Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g00512_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D033891 1.5e-35 152.9 114 100.0
TAR633G1118 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.5e-19 99.0 112 75.9
Nn1g07555 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.8e-18 95.5 112 73.2
Peaxi162Scf00139g00112 Petunia axillaris HOM05D000001 ORTHO05D000003 4.8e-18 94.7 112 75.0
MD11G1035200 Malus domestica HOM05D000001 ORTHO05D000003 4.0e-17 91.7 112 73.2
COL.COLO4_07723 Corchorus olitorius HOM05D000001 ORTHO05D000003 5.3e-17 91.3 112 71.4
Hma1.2p1_0020F.1_g013920 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 5.3e-17 91.3 112 72.3
Solyc07g065730.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.3e-17 91.3 112 74.1
HPP92_012275 Vanilla planifolia HOM05D000001 ORTHO05D000003 6.9e-17 90.9 112 67.9
PGSC0003DMG400022163 Solanum tuberosum HOM05D000001 ORTHO05D000003 9.0e-17 90.5 112 73.2
Dinv44704 Davidia involucrata HOM05D000001 ORTHO05D000003 1.2e-16 90.1 112 74.1
Nitab4.5_0013922g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-16 90.1 112 72.3
Sabra16G0242700 Salix brachista HOM05D000001 ORTHO05D000003 1.5e-16 89.7 112 73.2
TWI38G1496 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.5e-16 89.7 112 73.2
CAN.G623.28 Capsicum annuum HOM05D000001 ORTHO05D000003 5.8e-16 87.8 112 71.4
Duzib213G0144 Durio zibethinus HOM05D000001 ORTHO05D000003 1.7e-15 86.3 112 58.0
Sopen07g033940 Solanum pennellii HOM05D000001 ORTHO05D000003 1.7e-15 86.3 112 71.4
PSO675G2218 Papaver somniferum HOM05D000001 ORTHO05D000003 2.2e-15 85.9 112 68.8
Haze_09849 Corylus avellana HOM05D000001 ORTHO05D000003 4.9e-15 84.7 112 72.3
ECA248G2493 Erigeron canadensis HOM05D000001 ORTHO05D000003 4.9e-15 84.7 112 71.4
Potri.001G369900 Populus trichocarpa HOM05D000001 ORTHO05D000003 8.4e-15 84.0 112 69.6
Thecc.07G009500 Theobroma cacao HOM05D000001 ORTHO05D000003 1.1e-14 83.6 112 57.1
Gorai.009G451200 Gossypium raimondii HOM05D000001 ORTHO05D000003 2.4e-14 82.4 112 55.4
Nitab4.5_0004583g0010 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.4e-14 82.4 112 70.5
QL08p003394 Quercus lobata HOM05D000001 ORTHO05D000003 2.4e-14 82.4 112 72.3
Gohir.D05G384400 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.2e-14 81.6 112 54.5
arahy.Tifrunner.gnm1.ann1.T6K2Y0 Arachis hypogaea HOM05D000001 ORTHO05D000003 5.4e-14 81.3 112 64.3
Gohir.A04G005300 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.4e-14 81.3 112 57.1
Cfa016919 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.3e-14 80.5 112 68.8
PGR031G0483 Punica granatum HOM05D000001 ORTHO05D000003 1.6e-13 79.7 112 57.1
Sed0005887 Sechium edule HOM05D000001 ORTHO05D000003 1.6e-13 79.7 112 64.3
Cc10_g14790 Coffea canephora HOM05D000001 ORTHO05D000003 2.1e-13 79.3 47 76.6
FAN16G2410 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.1e-13 79.3 112 70.5
ClCG09G021480 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.7e-13 79.0 112 65.2
FvH4_3g42650 Fragaria vesca HOM05D000001 ORTHO05D000003 4.6e-13 78.2 112 70.5
Lj1P892T36 Lonicera japonica HOM05D000001 ORTHO05D000003 4.6e-13 78.2 110 40.9
CsaV3_7G023920 Cucumis sativus L. HOM05D000001 ORTHO05D000003 6.0e-13 77.8 112 62.5
arahy.Tifrunner.gnm1.ann1.4U2AS3 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.0e-12 77.0 112 63.4
CiPaw.12G139800 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.0e-12 77.0 112 63.4
