Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI15_g00075_MAGBIO Magnolia biondii HOM05D004125 ORTHO05D004933 3.4e-73 278.5 147 100.0
Nn2g10707 Nelumbo nucifera HOM05D004125 ORTHO05D004933 1.9e-23 113.2 129 49.6
TAR623G1581 Trochodendron aralioides HOM05D004125 ORTHO05D004933 1.2e-22 110.5 143 49.0
Aqoxy4G03230 Aquilegia oxysepala HOM05D004125 ORTHO05D004933 3.9e-21 105.5 151 49.7
CiPaw.10G136300 Carya illinoinensis HOM05D004125 ORTHO05D004933 5.1e-21 105.1 128 46.1
CiPaw.10G136500 Carya illinoinensis HOM05D004125 ORTHO05D004933 5.1e-21 105.1 128 46.1
Nn2g13030 Nelumbo nucifera HOM05D004125 ORTHO05D004933 8.7e-21 104.4 129 45.0
TAR633G1040 Trochodendron aralioides HOM05D004125 ORTHO05D004933 8.7e-21 104.4 108 52.8
vmacro08723 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 1.5e-20 103.6 129 54.3
PSO339G6461 Papaver somniferum HOM05D004125 ORTHO05D004933 2.5e-20 102.8 130 46.2
Cc06_g03700 Coffea canephora HOM05D004125 ORTHO05D004933 9.7e-20 100.9 130 46.2
Manes.08G004600 Manihot esculenta HOM05D004125 ORTHO05D004933 1.3e-19 100.5 138 43.5
TAR636G1871 Trochodendron aralioides HOM05D004125 ORTHO05D004933 2.8e-19 99.4 129 46.5
CSS0018032 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 3.7e-19 99.0 129 51.9
MD12G1121900 Malus domestica HOM05D004125 ORTHO05D004933 3.7e-19 99.0 88 56.8
PSO384G3223 Papaver somniferum HOM05D004125 ORTHO05D004933 3.7e-19 99.0 130 53.8
CANSAT80G2417 Cannabis sativa HOM05D004125 ORTHO05D004933 4.8e-19 98.6 97 52.6
CSS0038970 Camellia sinensis var. sinensis HOM05D004125 ORTHO05D004933 6.3e-19 98.2 79 58.2
MD04G1102200 Malus domestica HOM05D004125 ORTHO05D004933 6.3e-19 98.2 127 45.7
Sabra06G0102300 Salix brachista HOM05D004125 ORTHO05D004933 6.3e-19 98.2 125 44.0
Lj2A109G40 Lonicera japonica HOM05D004125 ORTHO05D004933 1.1e-18 97.4 129 42.6
CiPaw.09G178600 Carya illinoinensis HOM05D004125 ORTHO05D004933 2.4e-18 96.3 108 48.1
PGR004G0966 Punica granatum HOM05D004125 ORTHO05D004933 2.4e-18 96.3 128 45.3
Rhsim04G0149200 Rhododendron simsii HOM05D004125 ORTHO05D004933 2.4e-18 96.3 109 49.5
Eucgr.A01169 Eucalyptus grandis HOM05D004125 ORTHO05D004933 3.1e-18 95.9 58 74.1
Prupe.6G240600 Prunus persica HOM05D004125 ORTHO05D004933 3.1e-18 95.9 79 57.0
Atru.chr8.1894 Acer truncatum HOM05D004125 ORTHO05D004933 9.0e-18 94.4 55 74.5
Cfa017522 Carpinus fangiana HOM05D004125 ORTHO05D004933 9.0e-18 94.4 59 71.2
Hma1.2p1_0614F.1_g189600 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 9.0e-18 94.4 136 42.6
Haze_20626 Corylus avellana HOM05D004125 ORTHO05D004933 1.2e-17 94.0 59 71.2
