Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.1e-78 296.6 156 100.0
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 5.3e-44 181.4 155 64.5
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 7.6e-43 177.6 158 62.0
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 6.0e-40 167.9 154 62.3
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-39 166.4 158 62.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 3.0e-39 165.6 155 61.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 5.1e-39 164.9 158 59.5
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 9.7e-38 160.6 158 58.9
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.1e-36 157.1 160 59.4
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.1e-36 157.1 159 56.0
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 3.4e-35 152.1 148 60.8
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 4.5e-35 151.8 159 57.9
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 2.9e-34 149.1 161 57.1
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 3.8e-34 148.7 151 58.3
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.1e-33 147.1 161 53.4
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.1e-33 147.1 159 56.6
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 1.4e-33 146.7 158 56.3
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.2e-33 145.6 163 54.6
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.2e-33 145.6 163 54.6
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 4.2e-33 145.2 161 55.9
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 4.2e-33 145.2 159 55.3
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 1.8e-31 139.8 149 53.0
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.8e-31 139.8 156 55.1
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.3e-31 139.4 158 55.1
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 3.9e-31 138.7 150 50.7
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 5.1e-31 138.3 158 50.6
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 3.3e-30 135.6 161 50.9
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 7.4e-30 134.4 155 51.0
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 8.2e-29 131.0 153 51.6
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 1.4e-28 130.2 153 53.6
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 2.4e-28 129.4 159 50.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 4.1e-28 128.6 165 50.3
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 5.3e-28 128.3 157 49.0
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 9.1e-28 127.5 159 54.1
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.2e-27 127.1 156 48.7
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.5e-27 126.7 151 49.7
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 7.7e-27 124.4 151 51.7
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.0e-26 124.0 155 49.0
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 1.3e-26 123.6 161 49.1
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.7e-26 123.2 159 46.5
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 2.9e-26 122.5 160 53.1
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 2.9e-26 122.5 154 48.7
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 5.0e-26 121.7 162 45.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 8.5e-26 120.9 160 45.6
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.9e-25 119.8 157 47.8
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 3.2e-25 119.0 159 47.8
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.2e-25 118.6 160 47.5
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 5.5e-25 118.2 154 46.8
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 9.4e-25 117.5 161 45.3
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 1.2e-24 117.1 157 48.4
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.6e-24 116.7 158 47.5
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 1.6e-24 116.7 157 46.5
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 2.1e-24 116.3 155 46.5
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 2.1e-24 116.3 154 47.4
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 2.1e-24 116.3 167 49.7
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.7e-24 115.9 153 47.1
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 2.7e-24 115.9 163 47.9
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 3.6e-24 115.5 165 46.1
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.7e-24 115.2 154 49.4
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 4.7e-24 115.2 180 42.2
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 6.1e-24 114.8 158 46.8
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 7.9e-24 114.4 157 47.8
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-23 114.0 159 46.5
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 2.3e-23 112.8 167 43.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.0e-23 112.5 154 49.4
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 5.1e-23 111.7 165 43.0
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 5.1e-23 111.7 154 46.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 5.1e-23 111.7 159 46.5
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 6.7e-23 111.3 166 45.2
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.1e-22 110.5 170 44.7
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.5e-22 110.2 162 45.1
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.8e-21 105.9 161 43.5
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 8.2e-21 104.4 150 41.3
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 1.4e-20 103.6 159 47.8
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 3.1e-20 102.4 166 44.0
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 4.1e-20 102.1 157 43.3
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 9.1e-20 100.9 163 39.3
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 9.1e-20 100.9 163 39.9
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 3.5e-19 99.0 158 44.3
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.0e-18 97.4 168 40.5
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.7e-18 96.7 162 40.7