Ciclev10010822m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.0e-12 77.0 44 79.5
Prupe.6G026400 Prunus persica HOM05D000001 ORTHO05D000003 1.8e-12 76.3 112 68.8
Migut.I00204 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.3e-12 75.9 112 67.0
SalBow5G0879 Salvia bowleyana HOM05D000001 ORTHO05D000003 5.1e-12 74.7 112 65.2
RcHm_v2.0_Chr5g0076601 Rosa chinensis HOM05D000001 ORTHO05D000003 6.7e-12 74.3 112 65.2
GSVIVG01014727001 Vitis vinifera HOM05D000001 ORTHO05D000003 6.7e-12 74.3 47 76.6
MELO3C024960.2 Cucumis melo HOM05D000001 ORTHO05D000003 9.6e-11 70.5 111 32.4
Oeu057518.1 Olea europaea HOM05D000001 ORTHO05D000003 1.3e-10 70.1 44 68.2
RcHm_v2.0_Chr5g0076281 Rosa chinensis HOM05D000001 ORTHO05D000003 2.1e-10 69.3 112 68.8
HanXRQChr11g0336961 Helianthus annuus HOM05D000001 ORTHO05D000003 2.8e-10 68.9 112 66.1
Lsat_1_v5_gn_5_150361 Lactuca sativa HOM05D000001 ORTHO05D000003 3.6e-10 68.6 112 63.4
RcHm_v2.0_Chr6g0305561 Rosa chinensis HOM05D000001 ORTHO05D010146 8.1e-10 67.4 111 44.1
arahy.Tifrunner.gnm1.ann1.Q4IUW2 Arachis hypogaea HOM05D000001 ORTHO05D000003 2.0e-08 62.8 108 49.1
SGA_v2.0_scaffold25G10741 Striga asiatica HOM05D000001 ORTHO05D000003 2.0e-08 62.8 103 64.1
Nitab4.5_0005666g0010 Nicotiana tabacum HOM05D000001 ORTHO05D010146 2.6e-08 62.4 111 40.5
Sc16g0006110 Simmondsia chinensis HOM05D000001 ORTHO05D009857 4.5e-08 61.6 106 32.1
arahy.Tifrunner.gnm1.ann1.HT0TDU Arachis hypogaea HOM05D000001 ORTHO05D011690 5.8e-08 61.2 106 51.9
Lalb_Chr17g0337171 Lupinus albus HOM05D000001 ORTHO05D000003 5.8e-08 61.2 107 40.2
arahy.Tifrunner.gnm1.ann1.6EI7CH Arachis hypogaea HOM05D000001 ORTHO05D000003 9.9e-08 60.5 108 48.1
EL10Ac4g07814 Beta vulgaris HOM05D000001 ORTHO05D009857 9.9e-08 60.5 107 50.5
Lalb_Chr01g0008801 Lupinus albus HOM05D000001 ORTHO05D011690 9.9e-08 60.5 106 50.0
RcHm_v2.0_Chr6g0298171 Rosa chinensis HOM05D000001 ORTHO05D000003 1.3e-07 60.1 111 33.3
arahy.Tifrunner.gnm1.ann1.0TRX2Z Arachis hypogaea HOM05D000001 ORTHO05D011690 1.7e-07 59.7 106 51.9
TAR362G0594 Trochodendron aralioides HOM05D000001 ORTHO05D004269 1.7e-07 59.7 107 48.6
Actinidia04890 Actinidia chinensis HOM05D000001 ORTHO05D009806 2.9e-07 58.9 112 31.2
Cc02_g39710 Coffea canephora HOM05D000001 ORTHO05D004269 2.9e-07 58.9 112 50.0
CSS0015384 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D033891 3.8e-07 58.5 107 45.8
Ca_16279_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.8e-07 58.5 107 36.4
FAN16G1411 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.8e-07 58.5 111 32.4
MD15G1440600 Malus domestica HOM05D000001 ORTHO05D010749 4.9e-07 58.2 100 46.0
SMO119G0113 Selaginella moellendorffii HOM05D000001 ORTHO05D033891 4.9e-07 58.2 97 35.1
CANSAT78G0491 Cannabis sativa HOM05D000001 ORTHO05D010146 6.4e-07 57.8 113 46.9
TPR.G32036 Trifolium pratense HOM05D000001 ORTHO05D000003 6.4e-07 57.8 109 31.2
FvH4_2g29361 Fragaria vesca HOM05D000001 ORTHO05D000003 8.4e-07 57.4 111 31.5
FAN24G2781 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.4e-07 57.4 111 31.5
Medtr3g080230 Medicago truncatula HOM05D000001 ORTHO05D000003 8.4e-07 57.4 108 38.9
Prupe.1G582700 Prunus persica HOM05D000001 ORTHO05D010749 8.4e-07 57.4 106 58.5
SalBow1G6612 Salvia bowleyana HOM05D000001 ORTHO05D000003 8.4e-07 57.4 111 30.6
VMungo1383G3679 Vigna mungo HOM05D000001 ORTHO05D000003 8.4e-07 57.4 107 29.9
