Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 0.0e+00 1116.7 596 100.0
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 4.0e-241 838.2 557 81.1
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 5.2e-241 837.8 545 81.8
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 3.7e-239 831.6 543 84.3
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 1.0e-236 823.5 542 81.9
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 8.6e-236 820.5 552 81.2
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 1.2e-232 810.1 542 81.0
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 1.3e-231 806.6 538 81.0
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 4.9e-231 804.7 549 79.1
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 8.3e-231 803.9 538 80.7
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 7.0e-230 800.8 538 78.8
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 7.8e-229 797.3 562 78.5
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 3.0e-228 795.4 544 79.2
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 3.9e-228 795.0 536 77.8
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 1.1e-227 793.5 540 79.8
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 1.2e-226 790.0 544 76.7
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 1.1e-225 786.9 552 75.9
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 1.5e-224 783.1 534 79.4
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 2.6e-224 782.3 549 77.8
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 2.4e-222 775.8 547 77.9
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.2e-221 773.5 543 79.2
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 2.1e-221 772.7 544 78.1
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 4.6e-221 771.5 544 76.1
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 7.8e-221 770.8 539 78.3
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 1.7e-220 769.6 558 74.7
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 3.9e-220 768.5 538 78.4
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 5.1e-220 768.1 537 76.7
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 8.6e-220 767.3 564 73.4
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 2.5e-219 765.8 553 76.5
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 3.3e-219 765.4 546 77.7
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 7.3e-219 764.2 539 78.8
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 9.5e-219 763.8 547 77.0
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 1.2e-218 763.5 540 76.5
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 2.1e-218 762.7 537 75.4
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 2.8e-218 762.3 557 75.2
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 3.6e-218 761.9 539 76.3
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 1.4e-217 760.0 537 77.1
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 1.8e-217 759.6 537 76.9
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 4.0e-217 758.4 547 76.8
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 5.2e-217 758.1 542 77.1
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 6.8e-217 757.7 544 76.7
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 6.8e-217 757.7 547 77.5
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 6.8e-217 757.7 556 75.2
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 8.9e-217 757.3 547 77.5
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 8.9e-217 757.3 539 76.4
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 1.5e-216 756.5 547 77.3
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 2.6e-216 755.7 603 69.2
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 2.6e-216 755.7 547 76.4
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 3.4e-216 755.4 558 74.4
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 1.3e-215 753.4 577 71.1
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 1.7e-215 753.1 561 75.0
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 6.4e-215 751.1 557 73.1
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 1.1e-214 750.4 550 73.6
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 1.2e-213 746.9 547 74.8
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 2.1e-213 746.1 539 76.3
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 3.5e-213 745.3 549 75.8
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 3.9e-212 741.9 539 75.7
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 8.6e-212 740.7 486 80.2
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 1.1e-211 740.3 503 76.9
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 4.3e-211 738.4 539 75.3
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 9.5e-211 737.3 541 75.8
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 1.6e-210 736.5 551 74.0
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 2.1e-210 736.1 551 74.0
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 2.8e-210 735.7 551 74.4
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 4.7e-210 734.9 577 70.5
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 6.2e-210 734.6 551 73.3
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 6.2e-210 734.6 553 73.4
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 8.1e-210 734.2 572 70.6
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 1.4e-209 733.4 552 73.2
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 5.2e-209 731.5 538 75.3
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 2.0e-208 729.6 546 74.2
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 2.6e-208 729.2 549 73.8
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 9.9e-208 727.2 555 72.8
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 9.9e-208 727.2 554 73.5
