Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g23357_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D002834 1.6e-59 232.6 121 100.0
MBI02_g26235_MAGBIO Magnolia biondii HOM05D002642 ORTHO05D002834 5.2e-23 111.3 61 91.8
MBI06_g38705_MAGBIO Magnolia biondii HOM05D002642 ORTHO05D002834 5.2e-23 111.3 61 91.8
MBI15_g07209_MAGBIO Magnolia biondii HOM05D002642 ORTHO05D002834 1.5e-22 109.8 61 90.2
MBI19_g29451_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005870 2.0e-22 109.4 79 77.2
MBI09_g04375_MAGBIO Magnolia biondii HOM05D002642 ORTHO05D002834 2.9e-21 105.5 65 83.1
MBI18_g42385_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D002980 1.1e-20 103.6 61 86.9
MBI14_g16735_MAGBIO Magnolia biondii HOM05D002642 ORTHO05D002834 4.1e-20 101.7 61 83.6
TAR626G0477 Trochodendron aralioides HOM05D000772 ORTHO05D005870 3.6e-16 88.6 79 64.6
Lalb_Chr18g0056871 Lupinus albus HOM05D000772 ORTHO05D005870 8.9e-15 84.0 79 57.0
Nn1g07327 Nelumbo nucifera HOM05D000772 ORTHO05D005870 8.9e-15 84.0 79 60.8
Glyma.09G009000 Glycine max HOM05D000772 ORTHO05D005870 3.4e-14 82.0 79 57.0
Lj6g0027188 Lotus japonicus HOM05D000772 ORTHO05D005870 4.4e-14 81.6 79 58.2
Potri.004G002000 Populus trichocarpa HOM05D000772 ORTHO05D005870 4.4e-14 81.6 79 57.0
QL10p003440 Quercus lobata HOM05D000772 ORTHO05D005870 4.4e-14 81.6 126 46.8
Manes.16G001700 Manihot esculenta HOM05D000772 ORTHO05D005870 5.8e-14 81.3 60 68.3
Prupe.4G012800 Prunus persica HOM05D000772 ORTHO05D005870 5.8e-14 81.3 79 60.8
VMungo0540G2456 Vigna mungo HOM05D000772 ORTHO05D005870 5.8e-14 81.3 78 57.7
AUR62042680 Chenopodium quinoa HOM05D000772 ORTHO05D005870 1.3e-13 80.1 79 57.0
Glyma.15G113400 Glycine max HOM05D000772 ORTHO05D005870 1.3e-13 80.1 75 57.3
QL03p008421 Quercus lobata HOM05D000772 ORTHO05D005870 1.3e-13 80.1 79 57.0
CANSAT56G4303 Cannabis sativa HOM05D000772 ORTHO05D005870 1.7e-13 79.7 79 54.4
AUR62037339 Chenopodium quinoa HOM05D000772 ORTHO05D005870 1.7e-13 79.7 79 57.0
CSS0037532 Camellia sinensis var. sinensis HOM05D000772 ORTHO05D005870 2.2e-13 79.3 79 57.0
PGSC0003DMG401023562 Solanum tuberosum HOM05D000772 ORTHO05D005870 2.2e-13 79.3 62 64.5
Lalb_Chr15g0087881 Lupinus albus HOM05D000772 ORTHO05D005870 3.7e-13 78.6 79 59.5
Sed0005234 Sechium edule HOM05D000772 ORTHO05D005870 3.7e-13 78.6 79 55.7
Haze_06897 Corylus avellana HOM05D000772 ORTHO05D005870 6.4e-13 77.8 79 55.7
Sabra11G0013800 Salix brachista HOM05D000772 ORTHO05D005870 6.4e-13 77.8 79 57.0
Cfa000127 Carpinus fangiana HOM05D000772 ORTHO05D005870 8.3e-13 77.4 79 55.7
