Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.5e-37 159.1 81 100.0
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 1.2e-26 122.9 75 78.7
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 3.4e-26 121.3 74 77.0
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.4e-26 120.9 79 73.4
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.7e-25 119.0 75 74.7
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.7e-25 119.0 75 78.7
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 4.9e-25 117.5 75 76.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 6.4e-25 117.1 75 73.3
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.2e-24 114.8 71 90.1
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.2e-24 114.8 74 73.0
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 3.2e-24 114.8 75 72.0
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 4.1e-24 114.4 73 74.0
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 5.4e-24 114.0 75 72.0
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 7.0e-24 113.6 75 72.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 7.0e-24 113.6 75 73.3
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 9.2e-24 113.2 73 74.0
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.2e-23 112.8 75 72.0
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.2e-23 112.8 75 74.7
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.6e-23 112.5 75 70.7
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.6e-23 112.5 75 72.0
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.6e-23 112.5 74 74.3
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.6e-23 112.5 74 71.6
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.0e-23 112.1 75 73.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 2.7e-23 111.7 73 71.2
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 2.7e-23 111.7 78 65.4
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 3.5e-23 111.3 75 70.7
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 4.6e-23 110.9 75 72.0
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.6e-23 110.9 75 70.7
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 5.9e-23 110.5 75 68.0
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 5.9e-23 110.5 75 68.0
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 7.8e-23 110.2 75 73.3
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 7.8e-23 110.2 75 66.7
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 7.8e-23 110.2 75 69.3
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.0e-22 109.8 73 69.9
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.3e-22 109.4 75 72.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-22 109.0 75 70.7
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-22 109.0 75 70.7
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.7e-22 109.0 76 71.1
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.7e-22 109.0 75 68.0
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 3.9e-22 107.8 75 72.0
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 6.6e-22 107.1 76 71.1
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 8.6e-22 106.7 76 64.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 8.6e-22 106.7 75 68.0
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 8.6e-22 106.7 75 66.7
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.1e-21 106.3 75 68.0
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.1e-21 106.3 76 69.7
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 1.5e-21 105.9 73 69.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 1.9e-21 105.5 75 66.7
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.5e-21 105.1 75 68.0
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 2.5e-21 105.1 75 64.0
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 2.5e-21 105.1 75 69.3
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 3.3e-21 104.8 75 65.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 3.3e-21 104.8 75 66.7
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 9.5e-21 103.2 72 66.7
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.2e-20 102.8 73 65.8
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.2e-20 102.8 74 64.9
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.7e-20 100.9 75 64.0
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 6.2e-20 100.5 75 66.7
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.1e-19 99.8 75 64.0
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 2.3e-19 98.6 75 64.0
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 2.3e-19 98.6 75 64.0
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.3e-19 98.6 75 58.7
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 2.3e-19 98.6 75 58.7
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 2.3e-19 98.6 75 61.3
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 4.0e-19 97.8 75 65.3
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 5.2e-19 97.4 75 61.3
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.2e-19 97.4 75 61.3
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 6.8e-19 97.1 102 52.9
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 8.9e-19 96.7 75 61.3
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.2e-18 96.3 75 61.3
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.5e-18 95.9 75 60.0
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.5e-18 95.9 74 59.5
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.0e-18 95.5 75 60.0
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 2.0e-18 95.5 75 61.3
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 2.0e-18 95.5 75 61.3
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 2.0e-18 95.5 75 64.0
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 2.6e-18 95.1 75 61.3
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 2.6e-18 95.1 75 61.3
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 3.4e-18 94.7 76 61.8
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.4e-18 94.7 75 60.0
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 3.4e-18 94.7 75 60.0
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 4.4e-18 94.4 76 61.8
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 5.8e-18 94.0 75 58.7
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 7.5e-18 93.6 75 61.3
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 7.5e-18 93.6 75 60.0
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 9.8e-18 93.2 75 61.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 9.8e-18 93.2 75 61.3
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 9.8e-18 93.2 75 61.3
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.7e-17 92.4 75 57.3
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 4.9e-17 90.9 75 60.0
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 4.9e-17 90.9 75 58.7
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 8.3e-17 90.1 75 60.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.4e-16 89.4 75 62.7
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.9e-16 89.0 75 57.3
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 7.0e-16 87.0 75 60.0
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 7.0e-16 87.0 75 54.7
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 2.0e-15 85.5 75 57.3
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 2.7e-15 85.1 75 57.3
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 4.6e-15 84.3 87 54.0
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.5e-13 78.6 75 53.3
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 3.3e-13 78.2 66 54.5
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 4.7e-12 74.3 157 33.1
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.7e-09 65.9 53 62.3
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 4.9e-09 64.3 50 64.0
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.1e-08 63.2 72 45.8
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 6.0e-07 57.4 76 44.7
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 3.0e-06 55.1 41 58.5
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 3.9e-06 54.7 34 67.6
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 8.6e-06 53.5 31 71.0
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 8.6e-06 53.5 44 56.8


User provided reference genes

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