Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g41011_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 4.2e-84 314.7 164 100.0
MBI06_g08458_MAGBIO Magnolia biondii HOM05D004310 ORTHO05D005403 1.7e-69 266.2 157 90.4
CDE10G1323 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 6.8e-42 174.5 154 68.2
TAR375G0608 Trochodendron aralioides HOM05D004310 ORTHO05D005403 2.6e-41 172.6 154 64.3
CDE10G0591 Ceratophyllum demersum HOM05D004310 ORTHO05D005403 1.3e-40 170.2 154 64.9
MELO3C022416.2 Cucumis melo HOM05D004310 ORTHO05D005403 1.3e-40 170.2 157 63.1
CsaV3_6G007120 Cucumis sativus L. HOM05D004310 ORTHO05D005403 2.2e-40 169.5 157 62.4
ClCG06G001190 Citrullus lanatus HOM05D004310 ORTHO05D005403 1.4e-39 166.8 156 62.2
ATR0213G003 Amborella trichopoda HOM05D004310 ORTHO05D005403 1.6e-38 163.3 152 61.8
Dinv35111 Davidia involucrata HOM05D004310 ORTHO05D005403 1.6e-38 163.3 157 61.1
Dinv32582 Davidia involucrata HOM05D004310 ORTHO05D005403 2.7e-38 162.5 157 61.1
Sed0010710 Sechium edule HOM05D004310 ORTHO05D005403 6.0e-38 161.4 157 59.9
Cfa003806 Carpinus fangiana HOM05D004310 ORTHO05D005403 1.0e-37 160.6 156 59.6
Haze_15649 Corylus avellana HOM05D004310 ORTHO05D005403 2.3e-37 159.5 156 59.6
PSO339G6050 Papaver somniferum HOM05D004310 ORTHO05D005403 1.5e-36 156.8 154 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4433 Anthoceros agrestis HOM05D004310 ORTHO05D005403 2.5e-36 156.0 152 59.2
Aqoxy7G00105 Aquilegia oxysepala HOM05D004310 ORTHO05D005403 9.5e-36 154.1 154 59.1
CiPaw.02G040300 Carya illinoinensis HOM05D004310 ORTHO05D005403 9.5e-36 154.1 158 58.2
Os01g0681600 Oryza sativa ssp. japonica HOM05D004310 ORTHO05D005403 9.5e-36 154.1 153 57.5
PSO384G0413 Papaver somniferum HOM05D004310 ORTHO05D005403 9.5e-36 154.1 155 60.6
Actinidia10134 Actinidia chinensis HOM05D004310 ORTHO05D005403 3.6e-35 152.1 156 57.7
QL04p061163 Quercus lobata HOM05D004310 ORTHO05D005403 3.6e-35 152.1 157 57.3
Lalb_Chr18g0044401 Lupinus albus HOM05D004310 ORTHO05D005403 4.7e-35 151.8 156 56.4
Glyma.19G255600 Glycine max HOM05D004310 ORTHO05D005403 6.2e-35 151.4 153 56.2
arahy.Tifrunner.gnm1.ann1.BIP3BJ Arachis hypogaea HOM05D004310 ORTHO05D005403 1.8e-34 149.8 154 55.8
Lalb_Chr04g0261561 Lupinus albus HOM05D004310 ORTHO05D005403 2.3e-34 149.4 158 55.7
Prupe.2G187300 Prunus persica HOM05D004310 ORTHO05D005403 3.1e-34 149.1 155 56.1
MD07G1148800 Malus domestica HOM05D004310 ORTHO05D005403 4.0e-34 148.7 152 57.9
vmacro13157 Vaccinium macrocarpon HOM05D004310 ORTHO05D005403 4.0e-34 148.7 150 56.0
arahy.Tifrunner.gnm1.ann1.Z66XJ9 Arachis hypogaea HOM05D004310 ORTHO05D005403 5.2e-34 148.3 154 55.2
Rhsim07G0004600 Rhododendron simsii HOM05D004310 ORTHO05D005403 8.9e-34 147.5 158 58.9
Zm00001eb360440 Zea mays HOM05D004310 ORTHO05D005403 1.5e-33 146.7 153 54.9
Zm00001eb156640 Zea mays HOM05D004310 ORTHO05D005403 2.6e-33 146.0 150 56.0
