Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g45810_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 1.3e-102 376.3 188 100.0
MBI14_g25115_MAGBIO Magnolia biondii HOM05D005668 ORTHO05D007082 4.0e-78 295.0 154 96.1
Nn2g13550 Nelumbo nucifera HOM05D005668 ORTHO05D007082 1.2e-58 230.3 151 72.2
CDE04G3656 Ceratophyllum demersum HOM05D005668 ORTHO05D007082 6.6e-57 224.6 151 70.2
GSVIVG01034046001 Vitis vinifera HOM05D005668 ORTHO05D007082 8.6e-57 224.2 151 72.2
Actinidia13809 Actinidia chinensis HOM05D005668 ORTHO05D007082 1.9e-56 223.0 150 72.0
Os01g0753200 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 4.3e-56 221.9 150 68.7
TAR633G1417 Trochodendron aralioides HOM05D005668 ORTHO05D007082 5.6e-56 221.5 150 72.0
Actinidia29156 Actinidia chinensis HOM05D005668 ORTHO05D007082 2.1e-55 219.5 153 69.3
Os02g0788500 Oryza sativa ssp. japonica HOM05D005668 ORTHO05D007082 6.1e-55 218.0 146 68.5
Thecc.05G026500 Theobroma cacao HOM05D005668 ORTHO05D007082 8.0e-55 217.6 150 69.3
CSS0033766 Camellia sinensis var. sinensis HOM05D005668 ORTHO05D007082 1.0e-54 217.2 157 68.8
Lj3P959T33 Lonicera japonica HOM05D005668 ORTHO05D007082 1.4e-54 216.9 154 67.5
Cc06_g01940 Coffea canephora HOM05D005668 ORTHO05D007082 4.4e-53 211.8 151 66.2
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 7.5e-53 211.1 150 66.0
Hma1.2p1_0671F.1_g200690 Hydrangea macrophylla HOM05D005668 ORTHO05D007082 7.5e-53 211.1 151 66.2
COL.COLO4_14664 Corchorus olitorius HOM05D005668 ORTHO05D007082 9.8e-53 210.7 152 66.4
PSO384G2457 Papaver somniferum HOM05D005668 ORTHO05D007082 1.3e-52 210.3 151 66.9
MSTRG.5615 Avicennia marina HOM05D005668 ORTHO05D007082 2.2e-52 209.5 155 65.8
Manes.09G099500 Manihot esculenta HOM05D005668 ORTHO05D007082 2.9e-52 209.1 152 67.1
Nitab4.5_0000119g0350 Nicotiana tabacum HOM05D005668 ORTHO05D007082 3.7e-52 208.8 151 64.9
PSO339G5656 Papaver somniferum HOM05D005668 ORTHO05D007082 3.7e-52 208.8 151 65.6
Aqoxy5G03828 Aquilegia oxysepala HOM05D005668 ORTHO05D007082 4.9e-52 208.4 151 66.2
Duzib093G0236 Durio zibethinus HOM05D005668 ORTHO05D007082 4.9e-52 208.4 157 65.6
Potri.016G105600 Populus trichocarpa HOM05D005668 ORTHO05D007082 6.4e-52 208.0 170 62.4
Gohir.A09G162000 Gossypium hirsutum HOM05D005668 ORTHO05D007082 1.1e-51 207.2 151 66.9
ECA247G1252 Erigeron canadensis HOM05D005668 ORTHO05D007082 1.8e-51 206.5 150 64.7
Hund26016 Selenicereus undatus HOM05D005668 ORTHO05D007082 1.8e-51 206.5 147 65.3
Migut.J00254 Erythranthe guttata HOM05D005668 ORTHO05D007082 2.4e-51 206.1 155 65.2
CAN.G351.19 Capsicum annuum HOM05D005668 ORTHO05D007082 3.2e-51 205.7 151 63.6
Gohir.D09G157600 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.2e-51 205.7 151 66.2
Gorai.006G179300 Gossypium raimondii HOM05D005668 ORTHO05D007082 3.2e-51 205.7 151 66.2
PGSC0003DMG400019135 Solanum tuberosum HOM05D005668 ORTHO05D007082 3.2e-51 205.7 151 63.6
PGSC0003DMG400020340 Solanum tuberosum HOM05D005668 ORTHO05D007082 1.2e-50 203.8 151 62.3
HanXRQChr10g0292601 Helianthus annuus HOM05D005668 ORTHO05D007082 2.0e-50 203.0 151 62.9
CAN.G978.9 Capsicum annuum HOM05D005668 ORTHO05D007082 2.7e-50 202.6 151 62.9
