Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 1.4e-101 372.9 182 100.0
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 8.2e-81 303.9 182 77.5
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 2.4e-80 302.4 182 77.5
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 3.1e-80 302.0 182 77.5
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 7.7e-79 297.4 175 77.7
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 8.5e-78 293.9 182 75.3
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 8.5e-78 293.9 178 75.8
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 1.5e-77 293.1 182 75.3
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 3.2e-77 292.0 175 77.7
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 5.5e-77 291.2 182 72.5
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 5.5e-77 291.2 178 76.4
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 9.4e-77 290.4 175 76.0
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 1.6e-76 289.7 182 73.6
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 2.7e-76 288.9 183 74.3
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 3.6e-76 288.5 182 74.2
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 6.1e-76 287.7 182 74.7
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 8.0e-76 287.3 175 74.9
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 3.0e-75 285.4 182 73.6
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 8.8e-75 283.9 178 72.5
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 1.5e-74 283.1 175 73.1
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 2.6e-74 282.3 182 70.9
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 2.6e-74 282.3 175 74.3
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 3.4e-74 282.0 181 71.8
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 4.4e-74 281.6 176 72.7
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 9.8e-74 280.4 182 72.0
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 9.8e-74 280.4 180 72.8
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 1.3e-73 280.0 178 71.9
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 2.2e-73 279.3 182 71.4
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 2.8e-73 278.9 182 71.4
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 3.7e-73 278.5 181 71.8
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 3.7e-73 278.5 182 69.8
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 3.7e-73 278.5 182 71.4
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 4.8e-73 278.1 182 70.9
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 6.3e-73 277.7 178 70.2
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 6.3e-73 277.7 174 72.4
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 8.3e-73 277.3 176 71.6
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 8.3e-73 277.3 182 69.2
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 1.4e-72 276.6 179 71.5
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.8e-72 276.2 175 73.1
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 4.1e-72 275.0 182 69.8
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 5.4e-72 274.6 177 70.6
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 7.0e-72 274.2 178 71.3
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 7.0e-72 274.2 182 69.2
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 9.1e-72 273.9 175 74.3
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 9.1e-72 273.9 175 72.0
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 1.6e-71 273.1 230 59.1
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 2.0e-71 272.7 178 70.2
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 2.0e-71 272.7 179 72.6
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 2.0e-71 272.7 180 67.8
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 2.0e-71 272.7 175 71.4
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 2.0e-71 272.7 176 72.2
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 2.7e-71 272.3 182 69.2
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 3.5e-71 271.9 175 70.9
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 3.5e-71 271.9 178 70.2
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 7.7e-71 270.8 178 70.8
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.0e-70 270.4 181 68.5
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 1.0e-70 270.4 180 70.6
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 1.0e-70 270.4 181 68.5
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 1.0e-70 270.4 181 68.5
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.0e-70 270.4 175 70.9
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 1.3e-70 270.0 181 68.5
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 1.7e-70 269.6 179 68.2
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 2.2e-70 269.2 181 67.4
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 2.2e-70 269.2 207 63.3
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 2.2e-70 269.2 208 63.0
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 2.9e-70 268.9 178 68.5
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 3.8e-70 268.5 183 71.0
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 3.8e-70 268.5 178 69.1
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 3.8e-70 268.5 178 69.1
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 3.8e-70 268.5 175 70.3
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 6.5e-70 267.7 178 68.0
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 1.1e-69 266.9 178 69.7
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 1.5e-69 266.5 178 69.1
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 1.5e-69 266.5 176 66.5
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 2.5e-69 265.8 175 69.7
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 3.2e-69 265.4 178 67.4
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 4.2e-69 265.0 173 72.8
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 5.5e-69 264.6 178 68.0
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 1.6e-68 263.1 181 68.0
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 4.7e-68 261.5 175 70.3
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 1.0e-67 260.4 161 73.9
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 1.4e-67 260.0 178 67.4