Actinidia13244 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.1e-06 57.0 111 33.3
Ca_10541_v3 Cicer arietinum L. HOM05D000001 ORTHO05D010228 1.1e-06 57.0 111 44.1
Nn3g19131 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.1e-06 57.0 109 30.3
Phvul.008G038800 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.1e-06 57.0 107 56.1
Ah.06g186320 Amaranthus hybridus HOM05D000001 ORTHO05D009857 1.4e-06 56.6 108 51.9
AUR62024605 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.4e-06 56.6 102 31.4
Actinidia31803 Actinidia chinensis HOM05D000001 ORTHO05D010013 1.9e-06 56.2 112 28.6
Ciclev10011174m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.9e-06 56.2 105 52.4
FAN15G0328 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-06 56.2 111 31.5
BcaC01g06416 Brassica carinata HOM05D000001 ORTHO05D009857 2.4e-06 55.8 113 49.6
C03p15860 Brassica napus HOM05D000001 ORTHO05D009857 2.4e-06 55.8 113 49.6
BolC3t14017H Brassica oleracea HOM05D000001 ORTHO05D009857 2.4e-06 55.8 113 49.6
Nitab4.5_0003553g0030 Nicotiana tabacum HOM05D000001 ORTHO05D009896 2.4e-06 55.8 99 34.3
SGA_v2.0_scaffold10G05432 Striga asiatica HOM05D000001 ORTHO05D010370 2.4e-06 55.8 111 54.1
GSVIVG01010647001 Vitis vinifera HOM05D000001 ORTHO05D010013 2.4e-06 55.8 112 30.4
Actinidia24327 Actinidia chinensis HOM05D000001 ORTHO05D009986 3.2e-06 55.5 100 32.0
Aa31LG6G3110 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.2e-06 55.5 111 28.8
Lalb_Chr23g0265301 Lupinus albus HOM05D000001 ORTHO05D000003 3.2e-06 55.5 86 37.2
Nn6g31867 Nelumbo nucifera HOM05D000001 ORTHO05D000003 3.2e-06 55.5 112 25.9
Phvul.008G230800 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 3.2e-06 55.5 96 29.2
TPR.G34501 Trifolium pratense HOM05D000001 ORTHO05D000003 3.2e-06 55.5 107 27.1
CANSAT78G1925 Cannabis sativa HOM05D000001 ORTHO05D010749 4.2e-06 55.1 103 54.4
Eucgr.C01762 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.2e-06 55.1 111 31.5
FAN03G0482 Fragaria x ananassa HOM05D000001 ORTHO05D010749 4.2e-06 55.1 106 46.2
Nn3g17249 Nelumbo nucifera HOM05D000001 ORTHO05D009806 4.2e-06 55.1 112 27.7
Phvul.001G051800 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 4.2e-06 55.1 110 30.0
Sed0012445 Sechium edule HOM05D000001 ORTHO05D010749 4.2e-06 55.1 106 58.5
THA.LOC104809753 Tarenaya hassleriana HOM05D000001 ORTHO05D007291 4.2e-06 55.1 116 30.2
HPP92_003182 Vanilla planifolia HOM05D000001 ORTHO05D000003 4.2e-06 55.1 109 32.1
CANSAT01G2728 Cannabis sativa HOM05D000001 ORTHO05D000003 5.5e-06 54.7 46 54.3
Glyma.05G008800 Glycine max HOM05D000001 ORTHO05D000003 5.5e-06 54.7 91 35.2
Glyma.13G141400 Glycine max HOM05D000001 ORTHO05D000003 5.5e-06 54.7 99 53.5
Gohir.A05G020200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 5.5e-06 54.7 98 33.7
Lj1g0006763 Lotus japonicus HOM05D000001 ORTHO05D000003 5.5e-06 54.7 107 53.3
Lalb_Chr04g0259091 Lupinus albus HOM05D000001 ORTHO05D009857 5.5e-06 54.7 106 28.3
MBI06_g47000_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010749 5.5e-06 54.7 105 57.1
Prupe.1G479200 Prunus persica HOM05D000001 ORTHO05D000003 5.5e-06 54.7 111 31.5
Sed0016527 Sechium edule HOM05D000001 ORTHO05D000003 5.5e-06 54.7 100 34.0
Solyc03g111210.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.5e-06 54.7 106 31.1
TPR.G15648 Trifolium pratense HOM05D000001 ORTHO05D000003 5.5e-06 54.7 110 30.0