TWI77G0370 Tripterygium wilfordii HOM05D005668 ORTHO05D007082 2.7e-50 202.6 152 65.1
Solyc09g011730.4 Solanum lycopersicum HOM05D005668 ORTHO05D007082 3.5e-50 202.2 151 62.3
Sopen09g006550 Solanum pennellii HOM05D005668 ORTHO05D007082 3.5e-50 202.2 151 62.3
Potri.006G093700 Populus trichocarpa HOM05D005668 ORTHO05D007082 5.9e-50 201.4 152 63.8
SGA_v2.0_scaffold75G24983 Striga asiatica HOM05D005668 ORTHO05D007082 1.0e-49 200.7 149 64.4
ATR0950G003 Amborella trichopoda HOM05D005668 ORTHO05D007082 1.3e-49 200.3 151 62.3
Peaxi162Scf00014g01419 Petunia axillaris HOM05D005668 ORTHO05D007082 1.3e-49 200.3 151 61.6
Cpa.g.sc56.75 Carica papaya HOM05D005668 ORTHO05D007082 1.7e-49 199.9 145 66.9
Rhsim05G0201000 Rhododendron simsii HOM05D005668 ORTHO05D007082 3.9e-49 198.7 148 64.2
Sabra06G0071200 Salix brachista HOM05D005668 ORTHO05D007082 3.9e-49 198.7 152 62.5
CANSAT35G1374 Cannabis sativa HOM05D005668 ORTHO05D007082 5.0e-49 198.4 150 66.7
HanXRQChr06g0176661 Helianthus annuus HOM05D005668 ORTHO05D007082 6.6e-49 198.0 150 62.7
Haze_20910 Corylus avellana HOM05D005668 ORTHO05D007082 8.6e-49 197.6 154 65.6
EL10Ac7g17156 Beta vulgaris HOM05D005668 ORTHO05D007082 1.1e-48 197.2 158 60.1
CiPaw.10G150900 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.9e-48 196.4 150 64.7
HPP92_006850 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.9e-48 196.4 155 60.6
HPP92_006867 Vanilla planifolia HOM05D005668 ORTHO05D007082 1.9e-48 196.4 155 60.6
AUR62034588 Chenopodium quinoa HOM05D005668 ORTHO05D007082 3.3e-48 195.7 141 64.5
Ciclev10012485m.g Citrus clementina HOM05D005668 ORTHO05D007082 3.3e-48 195.7 151 62.9
Atru.chr8.2154 Acer truncatum HOM05D005668 ORTHO05D007082 4.3e-48 195.3 143 64.3
QL07p027771 Quercus lobata HOM05D005668 ORTHO05D007082 9.5e-48 194.1 150 64.0
PGR044G0692 Punica granatum HOM05D005668 ORTHO05D007082 1.6e-47 193.4 152 59.2
AUR62036679 Chenopodium quinoa HOM05D005668 ORTHO05D007082 2.1e-47 193.0 141 63.8
Lsat_1_v5_gn_9_29260 Lactuca sativa HOM05D005668 ORTHO05D007082 2.1e-47 193.0 150 60.7
Eucgr.F01481 Eucalyptus grandis HOM05D005668 ORTHO05D007082 3.6e-47 192.2 153 60.8
DCAR_024047 Daucus carota HOM05D005668 ORTHO05D007082 8.0e-47 191.0 133 67.7
unitig_27.g24805 Utricularia gibba HOM05D005668 ORTHO05D007082 1.4e-46 190.3 145 62.1
Sc01g0004980 Simmondsia chinensis HOM05D005668 ORTHO05D007082 6.8e-46 188.0 145 62.8
Lalb_Chr07g0193171 Lupinus albus HOM05D005668 ORTHO05D007082 1.5e-45 186.8 150 60.0
Gohir.A10G232501 Gossypium hirsutum HOM05D005668 ORTHO05D007082 2.6e-45 186.0 146 61.0
Gohir.D10G244900 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.4e-45 185.7 146 61.0
Gorai.011G282300 Gossypium raimondii HOM05D005668 ORTHO05D007082 3.4e-45 185.7 146 61.0
ClCG10G021640 Citrullus lanatus HOM05D005668 ORTHO05D007082 4.4e-45 185.3 139 64.0
arahy.Tifrunner.gnm1.ann1.J12K19 Arachis hypogaea HOM05D005668 ORTHO05D007082 7.5e-45 184.5 150 60.7
SEGI_35617 Sequoiadendron giganteum HOM05D005668 ORTHO05D007082 9.8e-45 184.1 144 57.6
Manes.07G057000 Manihot esculenta HOM05D005668 ORTHO05D007082 1.3e-44 183.7 147 63.3