Solyc04g014680.4 Solanum lycopersicum HOM05D000772 ORTHO05D005870 8.3e-13 77.4 79 57.0
Sopen04g006780 Solanum pennellii HOM05D000772 ORTHO05D005870 8.3e-13 77.4 79 57.0
Actinidia26874 Actinidia chinensis HOM05D000772 ORTHO05D005870 1.1e-12 77.0 79 57.0
Ah.14g087740 Amaranthus hybridus HOM05D000772 ORTHO05D005870 1.1e-12 77.0 79 55.7
ClCG01G021580 Citrullus lanatus HOM05D000772 ORTHO05D005870 1.1e-12 77.0 79 54.4
Dinv13955 Davidia involucrata HOM05D000772 ORTHO05D005870 1.1e-12 77.0 79 55.7
TPR.G13062 Trifolium pratense HOM05D000772 ORTHO05D005870 1.1e-12 77.0 78 52.6
CAN.G1263.10 Capsicum annuum HOM05D000772 ORTHO05D005870 1.4e-12 76.6 79 57.0
Cc09_g01020 Coffea canephora HOM05D000772 ORTHO05D005870 1.4e-12 76.6 60 65.0
RcHm_v2.0_Chr5g0001711 Rosa chinensis HOM05D000772 ORTHO05D005870 1.9e-12 76.3 79 57.0
Potri.011G022600 Populus trichocarpa HOM05D000772 ORTHO05D005870 2.4e-12 75.9 79 55.7
EL10Ac8g20164 Beta vulgaris HOM05D000772 ORTHO05D005870 3.2e-12 75.5 79 55.7
FAN21G2962 Fragaria x ananassa HOM05D000772 ORTHO05D005870 4.1e-12 75.1 79 57.0
MD05G1355900 Malus domestica HOM05D000772 ORTHO05D005870 7.1e-12 74.3 79 55.7
arahy.Tifrunner.gnm1.ann1.D5KZZN Arachis hypogaea HOM05D000772 ORTHO05D005870 9.2e-12 73.9 79 53.2
CAN.G1186.16 Capsicum annuum HOM05D000772 ORTHO05D005870 9.2e-12 73.9 79 54.4
CsaV3_6G048620 Cucumis sativus L. HOM05D000772 ORTHO05D005870 9.2e-12 73.9 79 51.9
FvH4_3g01150 Fragaria vesca HOM05D000772 ORTHO05D005870 9.2e-12 73.9 100 48.0
FAN25G3775 Fragaria x ananassa HOM05D000772 ORTHO05D005870 9.2e-12 73.9 79 55.7
Nitab4.5_0000143g0450 Nicotiana tabacum HOM05D000772 ORTHO05D005870 9.2e-12 73.9 79 54.4
Eucgr.D01383 Eucalyptus grandis HOM05D000772 ORTHO05D005870 1.2e-11 73.6 79 53.2
Nitab4.5_0000574g0290 Nicotiana tabacum HOM05D000772 ORTHO05D005870 1.6e-11 73.2 79 53.2
arahy.Tifrunner.gnm1.ann1.JAFV55 Arachis hypogaea HOM05D000772 ORTHO05D005870 2.1e-11 72.8 79 53.2
Oeu003169.1 Olea europaea HOM05D000772 ORTHO05D005870 2.1e-11 72.8 60 65.0
MD10G1329200 Malus domestica HOM05D000772 ORTHO05D005870 2.7e-11 72.4 79 53.2
Medtr2g025190 Medicago truncatula HOM05D000772 ORTHO05D005870 2.7e-11 72.4 79 53.2
Sabra04G0000900 Salix brachista HOM05D000772 ORTHO05D005870 2.7e-11 72.4 84 52.4
Dinv07385 Davidia involucrata HOM05D000772 ORTHO05D005870 3.5e-11 72.0 78 56.4
Nitab4.5_0001198g0190 Nicotiana tabacum HOM05D000772 ORTHO05D005870 4.6e-11 71.6 79 51.9
Nitab4.5_0008006g0050 Nicotiana tabacum HOM05D000772 ORTHO05D005870 4.6e-11 71.6 79 50.6
Oeu049723.2 Olea europaea HOM05D000772 ORTHO05D005870 4.6e-11 71.6 62 61.3
