Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 1.7e-44 182.2 88 100.0
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 6.1e-21 104.0 67 64.2
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 6.1e-21 104.0 67 64.2
Nn2g11160 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.8e-17 92.4 69 58.0
MBI05_g29695_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D000814 3.1e-17 91.7 60 65.0
Hma1.2p1_1785F.1_g302220 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.2e-16 89.7 68 58.8
Nn2g13398 Nelumbo nucifera HOM05D004372 ORTHO05D004331 1.5e-16 89.4 60 61.7
TAR623G0224 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.6e-16 88.6 58 63.8
Atru.chr12.419 Acer truncatum HOM05D004372 ORTHO05D004331 4.5e-16 87.8 69 55.1
Haze_17088 Corylus avellana HOM05D004372 ORTHO05D004331 5.9e-16 87.4 58 63.8
Cfa001453 Carpinus fangiana HOM05D004372 ORTHO05D004331 1.3e-15 86.3 64 57.8
Prupe.6G257600 Prunus persica HOM05D004372 ORTHO05D004331 2.9e-15 85.1 55 61.8
Carub.0006s0106 Capsella rubella HOM05D004372 ORTHO05D004331 1.9e-14 82.4 68 52.9
Lsat_1_v5_gn_8_15240 Lactuca sativa HOM05D004372 ORTHO05D004331 4.2e-14 81.3 65 55.4
CiPaw.01G289300 Carya illinoinensis HOM05D004372 ORTHO05D004331 7.2e-14 80.5 57 57.9
Haze_20817 Corylus avellana HOM05D004372 ORTHO05D004331 1.6e-13 79.3 61 55.7
FvH4_6g13440 Fragaria vesca HOM05D004372 ORTHO05D004331 1.6e-13 79.3 61 54.1
FAN14G0518 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.6e-13 79.3 61 54.1
Manes.07G117700 Manihot esculenta HOM05D004372 ORTHO05D004331 1.6e-13 79.3 60 55.0
THA.LOC109116790 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 1.6e-13 79.3 68 54.4
A10p33400 Brassica napus HOM05D004372 ORTHO05D004331 2.1e-13 79.0 65 49.2
BolC9t60164H Brassica oleracea HOM05D004372 ORTHO05D004331 2.1e-13 79.0 65 49.2
Cpa.g.c34680 Carica papaya HOM05D004372 ORTHO05D004331 2.7e-13 78.6 65 47.7
MD04G1131100 Malus domestica HOM05D004372 ORTHO05D004331 2.7e-13 78.6 55 56.4
FAN09G4335 Fragaria x ananassa HOM05D004372 ORTHO05D004331 3.6e-13 78.2 61 52.5
FAN02G2532 Fragaria x ananassa HOM05D004372 ORTHO05D004331 7.9e-13 77.0 61 50.8
Rhsim04G0158600 Rhododendron simsii HOM05D004372 ORTHO05D004331 1.0e-12 76.6 77 48.1
Hma1.2p1_0936F.1_g238880 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.4e-12 76.3 59 54.2
ClCG10G021220 Citrullus lanatus HOM05D004372 ORTHO05D004331 1.8e-12 75.9 68 52.9
Eucgr.J01238 Eucalyptus grandis HOM05D004372 ORTHO05D004331 2.3e-12 75.5 70 55.7
Gohir.D09G150300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 2.3e-12 75.5 59 55.9
Gorai.006G171600 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.3e-12 75.5 59 55.9
C09p74310 Brassica napus HOM05D004372 ORTHO05D004331 3.0e-12 75.1 65 47.7
Cfa017356 Carpinus fangiana HOM05D004372 ORTHO05D004331 3.0e-12 75.1 61 54.1
MD12G1144200 Malus domestica HOM05D004372 ORTHO05D004331 3.0e-12 75.1 55 58.2
RcHm_v2.0_Chr3g0466321 Rosa chinensis HOM05D004372 ORTHO05D004331 3.0e-12 75.1 61 52.5