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 9.9e-208 727.2 554 73.5
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 1.3e-207 726.9 576 71.0
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 1.3e-207 726.9 538 74.3
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 1.4e-206 723.4 549 71.9
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 2.4e-206 722.6 551 73.0
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 4.2e-206 721.8 548 71.7
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 4.6e-205 718.4 554 72.9
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 7.8e-205 717.6 562 72.8
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 1.3e-204 716.8 546 73.8
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 1.1e-203 713.8 575 70.3
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 1.6e-202 709.9 583 69.6
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 9.9e-200 700.7 554 71.1
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 4.9e-199 698.4 547 70.9
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 6.4e-199 698.0 542 70.8
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 2.4e-198 696.0 548 70.3
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 1.0e-196 690.6 561 70.6
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 6.4e-191 671.4 560 68.9
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 4.6e-189 665.2 583 66.6
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 5.5e-182 641.7 556 66.9
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 1.2e-181 640.6 557 67.3
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 8.2e-178 627.9 444 75.9
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 1.1e-177 627.5 405 81.0
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 2.0e-176 623.2 508 70.5
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 1.0e-167 594.3 513 65.1
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.5e-166 589.7 546 58.2
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 1.2e-165 587.4 431 75.9
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 3.7e-162 575.9 529 57.7
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 9.4e-158 561.2 555 55.9
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 6.8e-140 501.9 409 68.7
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 2.7e-128 463.4 338 72.5
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 1.6e-125 454.1 415 59.3
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 2.8e-125 453.4 388 64.9
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 1.5e-118 431.0 310 76.8
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 2.7e-112 410.2 362 64.1
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 4.9e-106 389.4 285 74.4
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.0e-103 380.2 238 82.8
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 8.6e-103 378.6 432 52.3
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 3.7e-98 363.2 273 77.7
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.5e-91 341.3 326 58.3
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.5e-91 341.3 326 58.3
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 3.3e-78 297.0 239 66.9
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 6.2e-77 292.7 216 72.2
unitig_899.g15420 Utricularia gibba HOM05D003771 ORTHO05D004396 9.0e-76 288.9 211 74.4
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 7.6e-75 285.8 311 55.6
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 1.4e-73 281.6 192 76.6
Solyc05g025750.3 Solanum lycopersicum HOM05D003771 ORTHO05D004396 1.2e-72 278.5 210 80.0
Peaxi162Scf00322g01516 Petunia axillaris HOM05D003771 ORTHO05D004396 3.3e-70 270.4 210 77.6
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 1.3e-66 258.5 198 69.7
Lsat_1_v5_gn_8_70001 Lactuca sativa HOM05D003771 ORTHO05D004396 2.7e-56 224.2 209 62.2
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 5.7e-54 216.5 140 77.9
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.1e-52 210.3 174 59.8
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 7.2e-49 199.5 209 49.8
TAR633G1498 Trochodendron aralioides HOM05D003771 ORTHO05D004396 6.3e-45 186.4 140 76.4
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 4.1e-44 183.7 110 84.5
Oeu036959.1 Olea europaea HOM05D003771 ORTHO05D004396 7.9e-40 169.5 133 77.4
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 4.1e-36 157.1 431 29.9
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 9.1e-36 156.0 152 60.5
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.7e-29 135.2 82 86.6
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 1.6e-27 128.6 97 69.1
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 2.0e-22 111.7 113 57.5
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 4.5e-19 100.5 99 57.6
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 5.5e-17 93.6 69 69.6
CDE06G2293 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.2e-16 92.4 90 65.6
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 1.4e-15 89.0 51 86.3
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 5.7e-14 83.6 151 38.4
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.3e-13 82.4 44 90.9
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 4.9e-13 80.5 76 53.9
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.4e-12 78.2 49 85.7
Zm00001eb236470 Zea mays HOM05D003771 ORTHO05D004396 1.0e-07 62.8 71 52.1
Zm00001eb164270 Zea mays HOM05D003771 ORTHO05D004396 3.0e-07 61.2 71 50.7
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 8.9e-07 59.7 411 24.8
Zm00001eb086760 Zea mays HOM05D003771 ORTHO05D004396 1.5e-06 58.9 35 77.1
Os03g0265666 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 5.7e-06 57.0 97 55.7


User provided reference genes

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