Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g07747_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.5e-47 192.6 100 100.0
MBI16_g21186_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 2.4e-34 148.7 83 95.2
MBI10_g37694_MAGBIO Magnolia biondii HOM05D000618 ORTHO05D000454 1.4e-13 79.7 58 72.4
TAR374G0631 Trochodendron aralioides HOM05D000618 ORTHO05D000454 2.4e-13 79.0 57 70.2
Haze_14205 Corylus avellana HOM05D000618 ORTHO05D000454 4.0e-13 78.2 59 67.8
Nn3g18034 Nelumbo nucifera HOM05D000618 ORTHO05D000454 9.0e-13 77.0 65 63.1
Hma1.2p1_0500F.1_g166930 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 1.5e-12 76.3 57 68.4
Aqoxy3G00163 Aquilegia oxysepala HOM05D000618 ORTHO05D000454 2.0e-12 75.9 57 68.4
RcHm_v2.0_Chr3g0493641 Rosa chinensis HOM05D000618 ORTHO05D000454 2.0e-12 75.9 57 64.9
Ciclev10012424m.g Citrus clementina HOM05D000618 ORTHO05D000454 3.4e-12 75.1 57 64.9
Nn4g24061 Nelumbo nucifera HOM05D000618 ORTHO05D000454 3.4e-12 75.1 58 65.5
TAR629G1543 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.4e-12 75.1 57 68.4
GSVIVG01030910001 Vitis vinifera HOM05D000618 ORTHO05D000454 3.4e-12 75.1 59 67.8
Sabra17G0101100 Salix brachista HOM05D000618 ORTHO05D000454 4.5e-12 74.7 59 61.0
Potri.017G122300 Populus trichocarpa HOM05D000618 ORTHO05D000454 5.8e-12 74.3 58 65.5
Prupe.3G151200 Prunus persica HOM05D000618 ORTHO05D000454 5.8e-12 74.3 72 56.9
Manes.02G073300 Manihot esculenta HOM05D000618 ORTHO05D000454 1.0e-11 73.6 57 64.9
Duzib138G0428 Durio zibethinus HOM05D000618 ORTHO05D000454 1.7e-11 72.8 57 63.2
Thecc.04G124600 Theobroma cacao HOM05D000618 ORTHO05D000454 1.7e-11 72.8 57 64.9
QL02p049083 Quercus lobata HOM05D000618 ORTHO05D000454 2.9e-11 72.0 54 68.5
Sabra17G0103700 Salix brachista HOM05D000618 ORTHO05D000454 2.9e-11 72.0 57 61.4
GSVIVG01011789001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.9e-11 72.0 57 59.6
MD09G1259600 Malus domestica HOM05D000618 ORTHO05D000454 3.8e-11 71.6 57 63.2
ATR0326G063 Amborella trichopoda HOM05D000618 ORTHO05D000454 4.9e-11 71.2 59 59.3
CiPaw.03G066600 Carya illinoinensis HOM05D000618 ORTHO05D000454 4.9e-11 71.2 57 63.2
Duzib133G0075 Durio zibethinus HOM05D000618 ORTHO05D000454 4.9e-11 71.2 57 63.2
Duzib251G0073 Durio zibethinus HOM05D000618 ORTHO05D000454 6.5e-11 70.9 57 57.9
Potri.004G093500 Populus trichocarpa HOM05D000618 ORTHO05D000454 6.5e-11 70.9 58 67.2
vmacro18060 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 8.4e-11 70.5 64 51.6
Sabra04G0062600 Salix brachista HOM05D000618 ORTHO05D000454 1.1e-10 70.1 57 66.7
CiPaw.04G045300 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.4e-10 69.7 57 61.4
Rhsim08G0084600 Rhododendron simsii HOM05D000618 ORTHO05D000454 1.4e-10 69.7 66 53.0
TWI53G1055 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 2.5e-10 68.9 57 56.1
Hma1.2p1_0114F.1_g055220 Hydrangea macrophylla HOM05D000618 ORTHO05D000454 3.2e-10 68.6 59 59.3
RcHm_v2.0_Chr4g0440831 Rosa chinensis HOM05D000618 ORTHO05D000454 3.2e-10 68.6 56 58.9
Gohir.A07G075500 Gossypium hirsutum HOM05D000618 ORTHO05D000454 4.2e-10 68.2 57 56.1