CiPaw.09G203400 Carya illinoinensis HOM05D005668 ORTHO05D007082 1.7e-44 183.3 150 60.7
Sed0009323 Sechium edule HOM05D005668 ORTHO05D007082 1.7e-44 183.3 139 62.6
Glyma.03G073762 Glycine max HOM05D005668 ORTHO05D007082 2.9e-44 182.6 151 59.6
arahy.Tifrunner.gnm1.ann1.WQ4JXZ Arachis hypogaea HOM05D005668 ORTHO05D007082 3.7e-44 182.2 150 60.0
Thhalv10021409m.g Eutrema salsugineum HOM05D005668 ORTHO05D007082 3.7e-44 182.2 145 60.7
CsaV3_3G034370 Cucumis sativus L. HOM05D005668 ORTHO05D007082 6.4e-44 181.4 139 62.6
AT3G09250 Arabidopsis thaliana HOM05D005668 ORTHO05D007082 8.3e-44 181.0 145 59.3
BolC1t05468H Brassica oleracea HOM05D005668 ORTHO05D007082 1.4e-43 180.3 145 60.0
Zm00001eb257420 Zea mays HOM05D005668 ORTHO05D007082 1.4e-43 180.3 149 59.1
Glyma.01G107100 Glycine max HOM05D005668 ORTHO05D007082 1.9e-43 179.9 151 58.3
VMungo0540G0241 Vigna mungo HOM05D005668 ORTHO05D007082 1.9e-43 179.9 151 56.3
MELO3C009208.2 Cucumis melo HOM05D005668 ORTHO05D007082 2.4e-43 179.5 139 61.9
THA.LOC104823270 Tarenaya hassleriana HOM05D005668 ORTHO05D007082 3.2e-43 179.1 145 58.6
Sp3g07630 Schrenkiella parvula HOM05D005668 ORTHO05D007082 4.1e-43 178.7 145 59.3
BraA01t04309Z Brassica rapa HOM05D005668 ORTHO05D007082 5.4e-43 178.3 145 60.7
BcaC09g48059 Brassica carinata HOM05D005668 ORTHO05D007082 7.0e-43 177.9 145 60.7
AL3G20360 Arabidopsis lyrata HOM05D005668 ORTHO05D007082 9.2e-43 177.6 145 57.9
CARHR083600 Cardamine hirsuta HOM05D005668 ORTHO05D007082 9.2e-43 177.6 145 58.6
Carub.0003s0836 Capsella rubella HOM05D005668 ORTHO05D007082 2.0e-42 176.4 145 57.9
BcaC09g48013 Brassica carinata HOM05D005668 ORTHO05D007082 2.7e-42 176.0 145 59.3
Medtr4g019910 Medicago truncatula HOM05D005668 ORTHO05D007082 2.7e-42 176.0 149 57.0
Gohir.A10G229920 Gossypium hirsutum HOM05D005668 ORTHO05D007082 3.5e-42 175.6 146 58.2
Ca_07382_v3 Cicer arietinum L. HOM05D005668 ORTHO05D007082 4.6e-42 175.3 150 56.0
Prupe.6G267200 Prunus persica HOM05D005668 ORTHO05D007082 6.0e-42 174.9 149 58.4
SHI12750 Sapria himalayana HOM05D005668 ORTHO05D007082 1.3e-41 173.7 152 55.9
MD12G1156400 Malus domestica HOM05D005668 ORTHO05D007082 1.7e-41 173.3 150 60.0
FvH4_6g12490 Fragaria vesca HOM05D005668 ORTHO05D007082 3.0e-41 172.6 151 57.6
FAN14G5852 Fragaria x ananassa HOM05D005668 ORTHO05D007082 3.0e-41 172.6 151 57.6
Lj3g0016116 Lotus japonicus HOM05D005668 ORTHO05D007082 6.6e-41 171.4 148 58.1
Aa31LG3G1740 Aethionema arabicum HOM05D005668 ORTHO05D007082 1.5e-40 170.2 143 56.6
FAN02G1041 Fragaria x ananassa HOM05D005668 ORTHO05D007082 1.5e-40 170.2 148 57.4
Phvul.006G070400 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 3.3e-40 169.1 151 53.6
FAN05G5175 Fragaria x ananassa HOM05D005668 ORTHO05D007082 4.3e-40 168.7 148 56.8
FAN09G2081 Fragaria x ananassa HOM05D005668 ORTHO05D007082 4.3e-40 168.7 148 56.8
MD04G1141800 Malus domestica HOM05D005668 ORTHO05D007082 5.6e-40 168.3 143 57.3
RcHm_v2.0_Chr3g0464311 Rosa chinensis HOM05D005668 ORTHO05D007082 5.6e-40 168.3 148 56.1
Psat7g240360 Pisum sativum HOM05D005668 ORTHO05D007082 1.6e-39 166.8 159 54.1
Dinv37103 Davidia involucrata HOM05D005668 ORTHO05D007082 8.1e-39 164.5 151 56.3