HanXRQChr08g0220931 Helianthus annuus HOM05D004372 ORTHO05D004331 3.9e-12 74.7 56 60.7
Glyma.02G248800 Glycine max HOM05D004372 ORTHO05D004331 5.1e-12 74.3 61 57.4
Gohir.A05G094000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 5.1e-12 74.3 61 55.7
QL01p030934 Quercus lobata HOM05D004372 ORTHO05D004331 5.1e-12 74.3 69 50.7
MELO3C003142.2 Cucumis melo HOM05D004372 ORTHO05D004331 6.7e-12 73.9 54 57.4
Cpa.g.sc81.114 Carica papaya HOM05D004372 ORTHO05D004331 1.1e-11 73.2 66 51.5
FAN05G2794 Fragaria x ananassa HOM05D004372 ORTHO05D004331 1.1e-11 73.2 61 50.8
Hma1.2p1_1889F.1_g306650 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.1e-11 73.2 61 54.1
Hma1.2p1_2197F.1_g316913 Hydrangea macrophylla HOM05D004372 ORTHO05D004331 1.1e-11 73.2 61 54.1
Lsat_1_v5_gn_2_118420 Lactuca sativa HOM05D004372 ORTHO05D004331 1.1e-11 73.2 67 53.7
MD11G1097200 Malus domestica HOM05D004372 ORTHO05D004331 1.1e-11 73.2 69 53.6
Gohir.A09G154800 Gossypium hirsutum HOM05D004372 ORTHO05D004331 1.5e-11 72.8 59 54.2
Medtr5g080040 Medicago truncatula HOM05D004372 ORTHO05D004331 1.5e-11 72.8 58 56.9
Manes.10G028900 Manihot esculenta HOM05D004372 ORTHO05D004331 5.7e-11 70.9 61 54.1
BolC2t06039H Brassica oleracea HOM05D004372 ORTHO05D004331 7.4e-11 70.5 60 51.7
Duzib150G1613 Durio zibethinus HOM05D004372 ORTHO05D004331 7.4e-11 70.5 83 44.6
Thecc.09G318100 Theobroma cacao HOM05D004372 ORTHO05D004331 7.4e-11 70.5 84 45.2
CsaV3_4G025140 Cucumis sativus L. HOM05D004372 ORTHO05D004331 9.7e-11 70.1 54 53.7
HPP92_019243 Vanilla planifolia HOM05D004372 ORTHO05D004331 9.7e-11 70.1 62 51.6
Zm00001eb148250 Zea mays HOM05D004372 ORTHO05D004331 1.3e-10 69.7 56 57.1
BraA10t45371Z Brassica rapa HOM05D004372 ORTHO05D004331 1.7e-10 69.3 65 44.6
Os01g0843700 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 1.7e-10 69.3 56 57.1
ClCG07G003460 Citrullus lanatus HOM05D004372 ORTHO05D004331 2.2e-10 68.9 56 53.6
BraA02t04711Z Brassica rapa HOM05D004372 ORTHO05D004331 2.8e-10 68.6 54 53.7
Prupe.6G072300 Prunus persica HOM05D004372 ORTHO05D004331 2.8e-10 68.6 58 55.2
Sed0017148 Sechium edule HOM05D004372 ORTHO05D004331 2.8e-10 68.6 57 54.4
Actinidia05322 Actinidia chinensis HOM05D004372 ORTHO05D004331 3.7e-10 68.2 61 52.5
BcaNung06028 Brassica carinata HOM05D004372 ORTHO05D004331 3.7e-10 68.2 60 50.0
C02p00390 Brassica napus HOM05D004372 ORTHO05D004331 3.7e-10 68.2 60 50.0
CiPaw.09G194900 Carya illinoinensis HOM05D004372 ORTHO05D004331 3.7e-10 68.2 64 43.8
MD03G1088000 Malus domestica HOM05D004372 ORTHO05D004331 3.7e-10 68.2 70 51.4
Medtr5g080060 Medicago truncatula HOM05D004372 ORTHO05D004331 3.7e-10 68.2 60 53.3
CDE02G0964 Ceratophyllum demersum HOM05D000511 ORTHO05D000413 6.3e-10 67.4 77 46.8
COL.COLO4_14778 Corchorus olitorius HOM05D004372 ORTHO05D004331 6.3e-10 67.4 56 55.4
Manes.09G092400 Manihot esculenta HOM05D004372 ORTHO05D004331 6.3e-10 67.4 70 48.6