Gohir.D07G080000 Gossypium hirsutum HOM05D000618 ORTHO05D000454 4.2e-10 68.2 57 56.1
Gorai.001G084900 Gossypium raimondii HOM05D000618 ORTHO05D000454 4.2e-10 68.2 57 56.1
Glyma.10G265800 Glycine max HOM05D000618 ORTHO05D000454 7.1e-10 67.4 62 50.0
Dinv09245 Davidia involucrata HOM05D000618 ORTHO05D000454 9.3e-10 67.0 56 60.7
Peaxi162Scf00205g00619 Petunia axillaris HOM05D000618 ORTHO05D000454 9.3e-10 67.0 60 58.3
CSS0013602 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.2e-09 66.6 61 55.7
CSS0019021 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.2e-09 66.6 68 51.5
CANSAT01G0907 Cannabis sativa HOM05D000618 ORTHO05D000454 1.2e-09 66.6 60 55.0
Phvul.007G036000 Phaseolus vulgaris HOM05D000618 ORTHO05D000454 1.2e-09 66.6 56 55.4
Sc15g0002470 Simmondsia chinensis HOM05D000618 ORTHO05D000454 1.2e-09 66.6 67 44.8
CSS0048312 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.6e-09 66.2 56 58.9
PGSC0003DMG400030557 Solanum tuberosum HOM05D000618 ORTHO05D000454 1.6e-09 66.2 83 42.2
CSS0013869 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 2.1e-09 65.9 61 54.1
CANSAT01G2396 Cannabis sativa HOM05D000618 ORTHO05D000454 2.1e-09 65.9 57 57.9
Dinv05884 Davidia involucrata HOM05D000618 ORTHO05D000454 2.7e-09 65.5 57 56.1
Dinv16192 Davidia involucrata HOM05D000618 ORTHO05D000454 2.7e-09 65.5 56 58.9
Lj4A180T58 Lonicera japonica HOM05D000618 ORTHO05D000454 2.7e-09 65.5 60 53.3
Prupe.1G321900 Prunus persica HOM05D000618 ORTHO05D000454 2.7e-09 65.5 54 57.4
AUR62023210 Chenopodium quinoa HOM05D000618 ORTHO05D000454 3.5e-09 65.1 66 53.0
Cc07_g08330 Coffea canephora HOM05D000618 ORTHO05D000454 3.5e-09 65.1 59 52.5
PGR119G1221 Punica granatum HOM05D000618 ORTHO05D000454 3.5e-09 65.1 59 54.2
TAR622G0383 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.5e-09 65.1 53 60.4
AUR62023256 Chenopodium quinoa HOM05D000618 ORTHO05D000454 4.6e-09 64.7 70 50.0
COL.COLO4_20447 Corchorus olitorius HOM05D000618 ORTHO05D000454 4.6e-09 64.7 57 50.9
Gohir.A03G123500 Gossypium hirsutum HOM05D000618 ORTHO05D000454 6.0e-09 64.3 59 50.8
Lalb_Chr02g0145551 Lupinus albus HOM05D000618 ORTHO05D000454 6.0e-09 64.3 56 58.9
vmacro05493 Vaccinium macrocarpon HOM05D000618 ORTHO05D000454 6.0e-09 64.3 57 54.4
QL01p002306 Quercus lobata HOM05D000618 ORTHO05D000454 1.0e-08 63.5 57 54.4
SGA_v2.0_scaffold49G18132 Striga asiatica HOM05D000618 ORTHO05D000454 1.0e-08 63.5 59 52.5
Cfa008575 Carpinus fangiana HOM05D000618 ORTHO05D000454 1.3e-08 63.2 54 55.6
Ca_11102_v3 Cicer arietinum L. HOM05D000618 ORTHO05D000454 1.3e-08 63.2 56 53.6
Hund16192 Selenicereus undatus HOM05D000618 ORTHO05D000454 1.3e-08 63.2 59 50.8
VMungo0720G0474 Vigna mungo HOM05D000618 ORTHO05D000454 1.3e-08 63.2 56 53.6
EL10Ac2g04511 Beta vulgaris HOM05D000618 ORTHO05D000454 2.3e-08 62.4 66 43.9
CSS0028440 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 2.3e-08 62.4 59 55.9
ClCG05G010750 Citrullus lanatus HOM05D000618 ORTHO05D000454 2.3e-08 62.4 68 51.5
Gohir.D01G100200 Gossypium hirsutum HOM05D000618 ORTHO05D000454 2.3e-08 62.4 57 47.4