Glyma.03G257300 Glycine max HOM05D004310 ORTHO05D005403 3.4e-33 145.6 153 54.9
MD01G1080000 Malus domestica HOM05D004310 ORTHO05D005403 3.4e-33 145.6 155 58.7
Ca_09504_v3 Cicer arietinum L. HOM05D004310 ORTHO05D005403 5.8e-33 144.8 151 56.3
Mapoly0080s0014 Marchantia polymorpha HOM05D004310 ORTHO05D005403 5.8e-33 144.8 153 54.9
VMungo0540G1382 Vigna mungo HOM05D004310 ORTHO05D005403 5.8e-33 144.8 151 57.6
TWI59G1199 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 7.5e-33 144.4 156 55.8
Phvul.006G112400 Phaseolus vulgaris HOM05D004310 ORTHO05D005403 9.8e-33 144.1 153 56.2
TPR.G4733 Trifolium pratense HOM05D004310 ORTHO05D005403 9.8e-33 144.1 154 55.2
TWI14G0601 Tripterygium wilfordii HOM05D004310 ORTHO05D005403 1.3e-32 143.7 151 56.3
Lj1g0027458 Lotus japonicus HOM05D004310 ORTHO05D005403 1.7e-32 143.3 152 54.6
CSS0029608 Camellia sinensis var. sinensis HOM05D004310 ORTHO05D005403 4.9e-32 141.7 148 54.7
Psat3g002680 Pisum sativum HOM05D004310 ORTHO05D005403 1.4e-31 140.2 154 54.5
SGA_v2.0_scaffold43G16367 Striga asiatica HOM05D004310 ORTHO05D005403 1.9e-31 139.8 172 52.9
Manes.05G023500 Manihot esculenta HOM05D004310 ORTHO05D005403 2.4e-31 139.4 150 55.3
Pp3c22_11010 Physcomitrium patens HOM05D004310 ORTHO05D005403 2.4e-31 139.4 152 57.9
SalBow3G2754 Salvia bowleyana HOM05D004310 ORTHO05D005403 5.4e-31 138.3 185 49.7
Lsat_1_v5_gn_7_1281 Lactuca sativa HOM05D004310 ORTHO05D005403 7.0e-31 137.9 156 53.8
Medtr7g117320 Medicago truncatula HOM05D004310 ORTHO05D005403 7.0e-31 137.9 155 53.5
HanXRQChr06g0170681 Helianthus annuus HOM05D004310 ORTHO05D005403 9.2e-31 137.5 156 54.5
Ciclev10020037m.g Citrus clementina HOM05D004310 ORTHO05D005403 1.2e-30 137.1 153 54.9
Peaxi162Scf00786g00321 Petunia axillaris HOM05D004310 ORTHO05D005403 2.1e-30 136.3 157 57.3
Sabra02G0142100 Salix brachista HOM05D004310 ORTHO05D005403 2.7e-30 136.0 155 54.2
Cc02_g39270 Coffea canephora HOM05D004310 ORTHO05D005403 3.5e-30 135.6 172 53.5
Gohir.D08G146400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 6.0e-30 134.8 153 55.6
Sabra14G0071900 Salix brachista HOM05D004310 ORTHO05D005403 7.8e-30 134.4 153 55.6
Potri.002G170200 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.0e-29 134.0 155 53.5
CAN.G986.11 Capsicum annuum HOM05D004310 ORTHO05D005403 1.7e-29 133.3 156 55.8
Gorai.004G152000 Gossypium raimondii HOM05D004310 ORTHO05D005403 3.0e-29 132.5 153 54.9
Nn1g01876 Nelumbo nucifera HOM05D004310 ORTHO05D005403 3.0e-29 132.5 86 83.7
CANSAT56G1285 Cannabis sativa HOM05D004310 ORTHO05D005403 3.9e-29 132.1 153 54.2
DCAR_025250 Daucus carota HOM05D004310 ORTHO05D005403 3.9e-29 132.1 156 52.6
PGR042G3601 Punica granatum HOM05D004310 ORTHO05D005403 3.9e-29 132.1 154 53.9
Cpa.g.sc96.7 Carica papaya HOM05D004310 ORTHO05D005403 5.0e-29 131.7 152 54.6
Duzib138G0762 Durio zibethinus HOM05D004310 ORTHO05D005403 5.0e-29 131.7 153 54.2