AL6G11450 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 8.2e-10 67.0 65 43.1
CANSAT11G2039 Cannabis sativa HOM05D004372 ORTHO05D004331 8.2e-10 67.0 55 47.3
CsaV3_5G008200 Cucumis sativus L. HOM05D004372 ORTHO05D004331 8.2e-10 67.0 54 53.7
AT5G02220 Arabidopsis thaliana HOM05D004372 ORTHO05D004331 1.4e-09 66.2 65 43.1
MELO3C023871.2 Cucumis melo HOM05D004372 ORTHO05D004331 1.4e-09 66.2 54 51.9
Gorai.012G104900 Gossypium raimondii HOM05D004372 ORTHO05D004331 1.8e-09 65.9 55 50.9
Gorai.009G097700 Gossypium raimondii HOM05D004372 ORTHO05D004331 2.4e-09 65.5 62 50.0
LjContig00141g0021725 Lotus japonicus HOM05D004372 ORTHO05D004331 2.4e-09 65.5 53 54.7
Sp6g40230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 2.4e-09 65.5 65 43.1
A10p06030 Brassica napus HOM05D004372 ORTHO05D004331 3.1e-09 65.1 51 54.9
BraA10t42865Z Brassica rapa HOM05D004372 ORTHO05D004331 3.1e-09 65.1 51 54.9
Gohir.D05G094500 Gossypium hirsutum HOM05D004372 ORTHO05D004331 4.1e-09 64.7 62 50.0
C05p05520 Brassica napus HOM05D004372 ORTHO05D004331 5.3e-09 64.3 51 54.9
BolC5t29323H Brassica oleracea HOM05D004372 ORTHO05D004331 5.3e-09 64.3 51 54.9
Thecc.05G037100 Theobroma cacao HOM05D004372 ORTHO05D004331 5.3e-09 64.3 58 48.3
BcaC05g24693 Brassica carinata HOM05D004372 ORTHO05D004331 9.1e-09 63.5 51 54.9
Glyma.14G067700 Glycine max HOM05D004372 ORTHO05D004331 9.1e-09 63.5 60 48.3
Gohir.D04G122000 Gossypium hirsutum HOM05D004372 ORTHO05D004331 9.1e-09 63.5 57 49.1
PGSC0003DMG400027224 Solanum tuberosum HOM05D004372 ORTHO05D004331 9.1e-09 63.5 60 50.0
CsaV3_3G034820 Cucumis sativus L. HOM05D004372 ORTHO05D004331 1.2e-08 63.2 68 44.1
Thhalv10015202m.g Eutrema salsugineum HOM05D004372 ORTHO05D004331 1.2e-08 63.2 67 40.3
Oeu026714.1 Olea europaea HOM05D004372 ORTHO05D004331 1.5e-08 62.8 71 45.1
AL8G23740 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.4e-08 61.6 64 46.9
Gohir.A04G083300 Gossypium hirsutum HOM05D004372 ORTHO05D004331 3.4e-08 61.6 57 47.4
Manes.02G130300 Manihot esculenta HOM05D004372 ORTHO05D004331 3.4e-08 61.6 58 53.4
BcaB02g06736 Brassica carinata HOM05D004372 ORTHO05D004331 4.5e-08 61.2 54 51.9
CARHR211160 Cardamine hirsuta HOM05D004372 ORTHO05D004331 4.5e-08 61.2 71 39.4
Phvul.008G231900 Phaseolus vulgaris HOM05D004372 ORTHO05D004331 5.9e-08 60.8 54 51.9
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 5.9e-08 60.8 87 39.1
Sc01g0004440 Simmondsia chinensis HOM05D004372 ORTHO05D004331 7.7e-08 60.5 55 52.7
Duzib106G0317 Durio zibethinus HOM05D004372 ORTHO05D004331 1.0e-07 60.1 60 45.0
Migut.F00765 Erythranthe guttata HOM05D004372 ORTHO05D004331 1.0e-07 60.1 54 46.3
Eucgr.K03114 Eucalyptus grandis HOM05D004372 ORTHO05D004331 1.0e-07 60.1 62 45.2
Lsat_1_v5_gn_5_169301 Lactuca sativa HOM05D004372 ORTHO05D004331 1.0e-07 60.1 66 39.4
Potri.016G100000 Populus trichocarpa HOM05D004372 ORTHO05D004331 1.0e-07 60.1 53 43.4
QL07p048809 Quercus lobata HOM05D004372 ORTHO05D004331 1.0e-07 60.1 60 45.0