Gohir.D02G146100 Gossypium hirsutum HOM05D000618 ORTHO05D000454 2.3e-08 62.4 58 50.0
Gorai.002G181200 Gossypium raimondii HOM05D000618 ORTHO05D000454 2.3e-08 62.4 57 47.4
Lj5g0026978 Lotus japonicus HOM05D000618 ORTHO05D000454 2.3e-08 62.4 56 50.0
PSO832G1671 Papaver somniferum HOM05D000618 ORTHO05D000454 2.3e-08 62.4 54 59.3
Atru.chr11.366 Acer truncatum HOM05D000618 ORTHO05D000454 3.0e-08 62.0 52 53.8
Eucgr.G02211 Eucalyptus grandis HOM05D000618 ORTHO05D000454 3.0e-08 62.0 60 53.3
Glyma.20G124800 Glycine max HOM05D000618 ORTHO05D000454 3.0e-08 62.0 56 51.8
Medtr1g108490 Medicago truncatula HOM05D000618 ORTHO05D000454 3.0e-08 62.0 56 51.8
CSS0033385 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 3.9e-08 61.6 50 62.0
Nitab4.5_0004092g0050 Nicotiana tabacum HOM05D000618 ORTHO05D000454 3.9e-08 61.6 83 39.8
Nitab4.5_0004692g0020 Nicotiana tabacum HOM05D000618 ORTHO05D000454 3.9e-08 61.6 83 39.8
PGR042G3311 Punica granatum HOM05D000618 ORTHO05D000454 3.9e-08 61.6 59 54.2
SalBow3G3315 Salvia bowleyana HOM05D000618 ORTHO05D000454 3.9e-08 61.6 59 50.8
Sopen05g004220 Solanum pennellii HOM05D000618 ORTHO05D000454 3.9e-08 61.6 62 50.0
MSTRG.23606 Avicennia marina HOM05D000618 ORTHO05D000454 5.1e-08 61.2 61 50.8
CAN.G1693.9 Capsicum annuum HOM05D000618 ORTHO05D000454 5.1e-08 61.2 60 51.7
PSO210G0257 Papaver somniferum HOM05D000618 ORTHO05D000454 5.1e-08 61.2 55 58.2
Potri.010G115600 Populus trichocarpa HOM05D000618 ORTHO05D000454 5.1e-08 61.2 54 51.9
Sed0019063 Sechium edule HOM05D000618 ORTHO05D000454 5.1e-08 61.2 68 51.5
TPR.G4822 Trifolium pratense HOM05D000618 ORTHO05D000454 5.1e-08 61.2 56 53.6
Atru.chr1.1731 Acer truncatum HOM05D000618 ORTHO05D000454 6.7e-08 60.8 57 54.4
Atru.chr1.1741 Acer truncatum HOM05D000618 ORTHO05D000454 6.7e-08 60.8 57 54.4
Actinidia33609 Actinidia chinensis HOM05D000618 ORTHO05D000454 6.7e-08 60.8 56 51.8
Solyc05g008390.3 Solanum lycopersicum HOM05D000618 ORTHO05D000454 6.7e-08 60.8 62 50.0
CSS0013863 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 8.7e-08 60.5 50 60.0
CsaV3_3G017780 Cucumis sativus L. HOM05D000618 ORTHO05D000454 8.7e-08 60.5 61 52.5
CiPaw.05G247200 Carya illinoinensis HOM05D000618 ORTHO05D000454 1.1e-07 60.1 57 54.4
arahy.Tifrunner.gnm1.ann1.DXKJ1C Arachis hypogaea HOM05D000618 ORTHO05D000454 1.5e-07 59.7 56 51.8
arahy.Tifrunner.gnm1.ann1.QGG2CX Arachis hypogaea HOM05D000618 ORTHO05D000454 1.5e-07 59.7 56 51.8
Ciclev10016251m.g Citrus clementina HOM05D000618 ORTHO05D000454 1.5e-07 59.7 59 47.5
Gohir.A01G153800 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.9e-07 59.3 57 45.6
Gohir.D07G182600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 1.9e-07 59.3 64 51.6
Lj6A749G48 Lonicera japonica HOM05D000618 ORTHO05D000454 1.9e-07 59.3 60 51.7
Oeu044329.1 Olea europaea HOM05D000618 ORTHO05D000454 1.9e-07 59.3 56 58.9
Peaxi162Scf00119g01526 Petunia axillaris HOM05D000618 ORTHO05D000454 1.9e-07 59.3 67 43.3
TWI79G0217 Tripterygium wilfordii HOM05D000618 ORTHO05D000454 1.9e-07 59.3 56 53.6
Gorai.001G203200 Gossypium raimondii HOM05D000618 ORTHO05D000454 2.5e-07 58.9 57 56.1