PGSC0003DMG400013337 Solanum tuberosum HOM05D000772 ORTHO05D005870 4.6e-11 71.6 79 51.9
SGA_v2.0_scaffold7G03773 Striga asiatica HOM05D000772 ORTHO05D005870 4.6e-11 71.6 79 51.9
MSTRG.13123 Avicennia marina HOM05D000772 ORTHO05D005870 6.0e-11 71.2 75 53.3
Peaxi162Scf00442g00524 Petunia axillaris HOM05D000772 ORTHO05D005870 6.0e-11 71.2 78 52.6
SalBow8G2823 Salvia bowleyana HOM05D000772 ORTHO05D005870 6.0e-11 71.2 79 53.2
Sopen11g006830 Solanum pennellii HOM05D000772 ORTHO05D005870 6.0e-11 71.2 79 51.9
Cpa.g.sc75.122 Carica papaya HOM05D000772 ORTHO05D005870 7.8e-11 70.9 79 51.9
Gohir.A06G152400 Gossypium hirsutum HOM05D000772 ORTHO05D005870 7.8e-11 70.9 79 51.9
Gorai.010G185400 Gossypium raimondii HOM05D000772 ORTHO05D005870 7.8e-11 70.9 79 53.2
Gorai.011G010600 Gossypium raimondii HOM05D000772 ORTHO05D005870 1.0e-10 70.5 79 49.4
ATR1128G042 Amborella trichopoda HOM05D000772 ORTHO05D005870 1.3e-10 70.1 79 49.4
Gohir.A10G010000 Gossypium hirsutum HOM05D000772 ORTHO05D005870 1.3e-10 70.1 60 56.7
SGA_v2.0_scaffold4G01888 Striga asiatica HOM05D000772 ORTHO05D005870 1.3e-10 70.1 60 60.0
TWI38G0601 Tripterygium wilfordii HOM05D000772 ORTHO05D005870 1.3e-10 70.1 60 58.3
Aqoxy1G04157 Aquilegia oxysepala HOM05D000772 ORTHO05D005870 1.7e-10 69.7 79 50.6
MSTRG.16015 Avicennia marina HOM05D000772 ORTHO05D005870 1.7e-10 69.7 60 61.7
Migut.M01380 Erythranthe guttata HOM05D000772 ORTHO05D005870 1.7e-10 69.7 79 51.9
Lsat_1_v5_gn_4_62920 Lactuca sativa HOM05D000772 ORTHO05D005870 1.7e-10 69.7 59 57.6
Lsat_1_v5_gn_7_14641 Lactuca sativa HOM05D000772 ORTHO05D005870 1.7e-10 69.7 79 55.7
Aa31LG6G4390 Aethionema arabicum HOM05D000772 ORTHO05D005870 2.3e-10 69.3 97 41.2
CDE06G1517 Ceratophyllum demersum HOM05D000772 ORTHO05D005870 3.0e-10 68.9 79 49.4
Ciclev10015369m.g Citrus clementina HOM05D000772 ORTHO05D005870 3.0e-10 68.9 79 49.4
DCAR_002212 Daucus carota HOM05D000772 ORTHO05D005870 3.0e-10 68.9 79 50.6
Solyc11g012040.2 Solanum lycopersicum HOM05D000772 ORTHO05D005870 3.0e-10 68.9 79 50.6
Thecc.06G231200 Theobroma cacao HOM05D000772 ORTHO05D005870 3.0e-10 68.9 79 50.6
CiPaw.10G076400 Carya illinoinensis HOM05D000772 ORTHO05D005870 3.9e-10 68.6 80 51.2
ECA234G1936 Erigeron canadensis HOM05D000772 ORTHO05D005870 3.9e-10 68.6 60 58.3
THA.LOC104813506 Tarenaya hassleriana HOM05D000772 ORTHO05D005870 3.9e-10 68.6 79 46.8
Lj1C1238G16 Lonicera japonica HOM05D000772 ORTHO05D005870 5.1e-10 68.2 78 51.3
CSS0030970 Camellia sinensis var. sinensis HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 50.6
Ca_00710_v3 Cicer arietinum L. HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 51.9
