Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g44212_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.5e-71 272.7 134 100.0
MBI14_g41836_MAGBIO Magnolia biondii HOM05D005692 ORTHO05D006953 1.7e-54 216.1 99 99.0
Nn6g35447 Nelumbo nucifera HOM05D005692 ORTHO05D006953 1.0e-48 196.8 98 86.7
Nn8g38892 Nelumbo nucifera HOM05D005692 ORTHO05D006953 3.0e-48 195.3 98 86.7
CiPaw.03G217300 Carya illinoinensis HOM05D005692 ORTHO05D006953 1.2e-47 193.4 99 84.8
Dinv36757 Davidia involucrata HOM05D005692 ORTHO05D006953 2.8e-46 188.7 98 84.7
COL.COLO4_18212 Corchorus olitorius HOM05D005692 ORTHO05D006953 3.7e-46 188.3 97 83.5
Gohir.A02G019200 Gossypium hirsutum HOM05D005692 ORTHO05D006953 3.7e-46 188.3 98 81.6
HPP92_009139 Vanilla planifolia HOM05D005692 ORTHO05D006953 3.7e-46 188.3 102 76.5
Gohir.D02G022500 Gossypium hirsutum HOM05D005692 ORTHO05D006953 1.4e-45 186.4 98 80.6
Thecc.09G090700 Theobroma cacao HOM05D005692 ORTHO05D006953 1.4e-45 186.4 98 82.7
Duzib151G0847 Durio zibethinus HOM05D005692 ORTHO05D006953 3.1e-45 185.3 98 81.6
TAR626G0225 Trochodendron aralioides HOM05D005692 ORTHO05D006953 1.6e-44 183.0 98 81.6
Manes.03G032800 Manihot esculenta HOM05D005692 ORTHO05D006953 2.0e-44 182.6 98 79.6
CSS0005546 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 5.9e-44 181.0 98 77.6
CSS0025569 Camellia sinensis var. sinensis HOM05D005692 ORTHO05D006953 5.9e-44 181.0 98 77.6
Cfa003097 Carpinus fangiana HOM05D005692 ORTHO05D006953 5.9e-44 181.0 98 78.6
Gorai.005G027900 Gossypium raimondii HOM05D005692 ORTHO05D006953 1.0e-43 180.3 98 79.6
vmacro06285 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.3e-43 179.9 106 72.6
vmacro23428 Vaccinium macrocarpon HOM05D005692 ORTHO05D006953 1.3e-43 179.9 106 72.6
arahy.Tifrunner.gnm1.ann1.JM0M9B Arachis hypogaea HOM05D005692 ORTHO05D006953 8.6e-43 177.2 108 72.2
arahy.Tifrunner.gnm1.ann1.VY1HWT Arachis hypogaea HOM05D005692 ORTHO05D006953 8.6e-43 177.2 108 72.2
PGR102G3100 Punica granatum HOM05D005692 ORTHO05D006953 1.5e-42 176.4 99 74.7
MELO3C015461.2 Cucumis melo HOM05D005692 ORTHO05D006953 1.9e-42 176.0 92 81.5
Potri.012G001800 Populus trichocarpa HOM05D005692 ORTHO05D006953 1.9e-42 176.0 90 84.4
Sabra12G0019500 Salix brachista HOM05D005692 ORTHO05D006953 1.9e-42 176.0 90 84.4
Sabra12G0019700 Salix brachista HOM05D005692 ORTHO05D006953 1.9e-42 176.0 90 84.4
Rhsim03G0233100 Rhododendron simsii HOM05D005692 ORTHO05D006953 2.5e-42 175.6 95 78.9
Hund14283 Selenicereus undatus HOM05D005692 ORTHO05D006953 5.6e-42 174.5 94 79.8
Atru.BG.21.p Acer truncatum HOM05D005692 ORTHO05D006953 7.2e-42 174.1 89 83.1
CsaV3_1G040340 Cucumis sativus L. HOM05D005692 ORTHO05D006953 7.2e-42 174.1 92 79.3
Duzib187G1084 Durio zibethinus HOM05D005692 ORTHO05D006953 7.2e-42 174.1 98 76.5
Phvul.008G136000 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 7.2e-42 174.1 92 77.2
Cpa.g.sc20.158 Carica papaya HOM05D005692 ORTHO05D006953 9.5e-42 173.7 96 75.0
