Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.7e-140 501.9 240 100.0
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 6.0e-79 298.1 180 76.1
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.0e-78 295.8 177 74.6
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 3.0e-78 295.8 180 73.3
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 5.0e-78 295.0 184 75.0
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 5.0e-78 295.0 180 75.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 6.6e-78 294.7 183 73.2
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 7.3e-77 291.2 180 71.7
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 7.3e-77 291.2 180 71.7
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.6e-76 288.9 181 74.6
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 3.6e-76 288.9 181 74.6
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 3.6e-76 288.9 180 71.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 6.2e-76 288.1 176 72.7
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 8.1e-76 287.7 176 73.3
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.1e-75 287.3 176 72.7
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 1.1e-75 287.3 184 70.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.1e-75 285.8 183 71.6
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 4.0e-75 285.4 176 72.7
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.8e-75 284.6 180 71.7
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 6.8e-75 284.6 180 71.7
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 6.8e-75 284.6 180 70.0
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 8.9e-75 284.3 180 70.0
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.5e-74 283.5 180 70.0
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.0e-74 283.1 179 71.5
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 2.0e-74 283.1 180 70.6
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.0e-74 283.1 176 75.6
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.0e-74 283.1 176 75.6
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 3.4e-74 282.3 179 70.4
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 4.4e-74 282.0 180 70.6
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 4.4e-74 282.0 180 70.6
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.4e-74 282.0 177 75.1
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 7.5e-74 281.2 174 73.6
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 7.5e-74 281.2 177 70.6
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 9.8e-74 280.8 180 70.6
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.8e-74 280.8 180 70.6
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 9.8e-74 280.8 177 70.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 9.8e-74 280.8 177 74.0
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 1.7e-73 280.0 177 74.0
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 2.2e-73 279.6 180 70.6
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 2.2e-73 279.6 180 71.7
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.9e-73 279.3 180 71.7
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.4e-72 276.9 186 69.4
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 2.4e-72 276.2 176 70.5
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.4e-72 276.2 180 70.0
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 2.4e-72 276.2 180 68.9
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 4.1e-72 275.4 176 69.3
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 5.4e-72 275.0 176 69.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.4e-72 275.0 176 69.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 5.4e-72 275.0 176 69.9
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 7.1e-72 274.6 176 69.3
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 7.1e-72 274.6 178 69.7
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 9.2e-72 274.2 182 67.6
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 9.2e-72 274.2 176 69.3
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 1.2e-71 273.9 176 69.9
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.6e-71 273.5 176 70.5
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.6e-71 273.5 176 69.3
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.6e-71 273.5 176 69.3
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.6e-71 273.5 176 69.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 1.6e-71 273.5 180 68.9
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 1.6e-71 273.5 176 68.8
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.6e-71 273.5 175 70.9
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.7e-71 272.7 186 67.2
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 2.7e-71 272.7 183 67.2
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.7e-71 272.7 200 63.5
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 2.7e-71 272.7 192 65.6
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.7e-71 272.7 182 68.1
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 3.5e-71 272.3 177 71.2
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.6e-71 271.9 197 64.0
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 4.6e-71 271.9 175 69.1
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.0e-71 271.6 175 69.1
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 7.8e-71 271.2 180 67.8
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.0e-70 270.8 183 67.2
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 1.0e-70 270.8 183 67.2
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.3e-70 270.4 173 70.5
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-70 270.4 176 68.8
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.7e-70 270.0 176 68.2
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 1.7e-70 270.0 176 68.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.3e-70 269.6 181 67.4
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.9e-70 268.9 176 68.2
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 5.1e-70 268.5 182 68.1
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 6.6e-70 268.1 193 65.3
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.6e-70 267.7 176 68.2
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-69 267.3 176 68.2
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.9e-69 266.5 169 70.4
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 7.3e-69 264.6 176 66.5
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 9.5e-69 264.2 183 65.0
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-68 263.8 177 66.7
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 2.1e-68 263.1 169 70.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 2.1e-68 263.1 212 60.4
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.8e-68 262.7 176 66.5
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.8e-68 262.7 176 66.5
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.6e-68 262.3 202 61.9
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 8.1e-68 261.2 170 68.2
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.3e-67 259.6 177 68.4
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 2.0e-66 256.5 180 63.9
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 2.0e-66 256.5 180 63.9
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.7e-65 253.4 165 69.7
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 4.9e-65 251.9 163 70.6
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.1e-64 250.8 197 58.9
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.4e-64 249.6 162 69.1
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.0e-62 244.2 185 62.2
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 8.6e-62 241.1 151 72.8
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-61 240.4 176 66.5
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.5e-61 240.4 218 53.2
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-61 240.0 218 52.8
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 6.2e-60 235.0 151 68.9
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 6.2e-60 235.0 151 70.2
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.4e-59 233.8 179 62.0
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.8e-59 233.4 141 73.8
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.0e-58 229.9 146 68.5
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 3.4e-58 229.2 179 61.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 9.9e-58 227.6 267 45.3
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 3.8e-57 225.7 156 64.7
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 4.9e-57 225.3 147 68.0
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 4.9e-57 225.3 185 56.8
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 5.4e-56 221.9 138 71.0
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 2.7e-55 219.5 148 66.2
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.0e-54 217.6 173 56.1
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 2.3e-54 216.5 147 63.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 3.6e-52 209.1 144 66.0
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 3.4e-50 202.6 176 56.8
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 2.9e-49 199.5 181 50.8
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.5e-47 192.6 118 69.5
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.5e-47 192.6 170 48.8
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 3.5e-47 192.6 170 48.8
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 2.3e-46 189.9 118 66.9
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 2.5e-45 186.4 188 47.9
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 3.7e-44 182.6 173 52.6
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 3.7e-44 182.6 185 52.4
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 9.0e-43 177.9 161 55.3
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 9.9e-42 174.5 199 47.7
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 3.8e-41 172.6 200 41.5
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 6.4e-41 171.8 171 43.3
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.6e-39 167.2 193 39.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 8.7e-38 161.4 89 79.8
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.1e-36 156.8 92 76.1
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-34 150.6 88 73.9
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.5e-34 149.1 180 49.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.0e-33 147.9 141 49.6
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-31 139.8 141 51.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.4e-27 126.7 105 57.1
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 5.9e-26 122.1 97 55.7
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.7e-07 60.1 45 60.0
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.4e-06 57.8 40 67.5


User provided reference genes

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