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.8e-18 95.5 153 43.8
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.1e-17 94.0 153 43.8
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.1e-17 94.0 151 43.0
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 2.5e-17 92.8 163 39.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.5e-17 92.8 155 43.9
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 3.2e-17 92.4 153 43.1
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.2e-17 92.4 148 41.9
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.2e-17 92.4 148 41.9
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 5.5e-17 91.7 155 42.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.6e-16 90.1 148 42.6
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 8.0e-16 87.8 153 40.5
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.0e-16 87.8 157 40.1
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 1.0e-15 87.4 157 39.5
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 1.8e-15 86.7 118 46.6
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 2.3e-15 86.3 164 38.4
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 3.0e-15 85.9 155 41.3
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 3.0e-15 85.9 160 41.9
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 3.9e-15 85.5 154 39.0
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.9e-15 85.5 154 39.0
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 6.7e-15 84.7 151 39.7
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 8.8e-15 84.3 151 39.7
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 8.8e-15 84.3 151 39.7
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 1.1e-14 84.0 151 39.7
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 1.1e-14 84.0 151 39.7
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 1.5e-14 83.6 153 39.2
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 2.0e-14 83.2 151 39.1
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.6e-14 82.8 156 41.0
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 3.3e-14 82.4 152 42.1
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.3e-14 82.4 148 41.2
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 4.4e-14 82.0 152 41.4
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 4.4e-14 82.0 149 39.6
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 7.4e-14 81.3 148 41.2
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 7.4e-14 81.3 151 38.4
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 9.7e-14 80.9 148 39.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 9.7e-14 80.9 148 38.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 9.7e-14 80.9 148 38.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 1.7e-13 80.1 152 38.2
SEGI_26334 Sequoiadendron giganteum HOM05D000047 ORTHO05D000044 2.8e-13 79.3 159 37.1
SEGI_39312 Sequoiadendron giganteum HOM05D004507 ORTHO05D004874 2.8e-13 79.3 151 34.4
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-13 79.0 151 37.7
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 3.7e-13 79.0 151 37.7
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 3.7e-13 79.0 151 40.4
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 4.8e-13 78.6 151 37.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 6.3e-13 78.2 158 38.0
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 8.2e-13 77.8 150 38.0
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 1.8e-12 76.6 149 37.6
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 2.4e-12 76.3 148 37.8
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 9.1e-12 74.3 148 39.2
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 9.1e-12 74.3 157 39.5
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.2e-11 73.9 149 37.6
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.2e-11 73.9 147 36.1
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 1.6e-11 73.6 145 37.9
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 7.7e-11 71.2 144 39.6
SEGI_00160 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.3e-10 70.5 158 34.8
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 1.7e-10 70.1 150 40.7
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 1.7e-10 70.1 150 40.7
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.8e-10 68.9 154 34.4
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 5.0e-10 68.6 142 37.3
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 8.5e-10 67.8 150 39.3
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 8.5e-10 67.8 149 38.3
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 8.5e-10 67.8 150 39.3
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.2e-09 65.9 165 32.7
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 3.2e-09 65.9 47 66.0
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 4.2e-09 65.5 153 34.6
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 4.2e-09 65.5 154 36.4
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 5.5e-09 65.1 146 32.2
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 8.0e-08 61.2 50 66.0
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.8e-07 60.1 145 32.4
MBI15_g34420_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.8e-07 60.1 65 50.8
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.3e-07 59.7 153 35.3
HPP92_015856 Vanilla planifolia HOM05D004507 ORTHO05D004874 2.3e-07 59.7 126 35.7
SEGI_14977 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.7e-07 58.2 153 31.4
Zm00001eb233860 Zea mays HOM05D004507 ORTHO05D004874 8.8e-07 57.8 55 47.3
SHI24759 Sapria himalayana HOM05D016562 ORTHO05D004874 2.6e-06 56.2 41 58.5
CDE02G3054 Ceratophyllum demersum HOM05D001966 ORTHO05D011119 3.3e-06 55.8 70 42.9
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 4.4e-06 55.5 53 58.5
SEGI_19253 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 7.5e-06 54.7 145 34.5
SEGI_31432 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 7.5e-06 54.7 145 34.5
Zm00001eb178020 Zea mays HOM05D004507 ORTHO05D004874 7.5e-06 54.7 149 29.5


User provided reference genes

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