Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 0.0e+00 3113.6 1661 100.0
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.4e-211 739.6 1692 39.2
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.2e-208 729.2 1693 39.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 5.9e-133 480.3 1782 31.1
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.1e-131 476.1 1639 32.7
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 7.4e-128 463.4 1622 32.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.7e-116 425.6 1680 30.9
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 7.7e-109 400.2 1697 30.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.6e-106 391.3 1801 29.5
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.7e-100 372.5 1860 28.2
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 5.7e-96 357.5 1723 30.6
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.8e-94 352.4 1783 28.8
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 2.4e-94 352.1 1756 28.4
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.2e-90 339.7 1879 27.4
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.9e-87 328.6 1667 27.4
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.1e-86 326.6 1604 27.2
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 6.2e-82 310.8 1685 28.2
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.1e-78 300.1 1673 28.3
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 2.0e-77 295.8 1805 27.6
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 8.6e-76 290.4 1443 26.3
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.8e-74 285.4 1666 27.0
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.2e-72 280.0 367 47.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.7e-71 276.2 1709 28.6
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.3e-71 273.9 1686 29.1
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 4.1e-70 271.6 1820 28.0
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.1e-67 263.5 677 39.0
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 9.5e-67 260.4 1658 25.8
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.2e-66 260.0 1789 26.3
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.1e-66 259.2 1651 26.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.8e-66 258.8 1992 25.7
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.7e-66 258.1 670 38.4
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 6.2e-66 257.7 1951 25.5
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.8e-65 256.1 961 32.0
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.3e-65 255.8 1586 25.3
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 5.2e-65 254.6 1674 26.3
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.2e-64 253.4 1572 27.5
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.2e-64 253.4 1732 26.8
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.0e-64 252.7 1711 26.3
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 3.4e-64 251.9 1952 25.2
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.2e-63 249.2 673 36.8
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.7e-63 248.4 828 33.2
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-62 245.4 1705 25.5
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.6e-61 241.5 626 39.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 3.0e-60 238.8 1731 26.3
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 5.1e-60 238.0 1697 26.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.6e-60 237.7 1821 24.9
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-59 236.9 828 32.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.5e-59 236.5 1971 24.6
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.5e-59 235.7 840 32.7
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 7.3e-59 234.2 854 32.1
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 7.3e-59 234.2 1632 27.0
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.3e-59 234.2 1801 26.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 3.6e-58 231.9 1857 24.9
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.4e-57 229.9 1650 25.0
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 2.4e-57 229.2 740 30.0
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.1e-57 228.8 1799 26.2
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.5e-56 226.5 1718 25.9
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.4e-56 224.9 1628 25.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 4.2e-54 218.4 670 32.1
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.3e-54 217.2 713 31.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.1e-53 216.1 1635 25.2
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.3e-52 213.4 1817 25.4
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 6.6e-52 211.1 501 35.9
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.5e-51 209.9 1745 25.7
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.6e-50 206.5 1926 27.2
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 2.4e-49 202.6 1705 24.6
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.1e-49 202.2 615 34.3
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 6.9e-49 201.1 1726 25.4
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 4.4e-48 198.4 1918 26.1
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.3e-47 196.8 542 30.8
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.9e-47 195.7 1558 25.2
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.9e-47 195.7 1750 25.3
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.4e-46 193.4 1666 24.8
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 5.4e-46 191.4 640 29.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.1e-45 189.5 429 43.4
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.5e-45 188.7 476 33.8
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 4.6e-45 188.3 1430 23.6
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.0e-45 188.0 1650 27.2
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 7.9e-45 187.6 1490 24.6
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 2.3e-44 186.0 1555 24.3
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.3e-44 186.0 1723 25.4
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.9e-44 185.3 622 34.4
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 3.3e-43 182.2 1695 23.8
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 4.3e-43 181.8 1751 25.3
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 7.4e-43 181.0 697 35.0
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.1e-41 177.2 1746 24.8
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 3.1e-41 175.6 1700 25.5
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.1e-41 175.6 1777 26.5
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 3.4e-40 172.2 1787 24.5
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.4e-40 172.2 449 33.6
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.1e-38 167.2 302 38.1
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 2.7e-37 162.5 640 28.3
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 4.6e-37 161.8 1697 25.0
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.9e-36 158.7 410 35.1
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 5.6e-35 154.8 286 41.3
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.8e-34 152.5 1723 23.7
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 2.8e-34 152.5 276 40.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.4e-33 150.2 664 35.8
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.4e-33 149.4 1749 23.4
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.0e-33 148.7 1730 23.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.1e-30 140.6 1725 24.8
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.5e-30 138.3 1750 22.3
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 9.3e-30 137.5 632 29.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.2e-29 137.1 645 34.4
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 6.0e-29 134.8 1572 22.5
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.3e-28 132.9 435 30.8
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.9e-28 132.1 674 33.2
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 6.7e-28 131.3 1535 23.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 3.3e-27 129.0 432 31.5
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 4.3e-27 128.6 430 31.2
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 9.6e-27 127.5 431 31.1
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.6e-26 126.7 451 29.9
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.1e-26 126.3 779 25.7
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.8e-25 123.2 626 35.8
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.4e-25 122.9 206 37.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 5.3e-25 121.7 432 31.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 5.3e-25 121.7 432 31.5
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.1e-19 104.0 647 34.5
ATR0712G152 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.9e-19 103.2 296 31.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.9e-19 103.2 292 29.8
MBI13_g20252_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D033708 1.9e-19 103.2 93 63.4
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 3.3e-19 102.4 511 26.8
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 3.7e-18 99.0 1527 22.6
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.9e-17 94.7 263 31.2
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.3e-15 90.5 253 33.6
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-15 89.7 252 34.1
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 6.5e-15 88.2 292 31.5
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.2e-14 84.7 344 26.5
Aqoxy4G00052 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 6.1e-13 81.6 164 38.4
CDE02G3132 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.4e-12 80.5 181 34.8
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 1.4e-12 80.5 293 31.1
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 3.9e-12 79.0 83 56.6
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 5.1e-12 78.6 1728 23.1
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.7e-12 78.2 557 24.1
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 4.3e-11 75.5 215 29.8
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 2.8e-10 72.8 249 28.1
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.8e-09 70.1 236 43.6
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 9.1e-09 67.8 196 28.6
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.2e-08 67.4 54 68.5
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 3.4e-08 65.9 119 36.1
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.9e-08 65.1 62 53.2
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.9e-07 62.8 57 63.2


User provided reference genes

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