Atru.chr5.660 Acer truncatum HOM05D004310 ORTHO05D005403 6.6e-29 131.3 153 53.6
Eucgr.D02370 Eucalyptus grandis HOM05D004310 ORTHO05D005403 8.6e-29 131.0 145 53.1
Sp1g00950 Schrenkiella parvula HOM05D004310 ORTHO05D005403 8.6e-29 131.0 163 50.3
THA.LOC104801375 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 8.6e-29 131.0 156 53.8
FvH4_7g16340 Fragaria vesca HOM05D004310 ORTHO05D005403 1.1e-28 130.6 152 52.6
FAN06G2059 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.1e-28 130.6 152 52.6
FAN10G0275 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.1e-28 130.6 152 52.6
FAN10G2670 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.1e-28 130.6 152 52.6
FAN01G1347 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-28 130.2 152 52.6
FAN03G3179 Fragaria x ananassa HOM05D004310 ORTHO05D005403 1.5e-28 130.2 152 52.6
PGSC0003DMG400000104 Solanum tuberosum HOM05D004310 ORTHO05D005403 1.5e-28 130.2 174 52.9
THA.LOC104817053 Tarenaya hassleriana HOM05D004310 ORTHO05D005403 1.5e-28 130.2 153 53.6
CBR_g29554 Chara braunii HOM05D004310 ORTHO05D005403 1.9e-28 129.8 171 49.7
Gohir.A08G125500 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.9e-28 129.8 153 54.2
Potri.014G098100 Populus trichocarpa HOM05D004310 ORTHO05D005403 1.9e-28 129.8 153 54.2
Sp6g01150 Schrenkiella parvula HOM05D004310 ORTHO05D005403 1.9e-28 129.8 158 50.6
Nitab4.5_0000838g0210 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.5e-28 129.4 150 55.3
Nitab4.5_0004999g0060 Nicotiana tabacum HOM05D004310 ORTHO05D005403 2.5e-28 129.4 147 55.8
COL.COLO4_06292 Corchorus olitorius HOM05D004310 ORTHO05D005403 4.3e-28 128.6 153 52.9
Duzib133G1258 Durio zibethinus HOM05D004310 ORTHO05D005403 5.6e-28 128.3 153 51.6
Lj7A501T50 Lonicera japonica HOM05D004310 ORTHO05D005403 5.6e-28 128.3 153 50.3
Sopen01g039540 Solanum pennellii HOM05D004310 ORTHO05D005403 7.3e-28 127.9 181 50.8
Sc01g0002750 Simmondsia chinensis HOM05D004310 ORTHO05D005403 9.5e-28 127.5 155 49.7
RcHm_v2.0_Chr1g0359351 Rosa chinensis HOM05D004310 ORTHO05D005403 1.2e-27 127.1 161 49.7
Thecc.01G343300 Theobroma cacao HOM05D004310 ORTHO05D005403 1.6e-27 126.7 153 53.6
Solyc01g095790.4 Solanum lycopersicum HOM05D004310 ORTHO05D005403 2.1e-27 126.3 174 51.1
Aa31LG5G960 Aethionema arabicum HOM05D004310 ORTHO05D005403 4.7e-27 125.2 158 51.3
Migut.N01550 Erythranthe guttata HOM05D004310 ORTHO05D005403 6.2e-27 124.8 168 48.8
Thhalv10028668m.g Eutrema salsugineum HOM05D004310 ORTHO05D005403 6.2e-27 124.8 158 50.0
MSTRG.17338 Avicennia marina HOM05D004310 ORTHO05D005403 8.1e-27 124.4 197 44.7
MSTRG.20902 Avicennia marina HOM05D004310 ORTHO05D005403 1.4e-26 123.6 197 44.2
Migut.O00903 Erythranthe guttata HOM05D004310 ORTHO05D005403 1.4e-26 123.6 168 48.2
A09p00270 Brassica napus HOM05D004310 ORTHO05D005403 2.3e-26 122.9 158 48.7
BraA03t12352Z Brassica rapa HOM05D004310 ORTHO05D005403 4.0e-26 122.1 158 48.7