SMO143G0113 Selaginella moellendorffii HOM05D005668 ORTHO05D007082 2.0e-37 159.8 126 57.9
Nitab4.5_0000008g0300 Nicotiana tabacum HOM05D005668 ORTHO05D007082 1.4e-35 153.7 114 59.6
Phvul.006G070500 Phaseolus vulgaris HOM05D005668 ORTHO05D007082 9.2e-35 151.0 151 49.7
BcaC01g04218 Brassica carinata HOM05D005668 ORTHO05D007082 1.0e-33 147.5 130 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2951 Anthoceros agrestis HOM05D005668 ORTHO05D007082 1.1e-27 127.5 132 46.2
Psat3g035960 Pisum sativum HOM05D005668 ORTHO05D007082 1.1e-27 127.5 109 57.8
Dinv35535 Davidia involucrata HOM05D005668 ORTHO05D007082 2.7e-26 122.9 92 68.5
TPR.G2978 Trifolium pratense HOM05D005668 ORTHO05D007082 3.1e-22 109.4 83 62.7
vmacro20204 Vaccinium macrocarpon HOM05D005668 ORTHO05D007082 3.1e-22 109.4 75 64.0
Oeu039148.1 Olea europaea HOM05D005668 ORTHO05D007082 1.5e-21 107.1 75 62.7
Nitab4.5_0002152g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 5.8e-21 105.1 98 56.1
arahy.Tifrunner.gnm1.ann1.2N10NB Arachis hypogaea HOM05D005668 ORTHO05D007082 2.1e-18 96.7 103 52.4
BcaB04g18542 Brassica carinata HOM05D005668 ORTHO05D007082 1.5e-16 90.5 70 57.1
C03p43750 Brassica napus HOM05D005668 ORTHO05D007082 4.3e-16 89.0 70 57.1
BraA03t12781Z Brassica rapa HOM05D005668 ORTHO05D007082 5.6e-16 88.6 76 57.9
A03p36100 Brassica napus HOM05D005668 ORTHO05D007082 1.3e-15 87.4 105 48.6
Cre08.g375950 Chlamydomonas reinhardtii HOM05D005668 ORTHO05D007082 2.1e-15 86.7 120 36.7
Atru.chr10.1066 Acer truncatum HOM05D005668 ORTHO05D007082 3.4e-13 79.3 72 59.7
Mapoly0024s0042 Marchantia polymorpha HOM05D005144 ORTHO05D006112 5.8e-13 78.6 96 39.6
SMO356G0181 Selaginella moellendorffii HOM05D005144 ORTHO05D006112 1.1e-11 74.3 101 36.6
AagrBONN_evm.TU.Sc2ySwM_362.2655 Anthoceros agrestis HOM05D005144 ORTHO05D006112 2.1e-10 70.1 98 37.8
Nitab4.5_0010516g0020 Nicotiana tabacum HOM05D005668 ORTHO05D007082 2.3e-09 66.6 49 55.1
TPR.G339 Trifolium pratense HOM05D005668 ORTHO05D007082 3.9e-09 65.9 98 40.8
TWI60G1459 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 4.8e-07 58.9 82 35.4
SEGI_22496 Sequoiadendron giganteum HOM05D005144 ORTHO05D006112 6.2e-07 58.5 82 34.1
TWI15G0686 Tripterygium wilfordii HOM05D005144 ORTHO05D006112 1.4e-06 57.4 82 34.1
MCO04G552 Micromonas commoda HOM05D005668 ORTHO05D007082 2.4e-06 56.6 71 38.0
Phvul.002G299800 Phaseolus vulgaris HOM05D005144 ORTHO05D006112 4.0e-06 55.8 82 31.7
Nitab4.5_0000798g0100 Nicotiana tabacum HOM05D005144 ORTHO05D006112 5.3e-06 55.5 82 31.7
Nitab4.5_0008496g0030 Nicotiana tabacum HOM05D005144 ORTHO05D006112 5.3e-06 55.5 82 31.7
Os01g0550200 Oryza sativa ssp. japonica HOM05D005144 ORTHO05D006112 5.3e-06 55.5 83 33.7
CAN.G567.13 Capsicum annuum HOM05D005144 ORTHO05D006112 6.9e-06 55.1 82 30.5
Ca_17470_v3 Cicer arietinum L. HOM05D005144 ORTHO05D006112 9.0e-06 54.7 89 30.3
Lalb_Chr09g0332261 Lupinus albus HOM05D005144 ORTHO05D006112 9.0e-06 54.7 82 30.5
Zm00001eb162420 Zea mays HOM05D005144 ORTHO05D006112 9.0e-06 54.7 85 31.8


User provided reference genes

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