Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.8e-64 247.7 124 100.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.0e-59 230.7 124 91.9
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.0e-50 203.4 109 90.8
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.0e-27 124.0 86 72.1
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.0e-26 123.6 125 55.2
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.7e-24 116.3 117 54.7
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.7e-24 115.2 118 52.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 3.7e-24 115.2 112 55.4
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.2e-24 114.0 112 55.4
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.1e-23 113.6 126 50.0
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.4e-23 113.2 112 50.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 3.1e-23 112.1 110 54.5
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.3e-23 111.3 111 54.1
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 9.1e-23 110.5 116 56.9
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-22 110.2 110 53.6
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.6e-22 109.8 112 52.7
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.6e-22 109.8 119 52.1
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.0e-22 109.4 129 48.1
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.0e-22 109.4 113 52.2
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 3.5e-22 108.6 113 49.6
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 5.9e-22 107.8 114 49.1
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 7.7e-22 107.5 119 51.3
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.0e-21 107.1 135 45.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.3e-21 106.7 113 51.3
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-21 105.9 117 50.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.2e-21 105.9 115 53.0
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.9e-21 105.5 117 49.6
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.9e-21 105.5 110 51.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 3.8e-21 105.1 115 53.0
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.8e-21 105.1 124 46.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 6.5e-21 104.4 130 46.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.5e-21 104.0 123 48.8
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.5e-20 103.2 115 51.3
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.9e-20 102.8 112 50.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.5e-20 102.4 113 52.2
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.5e-20 102.4 112 47.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.2e-20 102.1 123 48.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.2e-20 102.1 123 48.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.2e-20 101.7 123 48.0
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.2e-20 101.7 110 50.9
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 4.2e-20 101.7 118 47.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 5.5e-20 101.3 111 48.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.2e-20 100.9 112 46.4
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 9.4e-20 100.5 117 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 9.4e-20 100.5 110 48.2
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.4e-20 100.5 117 47.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 9.4e-20 100.5 122 48.4
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-19 100.1 121 49.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.2e-19 100.1 114 49.1
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-19 99.8 122 48.4
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 2.7e-19 99.0 115 49.6
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 4.7e-19 98.2 115 47.0
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 6.1e-19 97.8 124 45.2
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 8.0e-19 97.4 116 48.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.0e-18 97.1 113 46.9
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.8e-18 96.3 111 51.4
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.3e-18 95.9 122 47.5
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.0e-18 95.5 117 46.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 4.0e-18 95.1 117 50.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 4.0e-18 95.1 118 45.8
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 4.0e-18 95.1 116 50.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.0e-18 95.1 129 45.0
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 5.2e-18 94.7 124 46.8
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.8e-18 94.4 114 46.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 6.8e-18 94.4 130 44.6
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.8e-18 94.0 121 46.3
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.0e-17 92.8 122 42.6
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-17 92.4 119 46.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.4e-17 92.0 116 47.4
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 3.4e-17 92.0 125 44.0
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.4e-17 92.0 116 50.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.4e-17 92.0 119 47.1
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.4e-17 91.7 119 42.0
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.4e-17 91.7 119 42.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.7e-17 91.3 119 42.0
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.3e-16 90.1 108 50.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.7e-16 89.7 114 46.5
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.2e-16 89.4 136 42.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.2e-16 89.4 104 47.1
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.8e-16 89.0 116 48.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.8e-16 88.2 115 48.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.8e-16 88.2 115 48.7
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 8.3e-16 87.4 143 45.5
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 8.3e-16 87.4 119 47.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-15 87.0 116 44.0
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.1e-15 87.0 122 41.0
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.8e-15 86.3 111 45.9
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.4e-15 85.9 114 45.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 4.1e-15 85.1 114 44.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 4.1e-15 85.1 109 49.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.1e-15 85.1 113 43.4
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.1e-15 85.1 116 43.1
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.1e-15 85.1 115 47.0
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 5.4e-15 84.7 114 46.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 5.4e-15 84.7 114 46.5
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 5.4e-15 84.7 113 44.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 7.0e-15 84.3 112 46.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.1e-15 84.0 117 44.4
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.1e-15 84.0 117 44.4
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-14 83.2 109 45.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.6e-14 83.2 113 42.5
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.0e-14 82.8 114 43.0
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.5e-14 81.6 113 41.6
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 4.5e-14 81.6 120 43.3
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.7e-14 80.9 122 40.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 7.7e-14 80.9 113 42.5
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.7e-14 80.9 121 43.0
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-13 80.5 116 48.3
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-13 80.5 107 48.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.0e-13 80.5 109 43.1
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.0e-13 80.5 118 41.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.0e-13 80.5 143 35.0
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-13 80.1 130 41.5
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.3e-13 80.1 121 42.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.7e-13 79.7 114 42.1
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.7e-13 79.7 106 49.1
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.7e-13 79.7 114 42.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.7e-13 79.7 112 44.6
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.7e-13 79.7 165 37.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.2e-13 79.3 158 32.3
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.9e-13 79.0 111 45.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.8e-13 78.6 114 42.1
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.8e-13 78.6 134 39.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.0e-13 78.2 113 43.4
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 6.5e-13 77.8 127 37.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 6.5e-13 77.8 111 42.3
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 6.5e-13 77.8 111 42.3
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 6.5e-13 77.8 111 42.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 8.5e-13 77.4 111 42.3
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 8.5e-13 77.4 111 42.3
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.1e-12 77.0 107 47.7
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.1e-12 77.0 113 43.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.9e-12 76.3 116 41.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.9e-12 76.3 134 38.1
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 2.5e-12 75.9 116 42.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.2e-12 75.5 100 47.0
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.2e-12 75.5 78 51.3
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.2e-12 74.3 115 42.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-11 73.6 120 37.5
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.2e-11 73.6 162 34.0
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.6e-11 73.2 124 34.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.1e-11 72.8 116 45.7
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.7e-11 72.4 124 37.9
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.6e-11 72.0 126 39.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.7e-11 71.6 131 38.9
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.7e-11 71.6 100 46.0
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.7e-11 71.6 121 38.0
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 4.7e-11 71.6 142 38.7
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.4e-10 70.1 165 30.3
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-10 70.1 139 35.3
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 1.8e-10 69.7 98 46.9
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.0e-10 68.9 127 38.6
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 8.8e-10 67.4 123 38.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.7e-08 63.2 137 34.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.2e-08 62.8 110 39.1
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 2.2e-08 62.8 80 46.2
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.8e-07 59.7 84 41.7
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.8e-07 59.7 84 41.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 4.1e-07 58.5 127 37.8
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.4e-07 58.2 95 42.1


User provided reference genes

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