A06p47470 Brassica napus HOM05D000001 ORTHO05D000003 7.1e-06 54.3 113 27.4
Cfa017472 Carpinus fangiana HOM05D000001 ORTHO05D009574 7.1e-06 54.3 111 29.7
ClCG01G023600 Citrullus lanatus HOM05D000001 ORTHO05D010749 7.1e-06 54.3 100 59.0
Migut.L01059 Erythranthe guttata HOM05D000001 ORTHO05D009584 7.1e-06 54.3 41 56.1
Eucgr.B00533 Eucalyptus grandis HOM05D000001 ORTHO05D010228 7.1e-06 54.3 97 59.8
Eucgr.B00560 Eucalyptus grandis HOM05D000001 ORTHO05D000003 7.1e-06 54.3 99 35.4
Manes.15G111400 Manihot esculenta HOM05D000001 ORTHO05D009857 7.1e-06 54.3 108 44.4
Os12g0270200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 7.1e-06 54.3 114 29.8
Peaxi162Scf00289g00011 Petunia axillaris HOM05D000001 ORTHO05D010146 7.1e-06 54.3 111 28.8
Peaxi162Scf36127g00002 Petunia axillaris HOM05D000001 ORTHO05D010146 7.1e-06 54.3 111 28.8
Potri.013G103600 Populus trichocarpa HOM05D000001 ORTHO05D000003 7.1e-06 54.3 107 30.8
Rhsim13G0013200 Rhododendron simsii HOM05D000001 ORTHO05D009986 7.1e-06 54.3 107 29.9
SalBow3G1695 Salvia bowleyana HOM05D000001 ORTHO05D000003 7.1e-06 54.3 106 31.1
Sc12g0002710 Simmondsia chinensis HOM05D000001 ORTHO05D009825 7.1e-06 54.3 111 28.8
Sc12g0003960 Simmondsia chinensis HOM05D000001 ORTHO05D009825 7.1e-06 54.3 111 28.8
Thecc.06G030500 Theobroma cacao HOM05D000001 ORTHO05D000003 7.1e-06 54.3 109 26.6
Thecc.08G185900 Theobroma cacao HOM05D000001 ORTHO05D000003 7.1e-06 54.3 100 53.0
BraA03t10661Z Brassica rapa HOM05D000001 ORTHO05D009857 9.3e-06 53.9 113 49.6
BraA06t27616Z Brassica rapa HOM05D000001 ORTHO05D000003 9.3e-06 53.9 113 27.4
CSS0018220 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 9.3e-06 53.9 107 31.8
MELO3C034624.2 Cucumis melo HOM05D000001 ORTHO05D000003 9.3e-06 53.9 107 29.9
Dinv43756 Davidia involucrata HOM05D000001 ORTHO05D000003 9.3e-06 53.9 110 26.4
FAN04G1443 Fragaria x ananassa HOM05D000001 ORTHO05D011242 9.3e-06 53.9 46 54.3
Glyma.18G262200 Glycine max HOM05D000001 ORTHO05D000003 9.3e-06 53.9 107 52.3
Gohir.A12G068000 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.3e-06 53.9 109 29.4
Lj5C276G4 Lonicera japonica HOM05D000001 ORTHO05D010749 9.3e-06 53.9 106 54.7
Lj7C720G6 Lonicera japonica HOM05D000001 ORTHO05D000003 9.3e-06 53.9 92 31.5
MBI04_g42208_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.3e-06 53.9 102 28.4
MBI04_g46760_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 9.3e-06 53.9 102 28.4
Nn5g27247 Nelumbo nucifera HOM05D000001 ORTHO05D000003 9.3e-06 53.9 109 31.2
PSO832G0307 Papaver somniferum HOM05D000001 ORTHO05D000003 9.3e-06 53.9 108 46.3
Peaxi162Scf00984g00022 Petunia axillaris HOM05D000001 ORTHO05D000003 9.3e-06 53.9 100 31.0
Psat5g110800 Pisum sativum HOM05D000001 ORTHO05D000003 9.3e-06 53.9 107 26.2
Rhsim02G0199300 Rhododendron simsii HOM05D000001 ORTHO05D000003 9.3e-06 53.9 92 32.6
RcHm_v2.0_Chr4g0400141 Rosa chinensis HOM05D000001 ORTHO05D000003 9.3e-06 53.9 97 35.1
Thecc.03G134000 Theobroma cacao HOM05D000001 ORTHO05D000003 9.3e-06 53.9 98 31.6
TWI59G0840 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.3e-06 53.9 105 32.4
TAR625G0475 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.3e-06 53.9 109 29.4
Zm00001eb431340 Zea mays HOM05D000001 ORTHO05D000003 9.3e-06 53.9 102 54.9


User provided reference genes

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