Manes.09G077179 Manihot esculenta HOM05D004125 ORTHO05D004933 1.2e-17 94.0 88 52.3
Potri.006G130300 Populus trichocarpa HOM05D004125 ORTHO05D004933 1.2e-17 94.0 125 42.4
CDE04G0632 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 1.5e-17 93.6 108 47.2
Dinv37266 Davidia involucrata HOM05D004125 ORTHO05D004933 1.5e-17 93.6 130 43.8
Dinv35730 Davidia involucrata HOM05D004125 ORTHO05D004933 2.0e-17 93.2 134 47.8
Thecc.05G056000 Theobroma cacao HOM05D004125 ORTHO05D004933 2.6e-17 92.8 111 45.9
BcaB06g28978 Brassica carinata HOM05D004125 ORTHO05D004933 3.4e-17 92.4 75 56.0
Ciclev10012548m.g Citrus clementina HOM05D004125 ORTHO05D004933 3.4e-17 92.4 53 75.5
Thhalv10017172m.g Eutrema salsugineum HOM05D004125 ORTHO05D004933 4.5e-17 92.0 75 56.0
HPP92_012053 Vanilla planifolia HOM05D004125 ORTHO05D004933 4.5e-17 92.0 79 55.7
Aa31LG5G22400 Aethionema arabicum HOM05D004125 ORTHO05D004933 5.9e-17 91.7 75 57.3
Duzib093G1421 Durio zibethinus HOM05D004125 ORTHO05D004933 5.9e-17 91.7 105 47.6
Duzib128G0675 Durio zibethinus HOM05D004125 ORTHO05D004933 5.9e-17 91.7 58 69.0
COL.COLO4_27059 Corchorus olitorius HOM05D004125 ORTHO05D004933 7.7e-17 91.3 58 69.0
Gorai.009G419400 Gossypium raimondii HOM05D004125 ORTHO05D004933 1.0e-16 90.9 106 48.1
Sp4g19430 Schrenkiella parvula HOM05D004125 ORTHO05D004933 1.0e-16 90.9 75 54.7
SEGI_21681 Sequoiadendron giganteum HOM05D004125 ORTHO05D004933 1.0e-16 90.9 54 70.4
THA.LOC104806497 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.0e-16 90.9 53 73.6
Duzib106G0069 Durio zibethinus HOM05D004125 ORTHO05D004933 1.3e-16 90.5 139 38.8
AT2G37110 Arabidopsis thaliana HOM05D004125 ORTHO05D004933 1.7e-16 90.1 75 54.7
Gohir.A04G075700 Gossypium hirsutum HOM05D004125 ORTHO05D004933 1.7e-16 90.1 58 69.0
Carub.0004s1900 Capsella rubella HOM05D004125 ORTHO05D004933 2.2e-16 89.7 75 54.7
CARHR131620 Cardamine hirsuta HOM05D004125 ORTHO05D004933 2.2e-16 89.7 76 56.6
CDE07G0936 Ceratophyllum demersum HOM05D004125 ORTHO05D004933 3.8e-16 89.0 53 69.8
Gohir.A01G216300 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.8e-16 89.0 79 53.2
Gohir.D01G205100 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.8e-16 89.0 79 53.2
Gohir.D04G114800 Gossypium hirsutum HOM05D004125 ORTHO05D004933 3.8e-16 89.0 106 47.2
Gorai.002G249400 Gossypium raimondii HOM05D004125 ORTHO05D004933 3.8e-16 89.0 79 53.2
Sabra16G0093400 Salix brachista HOM05D004125 ORTHO05D004933 3.8e-16 89.0 126 43.7
TWI53G0971 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 3.8e-16 89.0 54 72.2
