Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.6e-79 297.7 141 100.0
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.9e-37 159.5 77 93.5
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 2.5e-16 89.4 40 95.0
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.2e-16 88.6 40 95.0
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 6.7e-14 81.3 39 84.6
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 2.2e-12 76.3 38 78.9
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.3e-12 74.7 38 78.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 6.3e-12 74.7 38 78.9
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 6.3e-12 74.7 68 52.9
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.3e-12 74.7 40 75.0
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 6.3e-12 74.7 40 75.0
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 8.2e-12 74.3 38 76.3
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 8.2e-12 74.3 40 77.5
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.1e-11 73.9 37 75.7
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 1.4e-11 73.6 40 72.5
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 1.4e-11 73.6 38 71.1
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.8e-11 73.2 38 78.9
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 1.8e-11 73.2 74 45.9
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.4e-11 72.8 38 76.3
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.4e-11 72.8 39 74.4
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.0e-11 71.2 40 72.5
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.0e-11 71.2 40 72.5
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 9.1e-11 70.9 38 73.7
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 1.2e-10 70.5 36 77.8
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 1.6e-10 70.1 40 67.5
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 2.0e-10 69.7 38 73.7
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 3.5e-10 68.9 40 67.5
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 3.5e-10 68.9 40 67.5
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 3.5e-10 68.9 38 73.7
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 3.5e-10 68.9 38 73.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 3.5e-10 68.9 38 73.7
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 3.5e-10 68.9 38 76.3
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 3.5e-10 68.9 36 77.8
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 5.9e-10 68.2 38 71.1
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 7.7e-10 67.8 38 68.4
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 7.7e-10 67.8 39 66.7
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.0e-09 67.4 39 66.7
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 1.0e-09 67.4 38 68.4
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.3e-09 67.0 38 68.4
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.7e-09 66.6 39 66.7
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.9e-09 65.9 49 57.1
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 5.0e-09 65.1 38 65.8
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 5.0e-09 65.1 39 66.7
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 1.1e-08 63.9 38 68.4
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.1e-08 63.9 38 65.8
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.9e-08 63.2 38 68.4
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.9e-08 63.2 39 69.2
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 1.9e-08 63.2 38 65.8
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 2.5e-08 62.8 39 61.5
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 2.5e-08 62.8 38 65.8
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 2.5e-08 62.8 37 73.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.2e-08 62.4 40 62.5
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 4.2e-08 62.0 44 56.8
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 4.2e-08 62.0 44 56.8
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 5.5e-08 61.6 36 69.4
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 5.5e-08 61.6 36 63.9
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 5.5e-08 61.6 52 51.9
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 5.5e-08 61.6 40 60.0
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 5.5e-08 61.6 36 66.7
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 7.2e-08 61.2 37 70.3
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 7.2e-08 61.2 37 70.3
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 7.2e-08 61.2 37 70.3
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 9.4e-08 60.8 37 70.3
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.2e-07 60.5 36 69.4
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.1e-07 59.7 39 61.5
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.1e-07 59.7 39 61.5
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 2.1e-07 59.7 37 67.6
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 2.1e-07 59.7 39 59.0
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 4.7e-07 58.5 65 46.2
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 4.7e-07 58.5 65 46.2
MBI03_g12760_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-07 58.5 40 65.0
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 4.7e-07 58.5 37 64.9
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 6.1e-07 58.2 37 67.6
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 6.1e-07 58.2 34 70.6
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 8.0e-07 57.8 38 57.9
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 8.0e-07 57.8 40 57.5
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.0e-06 57.4 32 75.0
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.0e-06 57.4 38 60.5
MBI18_g30683_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-06 57.4 40 62.5
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.8e-06 56.6 36 69.4
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.8e-06 56.6 41 56.1
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 2.3e-06 56.2 39 59.0
MBI15_g29362_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000022 2.3e-06 56.2 40 60.0
MBI18_g26036_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-06 55.1 33 69.7
MBI01_g33694_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-06 54.7 39 59.0
MBI01_g40848_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-06 54.7 39 59.0
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 8.8e-06 54.3 37 64.9
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 8.8e-06 54.3 37 64.9
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 8.8e-06 54.3 37 64.9
MBI05_g28386_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.8e-06 54.3 40 57.5
MBI19_g06163_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 8.8e-06 54.3 40 60.0


User provided reference genes

Program Settings