Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.3e-209 733.0 434 100.0
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 1.1e-115 421.0 468 61.8
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.6e-114 415.6 379 63.3
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 3.9e-113 412.5 455 57.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 4.3e-112 409.1 364 67.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.8e-111 406.4 386 61.4
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 2.0e-109 400.2 385 60.3
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 2.9e-108 396.4 383 60.8
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 4.3e-104 382.5 379 58.3
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 2.8e-103 379.8 383 62.4
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 4.8e-103 379.0 389 57.6
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 3.1e-102 376.3 378 60.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 4.5e-101 372.5 372 57.5
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 5.9e-101 372.1 368 60.9
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 6.5e-100 368.6 380 57.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.9e-99 367.1 463 57.2
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 5.5e-99 365.5 462 50.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.8e-97 360.5 463 52.1
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.4e-96 355.9 368 57.6
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 4.4e-96 355.9 387 56.8
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 2.2e-95 353.6 418 54.1
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 2.8e-95 353.2 367 58.0
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.8e-95 353.2 358 57.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.4e-94 350.9 390 56.4
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 2.0e-93 347.1 398 54.5
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.1e-91 341.3 393 53.4
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.6e-90 337.4 452 51.1
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 3.9e-89 332.8 452 48.7
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.9e-89 332.8 409 50.6
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 6.7e-89 332.0 376 51.9
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.1e-88 331.3 395 51.1
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.1e-88 331.3 378 51.6
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.5e-88 330.9 378 55.0
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 2.0e-88 330.5 452 48.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.8e-87 326.6 398 54.3
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 6.3e-87 325.5 402 54.7
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.4e-86 324.3 544 44.9
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 9.1e-86 321.6 442 51.6
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.5e-85 319.7 453 50.8
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.3e-84 317.8 414 49.8
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 2.2e-84 317.0 456 48.9
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 7.2e-83 312.0 398 52.0
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 7.2e-83 312.0 378 51.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 7.2e-83 312.0 378 51.9
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 9.4e-83 311.6 364 54.1
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-82 311.2 454 50.0
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 2.7e-82 310.1 453 49.2
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-82 309.7 361 57.6
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 3.6e-82 309.7 312 56.1
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.0e-81 306.2 454 49.8
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 8.8e-81 305.1 371 50.4
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 2.6e-80 303.5 379 50.1
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 2.6e-80 303.5 380 50.8
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.6e-80 303.5 335 53.4
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.8e-79 299.3 419 47.5
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.1e-78 296.2 382 51.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 4.5e-77 292.7 369 48.2
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 4.5e-77 292.7 367 48.0
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 1.7e-76 290.8 377 52.3
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 7.2e-75 285.4 435 52.0
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-74 284.3 442 49.5
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 2.1e-74 283.9 550 38.5
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.1e-74 283.9 376 51.3
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.1e-74 283.9 356 50.0
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 4.7e-74 282.7 359 49.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 4.7e-74 282.7 371 46.6
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 6.1e-74 282.3 366 47.3
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.1e-74 282.3 373 49.6
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.4e-73 281.2 391 47.1
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-73 280.8 354 48.3
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 1.8e-73 280.8 372 46.2
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.3e-73 280.4 357 47.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 4.0e-73 279.6 356 49.2
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 5.2e-73 279.3 372 46.2
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 5.2e-73 279.3 397 46.3
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 5.2e-73 279.3 379 47.8
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 8.8e-73 278.5 354 48.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 8.8e-73 278.5 384 47.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.5e-72 277.7 379 47.5
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.6e-72 276.9 352 48.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-72 276.6 353 47.0
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 3.4e-72 276.6 359 46.2
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 4.4e-72 276.2 352 47.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 4.4e-72 276.2 352 47.2
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.4e-72 276.2 353 47.0
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 7.5e-72 275.4 352 47.2
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 9.8e-72 275.0 362 48.9
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.2e-71 273.9 368 51.1
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 3.7e-71 273.1 366 51.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 6.3e-71 272.3 354 46.6
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 8.3e-71 271.9 356 46.1
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.1e-70 271.6 365 46.0
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.1e-70 270.0 364 47.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 4.1e-70 269.6 353 47.3
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 1.2e-69 268.1 352 47.2
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.6e-69 267.7 398 44.0
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.7e-69 266.9 360 47.5
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.7e-69 266.9 335 48.7
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.5e-69 266.5 371 44.7
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 5.9e-69 265.8 380 45.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.0e-68 265.0 364 46.4
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.3e-68 264.6 399 45.1
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 1.7e-68 264.2 388 44.8
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.3e-68 263.8 364 46.7
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.9e-68 263.5 399 43.9
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 2.9e-68 263.5 380 46.1
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.1e-67 261.5 351 47.0
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 4.2e-67 259.6 356 46.3
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.5e-67 259.2 365 48.8
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 1.2e-66 258.1 355 46.2
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.2e-66 258.1 381 46.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.6e-66 257.7 361 47.4
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.1e-66 257.3 387 45.5
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.6e-66 256.5 327 52.0
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-62 245.0 359 44.8
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-62 244.6 361 43.8
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.8e-62 244.2 358 45.5
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.8e-62 244.2 358 45.5
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 7.0e-62 242.3 143 85.3
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 5.9e-61 239.2 262 54.2
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 5.9e-61 239.2 327 50.8
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 2.3e-60 237.3 279 58.4
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.5e-59 233.8 413 42.6
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 4.3e-59 233.0 356 43.0
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 9.5e-59 231.9 372 43.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 2.1e-58 230.7 324 45.7
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 5.8e-56 222.6 209 58.9
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.3e-55 221.5 293 46.1
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 2.0e-53 214.2 402 40.5
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-53 214.2 445 38.4
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 2.0e-53 214.2 445 38.4
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.6e-50 203.4 113 88.5
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.7e-50 203.0 133 74.4
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.7e-50 203.0 133 74.4
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.7e-45 187.2 102 89.2
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.0e-41 173.3 116 79.3
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 9.2e-38 162.2 95 84.2
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.6e-37 159.8 140 57.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.9e-35 154.5 256 43.8
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.2e-34 151.8 142 48.6
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.6e-34 150.2 78 94.9
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 3.2e-30 137.1 306 33.7
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.5e-29 133.7 264 40.5
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 3.5e-29 133.7 265 40.8
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 6.0e-29 132.9 146 46.6
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 9.0e-25 119.0 64 90.6
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 6.0e-21 106.3 200 38.5
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.3e-20 105.1 67 79.1
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 5.1e-20 103.2 106 50.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.1e-19 102.1 88 58.0
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 7.3e-19 99.4 105 48.6
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 5.3e-17 93.2 61 73.8
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 2.0e-16 91.3 55 85.5
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.3e-15 88.6 141 41.8
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.7e-12 75.9 35 97.1
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.3e-10 72.0 103 38.8
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.8e-10 70.9 249 30.1
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 3.1e-09 67.4 105 35.2
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.1e-09 67.4 67 53.7
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 4.0e-09 67.0 52 63.5
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 2.0e-08 64.7 35 77.1
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.6e-08 62.8 74 44.6
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 7.6e-08 62.8 66 51.5
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 1.7e-07 61.6 47 63.8
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 1.7e-07 61.6 47 63.8
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 1.7e-07 61.6 47 63.8
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.2e-06 57.4 72 45.8


User provided reference genes

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