Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI15_g15732_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D243769 1.2e-140 503.1 242 100.0
MBI18_g30544_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 2.9e-73 279.3 274 60.6
MBI17_g28777_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 1.1e-53 214.2 290 48.3
MBI14_g13658_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D030039 2.2e-52 209.9 205 58.5
MBI05_g34474_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D244617 3.0e-22 109.8 59 86.4
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 7.0e-19 98.6 52 90.4
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 5.0e-17 92.4 52 80.8
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 8.5e-17 91.7 52 82.7
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 8.5e-17 91.7 52 80.8
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 1.5e-16 90.9 52 80.8
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 1.9e-16 90.5 52 78.8
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 1.9e-16 90.5 52 78.8
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 2.5e-16 90.1 52 78.8
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 2.5e-16 90.1 52 78.8
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 2.5e-16 90.1 52 76.9
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 2.5e-16 90.1 52 78.8
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 3.2e-16 89.7 52 78.8
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 4.2e-16 89.4 52 75.0
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 4.2e-16 89.4 52 76.9
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 4.2e-16 89.4 52 76.9
Actinidia14067 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 78.8
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 78.8
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 75.0
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 76.9
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 76.9
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 76.9
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 75.0
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 5.5e-16 89.0 52 75.0
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 7.2e-16 88.6 52 78.8
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 7.2e-16 88.6 52 80.8
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 75.0
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 75.0
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 78.8
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 78.8
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 78.8
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 76.9
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 9.4e-16 88.2 52 76.9
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 1.2e-15 87.8 52 75.0
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 1.6e-15 87.4 52 76.9
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 1.6e-15 87.4 50 76.0
VMungo0647G1280 Vigna mungo HOM05D004980 ORTHO05D006505 1.6e-15 87.4 52 75.0
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 75.0
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 73.1
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 75.0
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 75.0
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
Nitab4.5_0002826g0110 Nicotiana tabacum HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 76.9
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.1e-15 87.0 52 75.0
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 2.7e-15 86.7 52 76.9
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 2.7e-15 86.7 52 76.9
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 2.7e-15 86.7 52 78.8
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 2.7e-15 86.7 52 78.8
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 3.6e-15 86.3 52 76.9
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 4.7e-15 85.9 52 75.0
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 4.7e-15 85.9 52 73.1
CAN.G1376.1 Capsicum annuum HOM05D004980 ORTHO05D021411 6.1e-15 85.5 52 73.1
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 75.0
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 76.9
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 76.9
Lj1A365T16 Lonicera japonica HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 75.0
Nitab4.5_0000328g0140 Nicotiana tabacum HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 75.0
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 73.1
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 73.1
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 8.0e-15 85.1 52 73.1
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 1.0e-14 84.7 52 71.2
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 1.0e-14 84.7 52 71.2
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 1.4e-14 84.3 52 78.8
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 1.4e-14 84.3 52 71.2
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 1.4e-14 84.3 52 73.1
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 1.4e-14 84.3 52 73.1
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 1.4e-14 84.3 52 71.2
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 1.8e-14 84.0 52 71.2
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 1.8e-14 84.0 52 73.1
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.8e-14 84.0 54 72.2
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 2.3e-14 83.6 52 71.2
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 2.3e-14 83.6 52 71.2
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 2.3e-14 83.6 52 71.2
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 2.3e-14 83.6 52 73.1