ATR0602G199 Amborella trichopoda HOM05D005692 ORTHO05D006953 1.2e-41 173.3 94 79.8
Phvul.005G056600 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 1.2e-41 173.3 92 76.1
ClCG03G015670 Citrullus lanatus HOM05D005692 ORTHO05D006953 2.1e-41 172.6 92 77.2
Ciclev10010392m.g Citrus clementina HOM05D005692 ORTHO05D006953 2.1e-41 172.6 101 73.3
Lj1g0023726 Lotus japonicus HOM05D005692 ORTHO05D006953 2.1e-41 172.6 95 75.8
PSO210G0626 Papaver somniferum HOM05D005692 ORTHO05D006953 2.8e-41 172.2 94 77.7
PSO210G2337 Papaver somniferum HOM05D005692 ORTHO05D006953 2.8e-41 172.2 94 77.7
Duzib187G0878 Durio zibethinus HOM05D005692 ORTHO05D006953 8.0e-41 170.6 98 76.5
Phvul.008G136200 Phaseolus vulgaris HOM05D005692 ORTHO05D006953 8.0e-41 170.6 92 76.1
Cc06_g11300 Coffea canephora HOM05D005692 ORTHO05D006953 1.0e-40 170.2 94 79.8
AUR62039390 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.4e-40 169.9 92 78.3
DCAR_011984 Daucus carota HOM05D005692 ORTHO05D006953 1.4e-40 169.9 92 75.0
Glyma.18G151700 Glycine max HOM05D005692 ORTHO05D006953 1.8e-40 169.5 98 74.5
Ah.09g223860 Amaranthus hybridus HOM05D005692 ORTHO05D006953 2.3e-40 169.1 92 77.2
TWI34G0948 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 2.3e-40 169.1 101 71.3
EL10Ac2g04637 Beta vulgaris HOM05D005692 ORTHO05D006953 3.0e-40 168.7 92 77.2
Glyma.08G343600 Glycine max HOM05D005692 ORTHO05D006953 3.0e-40 168.7 98 73.5
Oeu039606.1 Olea europaea HOM05D005692 ORTHO05D006953 3.0e-40 168.7 92 77.2
Sed0014309 Sechium edule HOM05D005692 ORTHO05D006953 3.0e-40 168.7 92 75.0
Atru.BG.266.p Acer truncatum HOM05D005692 ORTHO05D006953 4.0e-40 168.3 89 80.9
HanXRQChr10g0319271 Helianthus annuus HOM05D005692 ORTHO05D006953 5.2e-40 167.9 98 70.4
Sc14g0000750 Simmondsia chinensis HOM05D005692 ORTHO05D006953 5.2e-40 167.9 92 77.2
Migut.J00600 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.8e-40 167.5 94 74.5
Migut.J01065 Erythranthe guttata HOM05D005692 ORTHO05D006953 6.8e-40 167.5 94 74.5
Sopen12g003750 Solanum pennellii HOM05D005692 ORTHO05D006953 6.8e-40 167.5 94 73.4
Psat6g162800 Pisum sativum HOM05D005692 ORTHO05D006953 1.2e-39 166.8 92 75.0
Psat6g183720 Pisum sativum HOM05D005692 ORTHO05D006953 1.5e-39 166.4 92 75.0
Solyc12g008810.2 Solanum lycopersicum HOM05D005692 ORTHO05D006953 1.5e-39 166.4 94 72.3
PGSC0003DMG400000281 Solanum tuberosum HOM05D005692 ORTHO05D006953 1.5e-39 166.4 94 72.3
ECA234G3968 Erigeron canadensis HOM05D005692 ORTHO05D006953 2.0e-39 166.0 98 68.4
Lsat_1_v5_gn_5_145440 Lactuca sativa HOM05D005692 ORTHO05D006953 2.0e-39 166.0 98 69.4
THA.LOC104801884 Tarenaya hassleriana HOM05D005692 ORTHO05D006953 2.0e-39 166.0 97 73.2
Nitab4.5_0000540g0260 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.6e-39 165.6 94 71.3
Nitab4.5_0009931g0010 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.6e-39 165.6 94 71.3
Os05g0540200 Oryza sativa ssp. japonica HOM05D005692 ORTHO05D006953 2.6e-39 165.6 92 73.9