Nitab4.5_0001648g0060 Nicotiana tabacum HOM05D000618 ORTHO05D000454 2.5e-07 58.9 68 44.1
SalBow3G2204 Salvia bowleyana HOM05D000618 ORTHO05D000454 2.5e-07 58.9 59 49.2
Migut.L00482 Erythranthe guttata HOM05D000618 ORTHO05D000454 3.3e-07 58.5 59 54.2
HanXRQChr08g0212871 Helianthus annuus HOM05D000618 ORTHO05D000454 3.3e-07 58.5 54 55.6
Gohir.A07G175600 Gossypium hirsutum HOM05D000618 ORTHO05D000454 4.3e-07 58.2 57 56.1
HanXRQChr09g0262401 Helianthus annuus HOM05D000618 ORTHO05D000454 4.3e-07 58.2 55 50.9
Migut.E00405 Erythranthe guttata HOM05D000618 ORTHO05D000454 5.7e-07 57.8 58 55.2
MD13G1028300 Malus domestica HOM05D000618 ORTHO05D000454 5.7e-07 57.8 57 50.9
Thecc.02G278100 Theobroma cacao HOM05D000618 ORTHO05D000454 5.7e-07 57.8 57 45.6
MSTRG.2192 Avicennia marina HOM05D000618 ORTHO05D000454 7.4e-07 57.4 56 53.6
ECA232G0339 Erigeron canadensis HOM05D000618 ORTHO05D000454 9.6e-07 57.0 74 43.2
Lalb_Chr21g0308521 Lupinus albus HOM05D000618 ORTHO05D000454 9.6e-07 57.0 56 53.6
MD16G1031200 Malus domestica HOM05D000618 ORTHO05D000454 9.6e-07 57.0 84 40.5
Rhsim09G0068500 Rhododendron simsii HOM05D000618 ORTHO05D000454 9.6e-07 57.0 79 45.6
SEGI_39058 Sequoiadendron giganteum HOM05D000618 ORTHO05D000454 9.6e-07 57.0 59 50.8
Cpa.g.sc65.110 Carica papaya HOM05D000618 ORTHO05D000454 1.3e-06 56.6 55 49.1
DCAR_026762 Daucus carota HOM05D000618 ORTHO05D000454 1.3e-06 56.6 68 47.1
Sabra10G0085500 Salix brachista HOM05D000618 ORTHO05D000454 1.3e-06 56.6 57 45.6
Sabra10G0087200 Salix brachista HOM05D000618 ORTHO05D000454 1.3e-06 56.6 57 45.6
SGA_v2.0_scaffold14G06930 Striga asiatica HOM05D000618 ORTHO05D000454 1.3e-06 56.6 80 42.5
CSS0013375 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.6e-06 56.2 51 54.9
CSS0038889 Camellia sinensis var. sinensis HOM05D000618 ORTHO05D000454 1.6e-06 56.2 51 54.9
Migut.H00257 Erythranthe guttata HOM05D000618 ORTHO05D000454 1.6e-06 56.2 64 51.6
FvH4_4g32130 Fragaria vesca HOM05D000618 ORTHO05D000454 1.6e-06 56.2 58 51.7
FAN07G2772 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.6e-06 56.2 58 51.7
FAN12G2757 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.6e-06 56.2 58 51.7
FAN22G2196 Fragaria x ananassa HOM05D000618 ORTHO05D000454 1.6e-06 56.2 58 51.7
PGSC0003DMG400005991 Solanum tuberosum HOM05D000618 ORTHO05D000454 1.6e-06 56.2 70 40.0
CiPaw.06G013700 Carya illinoinensis HOM05D000618 ORTHO05D000454 2.8e-06 55.5 50 56.0
Oeu047427.1 Olea europaea HOM05D000618 ORTHO05D000454 2.8e-06 55.5 55 49.1
Cc11_g09060 Coffea canephora HOM05D000618 ORTHO05D000454 3.7e-06 55.1 60 45.0
Sabra08G0096200 Salix brachista HOM05D000618 ORTHO05D000454 3.7e-06 55.1 52 48.1
Lsat_1_v5_gn_4_155240 Lactuca sativa HOM05D000618 ORTHO05D000454 4.8e-06 54.7 70 40.0
Os01g0121200 Oryza sativa ssp. japonica HOM05D000618 ORTHO05D000454 4.8e-06 54.7 52 55.8
ECA233G4941 Erigeron canadensis HOM05D000618 ORTHO05D000454 8.2e-06 53.9 56 51.8
Manes.06G062000 Manihot esculenta HOM05D000618 ORTHO05D000454 8.2e-06 53.9 59 47.5


User provided reference genes

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