Gohir.D10G009700 Gossypium hirsutum HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 48.1
Oeu002755.1 Olea europaea HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 51.9
PSO210G1407 Papaver somniferum HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 49.4
PSO832G3415 Papaver somniferum HOM05D000772 ORTHO05D005870 6.6e-10 67.8 79 49.4
COL.COLO4_31859 Corchorus olitorius HOM05D000772 ORTHO05D005870 8.6e-10 67.4 79 49.4
Duzib235G0131 Durio zibethinus HOM05D000772 ORTHO05D005870 1.1e-09 67.0 79 49.4
Gohir.D06G158700 Gossypium hirsutum HOM05D000772 ORTHO05D005870 1.5e-09 66.6 76 51.3
Hund21157 Selenicereus undatus HOM05D000772 ORTHO05D005870 1.5e-09 66.6 60 56.7
vmacro03654 Vaccinium macrocarpon HOM05D000772 ORTHO05D005870 1.9e-09 66.2 43 69.8
Atru.chr1.2492 Acer truncatum HOM05D000772 ORTHO05D005870 2.5e-09 65.9 79 49.4
Sed0009605 Sechium edule HOM05D000772 ORTHO05D005870 3.3e-09 65.5 79 49.4
Duzib192G0041 Durio zibethinus HOM05D000772 ORTHO05D005870 4.3e-09 65.1 79 48.1
Gohir.D05G176600 Gossypium hirsutum HOM05D000772 ORTHO05D005870 4.3e-09 65.1 79 45.6
Gorai.009G182000 Gossypium raimondii HOM05D000772 ORTHO05D005870 4.3e-09 65.1 79 45.6
TWI38G1260 Tripterygium wilfordii HOM05D000772 ORTHO05D005870 4.3e-09 65.1 60 56.7
Actinidia02328 Actinidia chinensis HOM05D000772 ORTHO05D005870 5.6e-09 64.7 79 49.4
THA.LOC104812986 Tarenaya hassleriana HOM05D000772 ORTHO05D005870 7.3e-09 64.3 60 53.3
TAR627G0207 Trochodendron aralioides HOM05D000772 ORTHO05D005870 7.3e-09 64.3 61 52.5
Gohir.A05G173600 Gossypium hirsutum HOM05D000772 ORTHO05D005870 1.2e-08 63.5 79 45.6
SalBow1G5227 Salvia bowleyana HOM05D000772 ORTHO05D005870 2.1e-08 62.8 79 49.4
AT4G22290 Arabidopsis thaliana HOM05D000772 ORTHO05D005870 2.8e-08 62.4 94 38.3
unitig_748.g7595 Utricularia gibba HOM05D000772 ORTHO05D005870 2.8e-08 62.4 79 49.4
Actinidia39265 Actinidia chinensis HOM05D000772 ORTHO05D005870 3.6e-08 62.0 78 50.0
A09p26620 Brassica napus HOM05D000772 ORTHO05D005870 4.7e-08 61.6 78 43.6
BraA09t38235Z Brassica rapa HOM05D000772 ORTHO05D005870 4.7e-08 61.6 78 43.6
CARHR229190 Cardamine hirsuta HOM05D000772 ORTHO05D005870 6.2e-08 61.2 78 44.9
AL7G31330 Arabidopsis lyrata HOM05D000772 ORTHO05D005870 8.1e-08 60.8 94 37.2
MELO3C007426.2 Cucumis melo HOM05D000772 ORTHO05D005870 8.1e-08 60.8 61 50.8
C07p51760 Brassica napus HOM05D000772 ORTHO05D005870 1.1e-07 60.5 78 44.9
PGR004G0011 Punica granatum HOM05D000772 ORTHO05D005870 1.1e-07 60.5 78 47.4
vmacro23326 Vaccinium macrocarpon HOM05D000772 ORTHO05D005870 1.1e-07 60.5 80 50.0