Oeu059982.1 Olea europaea HOM05D004125 ORTHO05D004933 5.0e-16 88.6 109 48.6
BolC4t28068H Brassica oleracea HOM05D004125 ORTHO05D004933 6.5e-16 88.2 75 53.3
BraA04t18316Z Brassica rapa HOM05D004125 ORTHO05D004933 6.5e-16 88.2 75 53.3
A04p28380 Brassica napus HOM05D004125 ORTHO05D004933 8.5e-16 87.8 75 53.3
C04p65690 Brassica napus HOM05D004125 ORTHO05D004933 8.5e-16 87.8 75 53.3
THA.LOC104823453 Tarenaya hassleriana HOM05D004125 ORTHO05D004933 1.1e-15 87.4 53 69.8
Atru.chr12.53 Acer truncatum HOM05D004125 ORTHO05D004933 1.4e-15 87.0 57 70.2
AL4G33460 Arabidopsis lyrata HOM05D004125 ORTHO05D004933 1.4e-15 87.0 75 53.3
arahy.Tifrunner.gnm1.ann1.DS9KFU Arachis hypogaea HOM05D004125 ORTHO05D004933 1.4e-15 87.0 56 67.9
arahy.Tifrunner.gnm1.ann1.SDZN59 Arachis hypogaea HOM05D004125 ORTHO05D004933 1.4e-15 87.0 56 67.9
RcHm_v2.0_Chr3g0469051 Rosa chinensis HOM05D004125 ORTHO05D004933 1.9e-15 86.7 105 46.7
vmacro20050 Vaccinium macrocarpon HOM05D004125 ORTHO05D004933 1.9e-15 86.7 55 65.5
VMungo1383G2095 Vigna mungo HOM05D004125 ORTHO05D004933 1.9e-15 86.7 55 67.3
BcaB01g03789 Brassica carinata HOM05D004125 ORTHO05D004933 3.2e-15 85.9 75 52.0
A03p20450 Brassica napus HOM05D004125 ORTHO05D004933 3.2e-15 85.9 75 52.0
BraA03t11288Z Brassica rapa HOM05D004125 ORTHO05D004933 3.2e-15 85.9 75 52.0
TWI74G1587 Tripterygium wilfordii HOM05D004125 ORTHO05D004933 3.2e-15 85.9 54 70.4
BcaC02g07548 Brassica carinata HOM05D004125 ORTHO05D004933 4.2e-15 85.5 75 52.0
FAN02G0333 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.2e-15 85.5 105 45.7
FAN05G0570 Fragaria x ananassa HOM05D004125 ORTHO05D004933 4.2e-15 85.5 105 45.7
BcaC01g05633 Brassica carinata HOM05D004125 ORTHO05D004933 5.5e-15 85.1 75 52.0
C03p24050 Brassica napus HOM05D004125 ORTHO05D004933 5.5e-15 85.1 75 52.0
BolC3t14795H Brassica oleracea HOM05D004125 ORTHO05D004933 5.5e-15 85.1 75 52.0
Duzib093G1540 Durio zibethinus HOM05D004125 ORTHO05D004933 7.2e-15 84.7 54 68.5
Potri.016G087200 Populus trichocarpa HOM05D004125 ORTHO05D004933 7.2e-15 84.7 75 54.7
QL04p031281 Quercus lobata HOM05D004125 ORTHO05D004933 7.2e-15 84.7 134 45.5
QL07p045037 Quercus lobata HOM05D004125 ORTHO05D004933 7.2e-15 84.7 134 45.5
ClCG04G008880 Citrullus lanatus HOM05D004125 ORTHO05D004933 9.4e-15 84.3 109 47.7
MELO3C014254.2 Cucumis melo HOM05D004125 ORTHO05D004933 9.4e-15 84.3 86 47.7
Glyma.19G179500 Glycine max HOM05D004125 ORTHO05D004933 9.4e-15 84.3 55 65.5
HanXRQChr13g0399591 Helianthus annuus HOM05D004125 ORTHO05D004933 9.4e-15 84.3 111 46.8