Hund27201 Selenicereus undatus HOM05D004310 ORTHO05D005403 4.0e-26 122.1 152 52.6
A03p31750 Brassica napus HOM05D004310 ORTHO05D005403 6.8e-26 121.3 158 48.7
C03p38780 Brassica napus HOM05D004310 ORTHO05D005403 6.8e-26 121.3 158 48.7
BraA09t35754Z Brassica rapa HOM05D004310 ORTHO05D005403 8.9e-26 120.9 158 48.1
AUR62004485 Chenopodium quinoa HOM05D004310 ORTHO05D005403 8.9e-26 120.9 152 53.3
BcaB01g02305 Brassica carinata HOM05D004310 ORTHO05D005403 1.2e-25 120.6 158 49.4
AL6G52400 Arabidopsis lyrata HOM05D004310 ORTHO05D005403 1.5e-25 120.2 158 48.7
EL10Ac1g00277 Beta vulgaris HOM05D004310 ORTHO05D005403 1.5e-25 120.2 157 50.3
ECA236G2788 Erigeron canadensis HOM05D004310 ORTHO05D005403 1.5e-25 120.2 85 76.5
BcaC01g06834 Brassica carinata HOM05D004310 ORTHO05D005403 2.0e-25 119.8 158 48.1
Oeu004945.1 Olea europaea HOM05D004310 ORTHO05D005403 4.4e-25 118.6 86 76.7
Oeu008696.1 Olea europaea HOM05D004310 ORTHO05D005403 4.4e-25 118.6 149 53.0
Ah.05g179620 Amaranthus hybridus HOM05D004310 ORTHO05D005403 5.8e-25 118.2 152 52.6
unitig_62.g23796 Utricularia gibba HOM05D004310 ORTHO05D005403 5.8e-25 118.2 187 43.9
C09p00900 Brassica napus HOM05D004310 ORTHO05D005403 7.5e-25 117.9 158 48.7
Carub.0006s3602 Capsella rubella HOM05D004310 ORTHO05D005403 7.5e-25 117.9 158 47.5
SMO270G0076 Selaginella moellendorffii HOM05D004310 ORTHO05D005403 9.9e-25 117.5 150 49.3
BolC3t16153H Brassica oleracea HOM05D004310 ORTHO05D005403 1.3e-24 117.1 158 47.5
Gohir.D12G115400 Gossypium hirsutum HOM05D004310 ORTHO05D005403 1.3e-24 117.1 153 49.0
Gorai.008G124900 Gossypium raimondii HOM05D004310 ORTHO05D005403 1.3e-24 117.1 153 49.0
Aa31LG1G10680 Aethionema arabicum HOM05D004310 ORTHO05D005403 2.2e-24 116.3 115 61.7
Aa31sc508G10 Aethionema arabicum HOM05D004310 ORTHO05D005403 3.7e-24 115.5 153 46.4
BolC9t53025H Brassica oleracea HOM05D004310 ORTHO05D005403 6.4e-24 114.8 120 57.5
Cpa.g.sc148.40 Carica papaya HOM05D004310 ORTHO05D005403 7.1e-23 111.3 148 48.6
Eucgr.L00085 Eucalyptus grandis HOM05D004310 ORTHO05D005403 1.6e-22 110.2 139 50.4
AT4G01000 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 4.6e-22 108.6 158 44.9
CARHR249360 Cardamine hirsuta HOM05D004310 ORTHO05D005403 3.3e-20 102.4 158 43.7
Lsat_1_v5_gn_8_60321 Lactuca sativa HOM05D004310 ORTHO05D005403 3.4e-17 92.4 60 80.0
MCO02G408 Micromonas commoda HOM05D004310 ORTHO05D005403 3.5e-14 82.4 173 38.7
Actinidia20238 Actinidia chinensis HOM05D004310 ORTHO05D005403 2.2e-08 63.2 44 79.5
Cre07.g322100 Chlamydomonas reinhardtii HOM05D000218 ORTHO05D000125 4.9e-08 62.0 126 42.1
AT3G06455 Arabidopsis thaliana HOM05D004310 ORTHO05D005403 1.1e-07 60.8 157 33.8
arahy.Tifrunner.gnm1.ann1.FB4WK1 Arachis hypogaea HOM05D004310 ORTHO05D005403 3.2e-07 59.3 53 62.3
HPP92_024432 Vanilla planifolia HOM05D004310 ORTHO05D005403 7.1e-07 58.2 44 72.7


User provided reference genes

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