Lalb_Chr03g0041061 Lupinus albus HOM05D005692 ORTHO05D006953 4.4e-39 164.9 98 72.4
CAN.G1241.20 Capsicum annuum HOM05D005692 ORTHO05D006953 5.7e-39 164.5 94 71.3
Ca_07409_v3 Cicer arietinum L. HOM05D005692 ORTHO05D006953 7.5e-39 164.1 92 73.9
Prupe.7G211400 Prunus persica HOM05D005692 ORTHO05D006953 7.5e-39 164.1 98 70.4
Ah.10g037300 Amaranthus hybridus HOM05D005692 ORTHO05D006953 9.8e-39 163.7 92 75.0
HanXRQChr12g0354791 Helianthus annuus HOM05D005692 ORTHO05D006953 9.8e-39 163.7 98 69.4
Medtr7g051450 Medicago truncatula HOM05D005692 ORTHO05D006953 1.3e-38 163.3 90 74.4
Migut.H01159 Erythranthe guttata HOM05D005692 ORTHO05D006953 1.7e-38 162.9 94 71.3
Eucgr.C03889 Eucalyptus grandis HOM05D005692 ORTHO05D006953 1.7e-38 162.9 98 69.4
MD15G1205700 Malus domestica HOM05D005692 ORTHO05D006953 1.7e-38 162.9 92 72.8
Medtr7g021900 Medicago truncatula HOM05D005692 ORTHO05D006953 1.7e-38 162.9 90 74.4
MD02G1077000 Malus domestica HOM05D005692 ORTHO05D006953 2.9e-38 162.2 92 72.8
Peaxi162Scf00015g00716 Petunia axillaris HOM05D005692 ORTHO05D006953 2.9e-38 162.2 92 70.7
Aqoxy4G03142 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 3.7e-38 161.8 98 72.4
RcHm_v2.0_Chr2g0093151 Rosa chinensis HOM05D005692 ORTHO05D006953 3.7e-38 161.8 98 70.4
Migut.H00760 Erythranthe guttata HOM05D005692 ORTHO05D006953 4.9e-38 161.4 92 72.8
FvH4_1g07240 Fragaria vesca HOM05D005692 ORTHO05D006953 6.4e-38 161.0 98 70.4
FAN26G0193 Fragaria x ananassa HOM05D005692 ORTHO05D006953 6.4e-38 161.0 98 70.4
Psat6g183640 Pisum sativum HOM05D005692 ORTHO05D006953 6.4e-38 161.0 92 72.8
CANSAT78G0210 Cannabis sativa HOM05D005692 ORTHO05D006953 8.3e-38 160.6 94 69.1
Nitab4.5_0003152g0130 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.3e-38 160.6 94 70.2
Actinidia29885 Actinidia chinensis HOM05D003753 ORTHO05D005081 1.4e-37 159.8 90 74.4
TWI32G0831 Tripterygium wilfordii HOM05D005692 ORTHO05D006953 1.4e-37 159.8 95 69.5
GSVIVG01015215001 Vitis vinifera HOM05D005692 ORTHO05D006953 2.4e-37 159.1 99 69.7
VMungo1383G2743 Vigna mungo HOM05D005692 ORTHO05D006953 1.2e-36 156.8 114 62.3
AUR62033506 Chenopodium quinoa HOM05D005692 ORTHO05D006953 1.6e-36 156.4 112 63.4
FAN19G2784 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.6e-36 156.4 92 70.7
FAN23G0510 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.0e-36 156.0 91 70.3
FAN26G1568 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.0e-36 156.0 91 70.3
Psat6g183440 Pisum sativum HOM05D005692 ORTHO05D006953 2.0e-36 156.0 92 71.7
SGA_v2.0_scaffold62G21600 Striga asiatica HOM05D005692 ORTHO05D006953 7.8e-36 154.1 92 70.7
FAN19G0937 Fragaria x ananassa HOM05D005692 ORTHO05D006953 1.7e-35 152.9 88 70.5
SGA_v2.0_scaffold852G53671 Striga asiatica HOM05D005692 ORTHO05D006953 5.0e-35 151.4 92 69.6
FvH4_1g24820 Fragaria vesca HOM05D005692 ORTHO05D006953 1.1e-34 150.2 92 68.5
Nitab4.5_0003079g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 1.5e-34 149.8 82 73.2
BcaC09g51744 Brassica carinata HOM05D005692 ORTHO05D006953 3.3e-34 148.7 97 64.9