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 3.0e-14 83.2 52 75.0
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 4.0e-14 82.8 52 73.1
CDE02G3733 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 5.2e-14 82.4 52 73.1
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 5.2e-14 82.4 52 69.2
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 6.8e-14 82.0 53 69.8
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 6.8e-14 82.0 52 75.0
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 6.8e-14 82.0 52 71.2
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 1.2e-13 81.3 52 71.2
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 1.2e-13 81.3 52 73.1
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 1.2e-13 81.3 52 71.2
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.2e-13 81.3 52 73.1
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 1.5e-13 80.9 52 71.2
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 1.5e-13 80.9 52 65.4
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 1.5e-13 80.9 52 67.3
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 1.5e-13 80.9 52 73.1
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 3.4e-13 79.7 52 67.3
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 7.5e-13 78.6 52 69.2
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 7.5e-13 78.6 52 69.2
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 7.5e-13 78.6 52 67.3
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 7.5e-13 78.6 52 69.2
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 9.8e-13 78.2 51 68.6
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 9.8e-13 78.2 52 67.3
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 1.7e-12 77.4 52 67.3
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 1.7e-12 77.4 52 65.4
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 2.8e-12 76.6 56 60.7
Os02g0525400 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 6.3e-12 75.5 52 63.5
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 8.3e-12 75.1 52 65.4
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 3.1e-11 73.2 76 56.6
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 9.2e-11 71.6 52 59.6
MBI14_g38380_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D028395 1.6e-10 70.9 36 91.7
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 5.9e-10 68.9 52 55.8
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 1.3e-09 67.8 126 37.3
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 1.7e-09 67.4 52 57.7
Cre09.g402034 Chlamydomonas reinhardtii HOM05D004980 ORTHO05D006505 2.3e-09 67.0 52 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2510 Anthoceros agrestis HOM05D004980 ORTHO05D006505 3.8e-09 66.2 52 53.8
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 3.8e-09 66.2 48 66.7
MBI18_g25949_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 3.8e-09 66.2 37 83.8
MBI18_g17721_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 5.0e-09 65.9 60 55.0
MBI18_g46938_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 5.0e-09 65.9 37 83.8
Mapoly0013s0163 Marchantia polymorpha HOM05D004980 ORTHO05D006505 5.0e-09 65.9 52 59.6
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 6.6e-09 65.5 64 54.7
MBI18_g19502_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 6.6e-09 65.5 72 47.2
MBI18_g28765_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 6.6e-09 65.5 72 47.2
MBI09_g05203_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.1e-08 64.7 35 88.6
MBI18_g13239_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 1.1e-08 64.7 37 78.4
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 1.9e-08 63.9 61 50.8
Pp3c19_6530 Physcomitrium patens HOM05D004980 ORTHO05D006505 3.3e-08 63.2 52 53.8
SEGI_29217 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 5.6e-08 62.4 98 39.8
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 1.2e-07 61.2 52 55.8
Nn1g03793 Nelumbo nucifera HOM05D000013 ORTHO05D000011 1.6e-07 60.8 52 57.7
SMO235G0013 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 2.8e-07 60.1 61 49.2
SMO347G0194 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 2.8e-07 60.1 61 49.2
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 3.6e-07 59.7 76 44.7
Nn1g06869 Nelumbo nucifera HOM05D000013 ORTHO05D000011 6.1e-07 58.9 52 55.8
MBI18_g12615_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 8.0e-07 58.5 44 63.6
FAN14G0826 Fragaria x ananassa HOM05D000013 ORTHO05D000011 3.0e-06 56.6 47 57.4
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 3.0e-06 56.6 127 30.7
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 5.2e-06 55.8 75 48.0
Haze_08328 Corylus avellana HOM05D001092 ORTHO05D000923 5.2e-06 55.8 108 33.3
Actinidia02889 Actinidia chinensis HOM05D004980 ORTHO05D006505 6.8e-06 55.5 32 75.0
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 6.8e-06 55.5 76 42.1
Ciclev10018424m.g Citrus clementina HOM05D001092 ORTHO05D000923 6.8e-06 55.5 91 38.5
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 6.8e-06 55.5 76 43.4
RcHm_v2.0_Chr2g0160891 Rosa chinensis HOM05D000013 ORTHO05D000011 6.8e-06 55.5 38 63.2
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 6.8e-06 55.5 126 33.3
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 8.9e-06 55.1 120 33.3
CSS0011324 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 8.9e-06 55.1 74 41.9
CSS0027958 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 8.9e-06 55.1 74 41.9
Hma1.2p1_1662F.1_g296290 Hydrangea macrophylla HOM05D000013 ORTHO05D000011 8.9e-06 55.1 58 50.0
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 8.9e-06 55.1 29 82.8


User provided reference genes

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