BcaC04g21259 Brassica carinata HOM05D000772 ORTHO05D005870 1.4e-07 60.1 78 42.3
C09p33740 Brassica napus HOM05D000772 ORTHO05D005870 1.4e-07 60.1 78 42.3
BolC9t56208H Brassica oleracea HOM05D000772 ORTHO05D005870 1.4e-07 60.1 78 42.3
Sp7g20410 Schrenkiella parvula HOM05D000772 ORTHO05D005870 1.4e-07 60.1 78 44.9
Sc17g0007660 Simmondsia chinensis HOM05D000772 ORTHO05D005870 1.4e-07 60.1 56 53.6
AL6G47650 Arabidopsis lyrata HOM05D000772 ORTHO05D005870 1.8e-07 59.7 78 42.3
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 3.1e-07 58.9 98 40.8
Rhsim02G0104300 Rhododendron simsii HOM05D000772 ORTHO05D005870 4.0e-07 58.5 71 47.9
DCAR_004867 Daucus carota HOM05D000772 ORTHO05D005870 5.2e-07 58.2 79 49.4
HanXRQChr15g0470841 Helianthus annuus HOM05D000772 ORTHO05D005870 5.2e-07 58.2 60 58.3
CDE04G3297 Ceratophyllum demersum HOM05D000772 ORTHO05D005870 6.8e-07 57.8 79 46.8
BcaB01g01771 Brassica carinata HOM05D000772 ORTHO05D005870 8.9e-07 57.4 78 42.3
BcaNung02506 Brassica carinata HOM05D000772 ORTHO05D005870 8.9e-07 57.4 78 44.9
BolC7t45678H Brassica oleracea HOM05D000772 ORTHO05D005870 8.9e-07 57.4 78 44.9
Carub.0007s1902 Capsella rubella HOM05D000772 ORTHO05D005870 8.9e-07 57.4 94 37.2
CARHR253490 Cardamine hirsuta HOM05D000772 ORTHO05D005870 1.2e-06 57.0 78 41.0
Thhalv10025202m.g Eutrema salsugineum HOM05D000772 ORTHO05D005870 1.2e-06 57.0 78 43.6
Thhalv10028632m.g Eutrema salsugineum HOM05D000772 ORTHO05D005870 1.2e-06 57.0 78 41.0
Phvul.006G144300 Phaseolus vulgaris HOM05D000772 ORTHO05D005870 1.2e-06 57.0 54 51.9
BraA03t14409Z Brassica rapa HOM05D000772 ORTHO05D005870 2.0e-06 56.2 78 43.6
MD11G1023600 Malus domestica HOM05D000772 ORTHO05D010415 2.0e-06 56.2 62 46.8
BcaC09g51144 Brassica carinata HOM05D000772 ORTHO05D005870 3.4e-06 55.5 78 42.3
A01p13650 Brassica napus HOM05D000772 ORTHO05D005870 3.4e-06 55.5 78 42.3
C01p16530 Brassica napus HOM05D000772 ORTHO05D005870 3.4e-06 55.5 78 42.3
BolC1t01603H Brassica oleracea HOM05D000772 ORTHO05D005870 3.4e-06 55.5 78 42.3
BraA01t01308Z Brassica rapa HOM05D000772 ORTHO05D005870 3.4e-06 55.5 78 42.3
BcaNung01698 Brassica carinata HOM05D000772 ORTHO05D005870 4.4e-06 55.1 78 42.3
Sp6g04830 Schrenkiella parvula HOM05D000772 ORTHO05D005870 4.4e-06 55.1 78 39.7
BcaNung03747 Brassica carinata HOM05D000772 ORTHO05D005870 5.8e-06 54.7 78 41.0
A03p53430 Brassica napus HOM05D000772 ORTHO05D005870 5.8e-06 54.7 78 42.3
SMO356G0214 Selaginella moellendorffii HOM05D000772 ORTHO05D002601 7.6e-06 54.3 79 38.0


User provided reference genes

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