Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 9.5e-300 1032.7 514 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.3e-227 793.1 510 76.5
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.7e-227 792.7 512 74.6
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 4.7e-222 774.6 505 73.3
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.8e-219 765.4 509 72.9
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 3.1e-218 761.9 507 72.4
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 9.1e-218 760.4 502 73.3
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.5e-217 759.6 491 74.7
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 6.5e-216 754.2 510 71.2
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 6.5e-216 754.2 512 71.1
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.1e-215 753.4 511 71.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 1.4e-215 753.1 512 70.5
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.9e-215 752.7 490 72.7
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.9e-215 752.7 512 71.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 3.2e-215 751.9 494 73.5
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 4.2e-215 751.5 490 72.4
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 5.5e-215 751.1 516 70.5
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.5e-215 751.1 516 70.7
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.4e-215 750.4 492 72.2
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 9.4e-215 750.4 492 72.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-214 750.0 510 71.6
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.7e-214 748.8 481 76.5
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.7e-214 748.0 516 70.5
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 4.7e-214 748.0 489 73.4
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 6.1e-214 747.7 481 73.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.0e-213 746.9 489 72.4
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 2.3e-213 745.7 512 70.5
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 8.8e-213 743.8 511 70.6
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 8.8e-213 743.8 491 71.7
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 8.8e-213 743.8 488 72.7
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 1.1e-212 743.4 510 70.6
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.0e-212 742.7 510 70.6
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.0e-212 742.7 511 71.6
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.6e-212 742.3 512 70.1
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 3.3e-212 741.9 489 72.6
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.3e-211 740.0 488 71.9
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 1.3e-211 740.0 512 69.5
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 6.3e-211 737.6 511 70.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 6.3e-211 737.6 513 70.6
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 4.1e-210 734.9 500 71.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 5.3e-210 734.6 511 70.3
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 5.3e-210 734.6 512 69.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 9.1e-210 733.8 486 72.0
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.2e-209 733.4 512 68.9
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.5e-209 731.9 511 70.1
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 4.5e-209 731.5 489 71.4
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 7.7e-209 730.7 489 70.3
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.7e-208 729.6 483 72.0
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 5.0e-208 728.0 443 77.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 5.0e-208 728.0 510 68.0
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.5e-207 726.5 473 74.2
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 7.2e-207 724.2 509 68.8
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 9.4e-207 723.8 507 68.2
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.2e-206 723.4 512 67.6
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 3.6e-206 721.8 486 72.2
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.8e-205 717.6 493 69.2
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.0e-204 716.1 486 70.8
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 2.0e-204 716.1 512 69.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 2.6e-204 715.7 465 74.2
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.7e-203 713.0 485 70.1
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 2.8e-203 712.2 487 71.5
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.6e-201 706.4 505 68.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.6e-201 706.4 510 71.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-201 705.7 486 69.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 7.7e-201 704.1 486 69.8
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.0e-200 703.7 512 67.8
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.3e-200 703.4 488 68.9
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.3e-200 703.4 513 67.1
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.0e-200 701.4 485 69.7
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 6.5e-200 701.0 490 68.6
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.1e-199 700.3 486 68.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 4.2e-199 698.4 485 69.1
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 5.5e-199 698.0 510 66.5
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 7.2e-199 697.6 484 69.6
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.6e-198 696.4 473 70.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.6e-198 696.4 509 66.8
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 1.6e-198 696.4 474 70.5
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.1e-198 696.0 496 67.7
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.1e-198 696.0 487 68.2
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 2.7e-198 695.7 481 69.4
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 3.0e-197 692.2 485 68.7
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 3.0e-197 692.2 485 68.7
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 3.0e-197 692.2 485 68.7
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 5.2e-197 691.4 483 66.9
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.0e-196 689.5 471 69.6
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.4e-196 688.3 509 66.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 9.8e-196 687.2 500 65.0
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 8.3e-195 684.1 510 66.1
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 2.4e-194 682.6 442 72.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.5e-191 673.3 487 67.8
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.5e-191 673.3 466 69.3
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 7.2e-191 671.0 468 68.4
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.2e-188 663.7 504 64.3
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 5.7e-188 661.4 462 69.5
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 5.7e-188 661.4 467 68.3
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 5.7e-188 661.4 479 65.3
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 7.5e-188 661.0 440 72.0
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.3e-187 660.2 472 66.5
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.8e-186 656.4 441 71.7
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.7e-185 652.5 467 68.5
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 1.2e-182 643.7 443 69.1
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.0e-181 638.6 474 66.5
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.3e-179 630.9 453 66.9
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 8.3e-179 630.9 406 73.4
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-176 622.5 468 65.4
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 3.3e-175 619.0 479 64.7
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.7e-174 615.1 469 63.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 8.9e-173 610.9 421 71.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.7e-168 596.7 388 72.2
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 6.8e-165 584.7 488 62.5
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.1e-157 559.3 442 62.7
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.2e-155 553.1 471 56.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 6.4e-155 551.6 504 55.6
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 1.2e-153 547.4 490 56.1
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 3.3e-151 539.3 482 56.0
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.1e-146 524.2 326 77.9
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 4.6e-145 518.8 348 70.7
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.1e-137 493.4 462 53.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.6e-134 483.8 339 68.1
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.4e-133 480.7 318 72.3
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.2e-126 455.3 296 74.0
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.1e-125 454.5 296 73.0
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.4e-125 453.4 466 50.0
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.6e-121 440.7 293 72.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 5.5e-114 415.6 383 55.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.3e-104 383.6 622 38.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.1e-98 364.8 250 70.0
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.1e-97 360.5 560 40.5
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 2.0e-87 327.4 458 42.8
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 1.6e-84 317.8 468 40.4
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 8.3e-70 268.9 155 79.4
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 4.4e-55 219.9 212 51.4
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 6.6e-51 206.1 240 48.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.5e-39 168.3 178 51.7
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.4e-39 166.8 108 76.9
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.3e-35 154.5 312 34.0
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 7.3e-34 149.4 237 40.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.9e-30 137.5 119 57.1
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 1.4e-29 135.2 87 72.4
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.4e-29 135.2 100 65.0
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 9.0e-24 115.9 76 71.1
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 6.0e-20 103.2 68 67.6
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.0e-19 102.4 68 75.0
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 5.1e-19 100.1 90 57.8
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 3.8e-06 57.4 36 77.8


User provided reference genes

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