Sp1g06230 Schrenkiella parvula HOM05D004372 ORTHO05D004331 1.0e-07 60.1 55 49.1
Sed0010480 Sechium edule HOM05D004372 ORTHO05D004331 1.0e-07 60.1 74 41.9
Peaxi162Scf00165g00075 Petunia axillaris HOM05D019299 ORTHO05D025949 1.7e-07 59.3 50 52.0
Carub.0001s0682 Capsella rubella HOM05D004372 ORTHO05D004331 2.2e-07 58.9 52 51.9
COL.COLO4_18555 Corchorus olitorius HOM05D004372 ORTHO05D004331 2.2e-07 58.9 58 50.0
Solyc05g053050.1 Solanum lycopersicum HOM05D004372 ORTHO05D004331 2.2e-07 58.9 60 48.3
THA.LOC109117276 Tarenaya hassleriana HOM05D004372 ORTHO05D004331 2.2e-07 58.9 87 35.6
Os03g0822400 Oryza sativa ssp. japonica HOM05D004372 ORTHO05D004331 2.9e-07 58.5 61 45.9
AL1G17680 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 3.8e-07 58.2 55 45.5
Aa31LG1G6940 Aethionema arabicum HOM05D004372 ORTHO05D004331 5.0e-07 57.8 69 43.5
EL10Ac7g16049 Beta vulgaris HOM05D004372 ORTHO05D004331 6.5e-07 57.4 56 46.4
AL3G43490 Arabidopsis lyrata HOM05D004372 ORTHO05D004331 8.5e-07 57.0 64 43.8
A08p35620 Brassica napus HOM05D004372 ORTHO05D004331 8.5e-07 57.0 55 49.1
BraA08t35468Z Brassica rapa HOM05D004372 ORTHO05D004331 8.5e-07 57.0 55 49.1
Cc01_g13170 Coffea canephora HOM05D004372 ORTHO05D004331 1.1e-06 56.6 63 42.9
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.1e-06 56.6 80 37.5
Ah.16g102460 Amaranthus hybridus HOM05D004372 ORTHO05D004331 1.4e-06 56.2 53 50.9
Nitab4.5_0001326g0030 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.4e-06 56.2 61 42.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.9e-06 55.8 68 36.8
CiPaw.13G091200 Carya illinoinensis HOM05D004372 ORTHO05D004331 1.9e-06 55.8 63 44.4
DCAR_007435 Daucus carota HOM05D004372 ORTHO05D004331 1.9e-06 55.8 52 50.0
Nitab4.5_0016190g0010 Nicotiana tabacum HOM05D004372 ORTHO05D004331 1.9e-06 55.8 70 41.4
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.9e-06 55.8 77 40.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.5e-06 55.5 62 43.5
CiPaw.15G088800 Carya illinoinensis HOM05D004372 ORTHO05D004331 2.5e-06 55.5 60 41.7
FAN16G1658 Fragaria x ananassa HOM05D023252 ORTHO05D025479 2.5e-06 55.5 81 39.5
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.5e-06 55.5 85 37.6
TWI74G0654 Tripterygium wilfordii HOM05D004372 ORTHO05D004331 2.5e-06 55.5 51 49.0
Rhsim01G0230700 Rhododendron simsii HOM05D004372 ORTHO05D004331 3.2e-06 55.1 59 49.2
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.2e-06 54.7 78 39.7
MELO3C009251.2 Cucumis melo HOM05D004372 ORTHO05D004331 4.2e-06 54.7 55 47.3
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 5.5e-06 54.3 75 40.0
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 5.5e-06 54.3 74 35.1
Aa31LG1G22520 Aethionema arabicum HOM05D004372 ORTHO05D004331 7.2e-06 53.9 48 47.9
BcaB03g13391 Brassica carinata HOM05D004372 ORTHO05D004331 7.2e-06 53.9 53 47.2


User provided reference genes

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