.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 7.5e-17 90.9 114 48.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 7.5e-17 90.9 109 48.6
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.5e-17 90.9 139 46.8
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.3e-16 90.1 116 50.0
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.7e-16 89.7 139 42.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.7e-16 89.7 115 50.4
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.7e-16 89.7 115 50.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.2e-16 89.4 119 49.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.7e-16 88.6 116 44.8
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.7e-16 88.6 122 42.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.7e-16 88.6 104 46.2
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.3e-16 87.8 113 44.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.1e-15 87.0 114 44.7
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-15 86.7 113 45.1
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-15 86.7 116 44.0
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-15 86.7 143 37.1
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.8e-15 86.3 114 47.4
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.8e-15 86.3 114 47.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.8e-15 86.3 114 45.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-15 86.3 113 44.2
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-15 85.9 107 47.7
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.4e-15 85.9 120 45.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.4e-15 85.9 113 47.8
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.4e-15 85.9 118 46.6
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.4e-15 85.9 118 46.6
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.1e-15 85.5 116 46.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.1e-15 85.5 113 44.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.1e-15 85.5 112 46.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-15 85.1 106 48.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 5.4e-15 84.7 118 45.8
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.4e-15 84.7 109 45.9
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 7.0e-15 84.3 114 43.9
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 9.1e-15 84.0 114 43.9
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-14 82.8 109 44.0
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.0e-14 82.8 119 45.4
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.7e-14 82.4 122 41.8
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 3.5e-14 82.0 113 46.9
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 4.5e-14 81.6 111 44.1
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.5e-14 81.6 111 44.1
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 4.5e-14 81.6 111 44.1
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.5e-14 81.6 111 45.9
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.5e-14 81.6 121 42.1
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 7.7e-14 80.9 158 32.9
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.0e-13 80.5 113 42.5
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.3e-13 80.1 134 40.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.7e-13 79.7 111 43.2
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.7e-13 79.7 111 43.2
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.7e-13 79.7 114 42.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.2e-13 79.3 114 43.0
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.9e-13 79.0 116 42.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 2.9e-13 79.0 114 44.7
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 6.5e-13 77.8 162 35.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.5e-13 77.4 108 46.3
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 8.5e-13 77.4 121 40.5
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.5e-12 76.6 78 52.6
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.9e-12 76.3 127 37.0
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.9e-12 76.3 134 39.6
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.5e-12 75.9 126 41.3
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 3.2e-12 75.5 153 40.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.2e-12 75.5 121 41.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.2e-12 75.1 112 41.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 5.5e-12 74.7 101 47.5
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.5e-12 74.7 124 34.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 5.5e-12 74.7 131 38.9
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 7.2e-12 74.3 98 46.9
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 7.2e-12 74.3 139 36.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-11 73.6 115 42.6
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-11 73.6 131 40.5
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.1e-11 72.8 162 33.3
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 3.6e-11 72.0 165 30.3
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.7e-11 71.6 116 45.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.0e-11 70.9 124 40.3
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.0e-11 70.9 101 46.5
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 8.0e-11 70.9 124 37.9
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.4e-10 70.1 116 40.5
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.8e-10 69.7 120 37.5
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.0e-10 68.6 123 39.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.5e-09 66.6 80 47.5
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.6e-09 65.9 110 40.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 9.8e-09 63.9 84 45.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 9.8e-09 63.9 84 45.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.7e-08 63.2 127 39.4
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.1e-07 60.5 137 35.0
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.0e-07 57.8 96 42.7


User provided reference genes

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