Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.1e-163 578.9 289 100.0
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.2e-120 436.0 216 98.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.5e-76 290.4 278 55.4
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 3.1e-66 256.1 273 50.9
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 7.7e-65 251.5 274 49.3
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.0e-64 251.1 276 49.6
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.0e-64 251.1 271 50.2
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.8e-64 249.2 287 48.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 4.2e-63 245.7 274 50.7
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 7.2e-63 245.0 272 48.9
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 7.2e-63 245.0 275 48.4
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 9.4e-63 244.6 269 49.8
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.2e-62 244.2 291 48.1
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 1.2e-62 244.2 272 48.5
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 6.8e-61 238.4 271 46.1
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 4.4e-60 235.7 279 45.2
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 9.7e-60 234.6 272 45.2
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.4e-58 230.7 272 45.2
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 2.4e-58 229.9 279 44.1
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 3.1e-58 229.6 272 48.5
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 7.0e-58 228.4 261 49.4
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.6e-57 227.3 261 49.0
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 5.9e-57 225.3 273 45.8
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 5.0e-56 222.2 273 43.6
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 6.5e-56 221.9 288 43.4
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 8.5e-56 221.5 288 43.4
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.1e-55 221.1 228 50.9
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.2e-54 217.6 278 44.6
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.2e-54 217.6 269 46.5
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 1.6e-54 217.2 269 47.6
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 3.6e-54 216.1 269 42.0
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.4e-53 214.2 270 43.7
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.8e-53 213.8 269 43.9
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.0e-53 212.6 273 45.4
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 4.0e-53 212.6 273 45.4
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 5.2e-53 212.2 269 43.9
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 5.2e-53 212.2 272 44.9
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.0e-52 210.3 269 43.9
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 4.4e-52 209.1 269 43.1
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 4.4e-52 209.1 272 43.0
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 9.8e-52 208.0 270 41.5
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.7e-51 207.2 270 43.0
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 2.2e-51 206.8 269 43.5
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 2.4e-50 203.4 252 43.7
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 3.1e-50 203.0 267 42.3
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.2e-49 201.1 278 45.3
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 2.0e-49 200.3 273 42.1
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 4.5e-49 199.1 276 44.6
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 5.9e-49 198.7 225 46.2
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 7.7e-49 198.4 270 41.1
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 7.7e-49 198.4 272 41.2
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.0e-48 198.0 273 43.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.0e-48 198.0 259 42.9
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 5.0e-48 195.7 280 44.3
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 1.1e-47 194.5 277 41.2
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 1.5e-47 194.1 266 40.6
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 1.5e-47 194.1 270 40.7
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.5e-47 194.1 276 37.0
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 1.9e-47 193.7 276 38.0
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 1.2e-46 191.0 288 38.5
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.6e-46 190.7 267 39.0
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 2.1e-46 190.3 215 45.1
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.8e-46 189.9 267 40.1
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 3.6e-46 189.5 274 39.1
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 6.1e-46 188.7 269 40.1
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 6.1e-46 188.7 264 40.9
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 1.4e-45 187.6 288 37.5
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 4.0e-45 186.0 264 39.8
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 6.8e-45 185.3 274 40.1
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 8.9e-45 184.9 271 37.3
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 1.2e-44 184.5 309 38.2
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.2e-44 184.5 309 39.5
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 2.0e-44 183.7 271 36.9
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 2.0e-44 183.7 271 36.9
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.4e-44 183.0 273 40.7
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 4.4e-44 182.6 279 40.5
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 5.7e-44 182.2 271 36.9
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 7.5e-44 181.8 275 38.2
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 9.8e-44 181.4 236 41.9
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.7e-43 180.6 263 37.3
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 3.7e-43 179.5 275 39.3
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.1e-42 177.9 272 40.8
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 1.4e-42 177.6 285 36.1
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 7.0e-42 175.3 353 32.6
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 2.7e-41 173.3 207 44.4
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 3.5e-41 172.9 270 37.8
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 3.5e-41 172.9 272 36.8
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 7.8e-41 171.8 263 38.4
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.0e-40 171.4 265 38.5
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.7e-40 170.6 270 36.3
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 3.9e-40 169.5 269 37.2
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 3.9e-40 169.5 270 36.3
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.5e-39 166.8 208 45.2
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.5e-39 166.8 274 36.1
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 4.7e-38 162.5 292 33.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.2e-36 157.9 267 34.1
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 3.4e-36 156.4 269 36.4
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 9.8e-36 154.8 267 34.8
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.7e-35 154.1 304 33.6
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 4.9e-35 152.5 266 34.6
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 1.4e-34 151.0 214 40.2
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 5.4e-34 149.1 309 31.4
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 1.6e-33 147.5 174 44.3
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 1.7e-32 144.1 155 52.3
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.0e-32 143.3 301 31.2
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 8.6e-32 141.7 263 31.6
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 4.3e-31 139.4 269 32.7
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.4e-29 134.4 165 43.6
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 2.9e-27 126.7 181 38.1
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.9e-26 124.0 144 43.8
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 4.1e-26 122.9 135 52.6
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 6.6e-24 115.5 122 48.4
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.9e-21 105.1 167 35.3
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.3e-19 101.3 124 48.4
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 2.1e-17 94.0 120 39.2
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 2.0e-12 77.4 147 29.9
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.3e-11 74.7 103 40.8
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 2.9e-11 73.6 87 46.0
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 5.4e-10 69.3 91 47.3
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 8.7e-08 62.0 75 42.7
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 8.1e-06 55.5 68 41.2


User provided reference genes

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