BcaC09g52211 Brassica carinata HOM05D005692 ORTHO05D006953 1.2e-33 146.7 91 67.0
A01p08470 Brassica napus HOM05D005692 ORTHO05D006953 1.2e-33 146.7 91 67.0
C01p09830 Brassica napus HOM05D005692 ORTHO05D006953 1.2e-33 146.7 91 67.0
BolC1t00945H Brassica oleracea HOM05D005692 ORTHO05D006953 1.2e-33 146.7 91 67.0
BraA01t00794Z Brassica rapa HOM05D005692 ORTHO05D006953 1.2e-33 146.7 91 67.0
CARHR237500 Cardamine hirsuta HOM05D005692 ORTHO05D006953 1.2e-33 146.7 93 66.7
SGA_v2.0_scaffold33G13431 Striga asiatica HOM05D005692 ORTHO05D006953 1.2e-33 146.7 96 66.7
Thhalv10026646m.g Eutrema salsugineum HOM05D005692 ORTHO05D006953 2.1e-33 146.0 93 65.6
unitig_748.g8121 Utricularia gibba HOM05D005692 ORTHO05D006953 2.1e-33 146.0 92 66.3
Aa31LG2G20910 Aethionema arabicum HOM05D005692 ORTHO05D006953 2.8e-33 145.6 93 64.5
AL7G22650 Arabidopsis lyrata HOM05D005692 ORTHO05D006953 2.8e-33 145.6 91 67.0
AT4G29660 Arabidopsis thaliana HOM05D005692 ORTHO05D006953 2.8e-33 145.6 91 67.0
Carub.0007s1086 Capsella rubella HOM05D005692 ORTHO05D006953 2.8e-33 145.6 91 67.0
Peaxi162Scf00354g00223 Petunia axillaris HOM05D005692 ORTHO05D006953 4.7e-33 144.8 94 66.0
Sp7g27450 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.0e-32 143.7 91 65.9
Sp3g29900 Schrenkiella parvula HOM05D005692 ORTHO05D006953 1.4e-32 143.3 91 67.0
CDE06G0459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 1.8e-32 142.9 74 81.1
SHI00379 Sapria himalayana HOM05D005692 ORTHO05D006953 1.8e-32 142.9 78 75.6
Nitab4.5_0000095g0140 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.6e-31 139.0 105 59.0
Nitab4.5_0008958g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 8.3e-30 134.0 78 73.1
CDE06G1459 Ceratophyllum demersum HOM05D005692 ORTHO05D006953 5.4e-29 131.3 74 78.4
Aqoxy1G00378 Aquilegia oxysepala HOM05D005692 ORTHO05D006953 2.0e-28 129.4 100 58.0
Nitab4.5_0004795g0020 Nicotiana tabacum HOM05D005692 ORTHO05D006953 2.7e-28 129.0 80 71.2
Peaxi162Scf00498g00124 Petunia axillaris HOM05D005692 ORTHO05D006953 2.3e-27 125.9 68 73.5
SHI21206 Sapria himalayana HOM05D005692 ORTHO05D006953 7.3e-26 120.9 63 76.2
TPR.G24304 Trifolium pratense HOM05D005692 ORTHO05D006953 7.5e-23 110.9 209 31.6
Psat0s10921g0080 Pisum sativum HOM05D005692 ORTHO05D006953 9.2e-21 104.0 61 73.8
SGA_v2.0_scaffold33G13433 Striga asiatica HOM05D000524 ORTHO05D000381 1.0e-19 100.5 61 72.1
FAN19G3189 Fragaria x ananassa HOM05D005692 ORTHO05D006953 2.1e-17 92.8 74 52.7
Mapoly0063s0096 Marchantia polymorpha HOM05D005692 ORTHO05D006953 3.6e-17 92.0 80 50.0
CBR_g36562 Chara braunii HOM05D005692 ORTHO05D006953 1.2e-15 87.0 70 52.9
Zm00001eb294300 Zea mays HOM05D005692 ORTHO05D006953 7.6e-15 84.3 61 59.0
Haze_25902 Corylus avellana HOM05D001256 ORTHO05D001141 5.4e-13 78.2 43 72.1
Pp3c13_20310 Physcomitrium patens HOM05D005692 ORTHO05D006953 1.4e-08 63.5 58 44.8


User provided reference genes

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