Lj3C980T5 Lonicera japonica HOM05D004125 ORTHO05D004933 9.4e-15 84.3 109 43.1
TPR.G18284 Trifolium pratense HOM05D004125 ORTHO05D004933 9.4e-15 84.3 54 64.8
Oeu001336.1 Olea europaea HOM05D004125 ORTHO05D004933 1.2e-14 84.0 154 41.6
Phvul.001G175500 Phaseolus vulgaris HOM05D004125 ORTHO05D004933 1.2e-14 84.0 55 65.5
Actinidia13097 Actinidia chinensis HOM05D004125 ORTHO05D004933 1.6e-14 83.6 72 55.6
Lsat_1_v5_gn_6_30280 Lactuca sativa HOM05D004125 ORTHO05D004933 1.6e-14 83.6 62 62.9
Medtr7g100870 Medicago truncatula HOM05D004125 ORTHO05D004933 2.1e-14 83.2 55 63.6
Lj1g0007543 Lotus japonicus HOM05D004125 ORTHO05D004933 2.7e-14 82.8 55 63.6
Sed0009991 Sechium edule HOM05D004125 ORTHO05D004933 2.7e-14 82.8 127 39.4
DCAR_017716 Daucus carota HOM05D004125 ORTHO05D004933 3.6e-14 82.4 76 55.3
FvH4_6g15540 Fragaria vesca HOM05D004125 ORTHO05D004933 3.6e-14 82.4 105 44.8
FAN09G3242 Fragaria x ananassa HOM05D004125 ORTHO05D004933 3.6e-14 82.4 105 44.8
Glyma.03G178800 Glycine max HOM05D004125 ORTHO05D004933 4.6e-14 82.0 55 63.6
PGR142G2082 Punica granatum HOM05D004125 ORTHO05D004933 4.6e-14 82.0 133 39.8
Sed0002474 Sechium edule HOM05D004125 ORTHO05D004933 4.6e-14 82.0 85 50.6
Ca_08833_v3 Cicer arietinum L. HOM05D004125 ORTHO05D004933 6.1e-14 81.6 75 50.7
FAN14G3382 Fragaria x ananassa HOM05D004125 ORTHO05D004933 6.1e-14 81.6 106 46.2
Gorai.007G374200 Gossypium raimondii HOM05D004125 ORTHO05D004933 7.9e-14 81.3 82 51.2
PSO063G5409 Papaver somniferum HOM05D004125 ORTHO05D004933 7.9e-14 81.3 108 43.5
RhsimUnG0115400 Rhododendron simsii HOM05D004125 ORTHO05D004933 1.0e-13 80.9 79 50.6
Nitab4.5_0008568g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 2.3e-13 79.7 78 46.2
Oeu014972.1 Olea europaea HOM05D004125 ORTHO05D004933 3.0e-13 79.3 109 56.0
CsaV3_6G039390 Cucumis sativus L. HOM05D004125 ORTHO05D004933 3.9e-13 79.0 53 64.2
Nitab4.5_0003871g0020 Nicotiana tabacum HOM05D004125 ORTHO05D004933 3.9e-13 79.0 78 46.2
Nitab4.5_0006156g0040 Nicotiana tabacum HOM05D004125 ORTHO05D004933 8.8e-13 77.8 112 42.0
PGSC0003DMG400001744 Solanum tuberosum HOM05D004125 ORTHO05D004933 8.8e-13 77.8 78 47.4
Sopen09g002360 Solanum pennellii HOM05D004125 ORTHO05D004933 1.1e-12 77.4 78 47.4
MSTRG.5726 Avicennia marina HOM05D004125 ORTHO05D004933 2.0e-12 76.6 131 42.0
Gohir.A11G324600 Gossypium hirsutum HOM05D004125 ORTHO05D004933 2.5e-12 76.3 80 50.0
Solyc09g007490.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 3.3e-12 75.9 77 44.2
Migut.J00424 Erythranthe guttata HOM05D004125 ORTHO05D004933 4.3e-12 75.5 109 43.1
