Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 7.8e-269 929.9 464 100.0
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.8e-194 682.2 466 76.2
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.9e-182 642.9 379 84.2
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.6e-181 639.8 369 86.4
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 8.0e-181 637.5 362 88.1
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.0e-180 637.1 379 83.6
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 1.8e-180 636.3 362 88.1
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.8e-180 636.3 367 87.2
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 5.2e-180 634.8 415 79.5
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 5.2e-180 634.8 430 77.7
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.2e-179 633.6 344 90.7
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 2.0e-179 632.9 430 77.2
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 3.4e-179 632.1 430 77.2
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 4.4e-179 631.7 359 88.3
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.5e-179 630.9 371 86.8
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.3e-178 630.2 362 87.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.9e-178 629.0 365 87.1
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.9e-178 629.0 363 87.6
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 6.4e-178 627.9 363 86.0
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 8.3e-178 627.5 369 85.1
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.1e-177 625.2 344 90.7
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 4.1e-177 625.2 357 88.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.1e-177 625.2 363 86.5
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.4e-177 624.8 412 77.9
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 9.2e-177 624.0 363 86.8
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 2.0e-176 622.9 383 81.5
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.6e-176 621.7 365 86.3
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.9e-176 621.3 346 89.0
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 7.8e-176 620.9 363 85.7
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 7.8e-176 620.9 383 81.2
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 7.8e-176 620.9 363 86.5
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.0e-175 620.5 365 86.0
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.0e-175 620.5 363 85.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.3e-175 619.4 365 85.8
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 3.9e-175 618.6 363 86.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 5.0e-175 618.2 373 82.0
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 5.0e-175 618.2 363 85.4
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 6.6e-175 617.8 367 83.7
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 1.1e-174 617.1 373 83.1
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 2.5e-174 615.9 363 84.3
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 4.3e-174 615.1 406 77.8
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.2e-173 613.6 373 81.5
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.6e-173 613.2 363 84.3
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.8e-173 612.5 368 84.5
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.8e-173 612.5 359 86.1
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.8e-173 612.5 359 86.1
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 3.6e-173 612.1 361 86.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 8.0e-173 610.9 362 84.0
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.0e-172 610.5 364 84.9
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.8e-172 609.8 359 85.5
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.8e-172 609.8 341 89.1
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-172 609.0 359 85.5
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.1e-172 609.0 359 85.5
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 6.8e-172 607.8 406 75.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.5e-171 606.7 368 83.4
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.0e-171 606.3 398 77.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 3.4e-171 605.5 359 84.7
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.4e-171 605.1 359 84.4
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 5.8e-171 604.7 355 85.6
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 5.8e-171 604.7 359 84.1
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.7e-170 603.2 363 83.2
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.7e-170 603.2 359 84.1
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.7e-170 603.2 359 84.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.7e-170 603.2 341 88.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.2e-170 602.8 359 83.3
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.9e-170 602.4 363 82.9
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 3.7e-170 602.1 367 81.7
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 3.7e-170 602.1 411 75.7
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 4.9e-170 601.7 355 84.5
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 4.9e-170 601.7 355 84.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.1e-169 600.5 373 83.1
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.9e-169 599.7 359 83.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 7.0e-169 597.8 374 80.5
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.5e-168 595.5 366 79.2
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 3.5e-168 595.5 364 81.6
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 4.6e-168 595.1 405 75.3
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 6.0e-168 594.7 348 84.5
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 6.0e-168 594.7 357 82.9
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 6.6e-167 591.3 364 81.9
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 9.5e-166 587.4 364 81.3
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.2e-165 587.0 360 81.7
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.2e-165 587.0 349 82.5
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-165 585.5 363 81.3
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 8.1e-165 584.3 341 85.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 8.1e-165 584.3 359 81.9
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-164 583.9 363 81.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 1.1e-164 583.9 363 81.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 2.9e-162 575.9 342 83.6
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 7.1e-161 571.2 342 84.8
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.1e-159 565.1 358 81.8
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 8.6e-159 564.3 314 89.2
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 9.5e-158 560.8 460 64.8
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 6.8e-156 554.7 381 73.8
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.8e-156 554.7 374 77.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.9e-154 549.3 353 80.7
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.1e-150 537.3 298 89.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.5e-150 537.0 328 82.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 3.3e-150 535.8 345 74.5
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.4e-148 530.4 370 74.6
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.8e-148 530.0 362 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 4.0e-148 528.9 366 71.6
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 5.2e-148 528.5 373 74.5
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 5.2e-148 528.5 344 75.3
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 6.8e-148 528.1 333 82.0
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 4.9e-146 521.9 430 65.6
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.1e-144 516.5 314 80.6
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.9e-142 510.0 353 72.8
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 5.3e-140 501.9 312 80.8
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.4e-137 493.8 364 67.3
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 6.0e-136 488.4 284 85.9
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.3e-135 487.3 374 70.3
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.6e-134 481.1 339 71.7
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 8.1e-125 451.4 268 84.7
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 6.9e-124 448.4 270 83.3
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.9e-122 443.0 267 83.1
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 9.3e-121 438.0 251 86.1
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 3.5e-120 436.0 271 81.5
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 7.9e-120 434.9 274 79.2
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 4.5e-99 365.9 206 88.8
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 6.3e-85 318.9 250 68.8
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.3e-84 315.8 183 85.8
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.5e-78 297.7 335 47.5
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-76 290.8 184 80.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 2.4e-76 290.4 332 46.4
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.6e-64 251.1 355 48.2
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.8e-63 247.7 143 86.7
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 8.9e-63 245.4 364 37.1
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.8e-62 241.9 132 87.1
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.4e-54 216.9 120 86.7
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.6e-51 208.0 372 37.6
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.5e-46 189.1 109 85.3
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.0e-39 166.8 109 78.9
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 2.4e-31 141.0 128 60.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 5.2e-31 139.8 101 69.3
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.7e-29 134.8 84 77.4
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-29 134.8 89 77.5
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 2.2e-29 134.4 79 86.1
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 4.2e-28 130.2 109 66.1
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 5.4e-28 129.8 79 81.0
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-24 118.6 75 78.7
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-24 118.6 75 78.7
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.3e-24 118.6 75 78.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.3e-24 118.6 64 89.1
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 3.6e-24 117.1 75 76.0
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-24 117.1 75 76.0
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.4e-23 115.2 75 74.7
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 4.0e-23 113.6 125 46.4
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.2e-19 102.1 64 79.7
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 9.0e-15 85.9 54 83.3
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 2.2e-13 81.3 44 88.6
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 9.3e-12 75.9 82 52.4
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 4.3e-09 67.0 74 52.7
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 4.3e-09 67.0 35 88.6
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 4.3e-09 67.0 36 88.9
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 8.2e-08 62.8 35 80.0
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 1.8e-07 61.6 37 73.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 3.1e-07 60.8 50 58.0
arahy.Tifrunner.gnm1.ann1.SQ6FML Arachis hypogaea HOM05D000121 ORTHO05D031608 4.0e-07 60.5 206 28.6


User provided reference genes

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