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 6.8e-67 257.7 175 70.9
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 6.8e-67 257.7 175 70.9
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 1.2e-66 256.9 180 66.7
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 1.3e-65 253.4 178 68.5
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 2.8e-65 252.3 162 71.6
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 6.3e-65 251.1 178 64.6
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 9.8e-58 227.3 172 64.0
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 1.8e-56 223.0 163 64.4
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 4.1e-56 221.9 163 62.6
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 5.0e-54 214.9 155 64.5
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 1.9e-53 213.0 123 79.7
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 4.9e-49 198.4 129 69.8
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.1e-48 197.2 129 69.0
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 9.2e-48 194.1 124 74.2
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 1.4e-43 180.3 125 66.4
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 3.4e-42 175.6 176 48.9
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.7e-41 173.3 125 64.8
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.9e-37 159.8 110 66.4
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 7.3e-37 157.9 98 74.5
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 9.5e-37 157.5 172 48.8
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 2.3e-35 152.9 171 46.8
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.2e-35 151.8 113 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 1.3e-33 147.1 175 45.1
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 2.4e-32 142.9 181 45.9
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.1e-32 142.1 113 63.7
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.4e-32 141.7 113 63.7
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 7.1e-32 141.4 113 63.7
BcaC09g50518 Brassica carinata HOM05D005733 ORTHO05D007442 7.1e-32 141.4 152 50.0
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 7.3e-29 131.3 79 74.7
Dinv41304 Davidia involucrata HOM05D005733 ORTHO05D007442 2.4e-27 126.3 84 70.2
FAN07G2740 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.2e-26 124.0 87 64.4
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 9.9e-26 120.9 83 65.1
Os08g0260000 Oryza sativa ssp. japonica HOM05D005733 ORTHO05D007442 6.0e-23 111.7 83 60.2
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 3.9e-22 109.0 192 34.9
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 5.3e-19 98.6 124 44.4
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 5.3e-19 98.6 124 44.4
BolC2t09466H Brassica oleracea HOM05D005733 ORTHO05D007442 7.6e-18 94.7 131 45.0
arahy.Tifrunner.gnm1.ann1.IUS3AS Arachis hypogaea HOM05D005733 ORTHO05D007442 9.9e-18 94.4 74 59.5
C02p34360 Brassica napus HOM05D005733 ORTHO05D007442 2.2e-17 93.2 131 44.3
arahy.Tifrunner.gnm1.ann1.65BVJ7 Arachis hypogaea HOM05D005733 ORTHO05D007442 3.8e-17 92.4 87 54.0
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 1.9e-16 90.1 119 47.1
Hund26406 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.0e-14 84.3 84 51.2
Haze_22164 Corylus avellana HOM05D005733 ORTHO05D007442 5.1e-14 82.0 52 69.2
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 6.7e-14 81.6 82 50.0
AL1G53920 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 1.5e-13 80.5 137 36.5
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 9.6e-13 77.8 154 33.1
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 2.1e-12 76.6 162 32.7
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.6e-12 75.9 63 54.0
MCO13G231 Micromonas commoda HOM05D005733 ORTHO05D006928 7.6e-10 68.2 102 34.3
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.3e-09 67.4 161 31.7
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 8.4e-09 64.7 161 29.8
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 1.1e-08 64.3 161 29.8
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.9e-08 63.5 158 31.0
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 3.2e-08 62.8 167 29.9
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 4.2e-08 62.4 162 32.1
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 5.5e-08 62.0 158 33.5
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.5e-08 62.0 156 31.4
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.6e-07 60.5 162 28.4
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 2.1e-07 60.1 164 29.3
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 2.7e-07 59.7 160 27.5
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 4.6e-07 58.9 149 28.2
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 6.0e-07 58.5 33 75.8
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 7.9e-07 58.2 164 27.4
Rhsim01G0011300 Rhododendron simsii HOM05D005919 ORTHO05D007176 7.9e-07 58.2 48 52.1
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.0e-06 57.8 158 30.4
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.0e-06 57.8 156 30.1
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 1.0e-06 57.8 163 25.2
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 1.3e-06 57.4 160 29.4
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 1.3e-06 57.4 158 30.4
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 1.8e-06 57.0 164 29.9
arahy.Tifrunner.gnm1.ann1.00M671 Arachis hypogaea HOM05D005733 ORTHO05D007442 3.0e-06 56.2 38 63.2
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 3.0e-06 56.2 156 29.5
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 3.0e-06 56.2 161 29.8
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 3.9e-06 55.8 162 30.2
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 3.9e-06 55.8 154 29.9
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 5.1e-06 55.5 187 27.3
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 5.1e-06 55.5 157 30.6
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 6.7e-06 55.1 82 32.9
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 8.7e-06 54.7 167 28.1
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 8.7e-06 54.7 157 28.0
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 8.7e-06 54.7 166 26.5


User provided reference genes

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