PGSC0003DMG400010481 Solanum tuberosum HOM05D004125 ORTHO05D004933 4.3e-12 75.5 133 33.1
SGA_v2.0_scaffold126G33910 Striga asiatica HOM05D004125 ORTHO05D004933 4.3e-12 75.5 109 41.3
ECA233G4685 Erigeron canadensis HOM05D004125 ORTHO05D004933 5.7e-12 75.1 54 63.0
Nitab4.5_0000669g0120 Nicotiana tabacum HOM05D004125 ORTHO05D004933 5.7e-12 75.1 112 41.1
MSTRG.19144 Avicennia marina HOM05D004125 ORTHO05D004933 7.4e-12 74.7 111 42.3
SalBow3G3732 Salvia bowleyana HOM05D004125 ORTHO05D004933 7.4e-12 74.7 108 39.8
Solyc10g084260.3 Solanum lycopersicum HOM05D004125 ORTHO05D004933 2.2e-11 73.2 133 33.1
Cfa017523 Carpinus fangiana HOM05D004125 ORTHO05D004933 2.8e-11 72.8 64 59.4
Lalb_Chr20g0112841 Lupinus albus HOM05D004125 ORTHO05D004933 6.3e-11 71.6 57 56.1
Sopen10g033700 Solanum pennellii HOM05D004125 ORTHO05D004933 8.2e-11 71.2 133 33.1
CAN.G915.16 Capsicum annuum HOM05D004125 ORTHO05D004933 1.8e-10 70.1 81 42.0
Peaxi162Scf00005g03811 Petunia axillaris HOM05D004125 ORTHO05D004933 1.8e-10 70.1 101 44.6
Peaxi162Scf00472g00039 Petunia axillaris HOM05D004125 ORTHO05D004933 1.8e-10 70.1 130 36.9
Ah.15g092190 Amaranthus hybridus HOM05D004125 ORTHO05D004933 1.5e-09 67.0 114 39.5
Migut.L01669 Erythranthe guttata HOM05D004125 ORTHO05D004933 2.6e-09 66.2 92 40.2
QL07p045063 Quercus lobata HOM05D004125 ORTHO05D004933 2.6e-09 66.2 99 41.4
CAN.G1091.11 Capsicum annuum HOM05D004125 ORTHO05D004933 3.4e-09 65.9 77 42.9
Sc07g0006290 Simmondsia chinensis HOM05D004125 ORTHO05D004933 1.0e-08 64.3 53 56.6
EL10Ac7g16513 Beta vulgaris HOM05D004125 ORTHO05D004933 8.5e-08 61.2 55 56.4
AUR62040494 Chenopodium quinoa HOM05D004125 ORTHO05D004933 1.4e-07 60.5 55 52.7
Hma1.2p1_0111F.1_g054010 Hydrangea macrophylla HOM05D004125 ORTHO05D004933 1.4e-07 60.5 38 73.7
Os01g0157900 Oryza sativa ssp. japonica HOM05D004125 ORTHO05D004933 7.2e-07 58.2 52 51.9
SGA_v2.0_scaffold94G28676 Striga asiatica HOM05D004125 ORTHO05D004933 1.2e-06 57.4 94 36.2
SalBow5G1492 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.6e-06 57.0 54 51.9
SalBow5G2572 Salvia bowleyana HOM05D004125 ORTHO05D004933 1.6e-06 57.0 54 51.9
Zm00001eb123690 Zea mays HOM05D004125 ORTHO05D004933 1.6e-06 57.0 59 47.5
unitig_0.g689 Utricularia gibba HOM05D004125 ORTHO05D004933 2.1e-06 56.6 56 42.9
SalBow5G0726 Salvia bowleyana HOM05D004125 ORTHO05D004933 3.6e-06 55.8 54 50.0
DCAR_014971 Daucus carota HOM05D004125 ORTHO05D004933 6.1e-06 55.1 56 51.8


User provided reference genes

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