Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 0.0e+00 2365.5 1232 100.0
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1222.6 1204 57.1
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1207.6 1256 55.1
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1190.6 1256 55.1
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1187.2 1261 54.2
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1183.7 1298 56.2
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1183.3 1262 54.2
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1182.9 1249 55.8
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1176.4 1197 55.2
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1176.0 1244 56.0
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1169.1 1242 55.0
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 0.0e+00 1168.7 1254 55.7
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1167.9 1244 55.1
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1164.4 1187 55.5
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1161.7 1211 54.3
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1161.4 1203 55.4
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1159.1 1201 55.2
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1157.9 1211 54.3
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1157.1 1203 55.2
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1155.6 1203 54.3
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1147.1 1190 54.6
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1144.4 1215 53.7
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1140.9 1189 54.8
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1140.2 1266 52.1
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1127.1 1255 52.0
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1124.4 1198 53.8
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1111.3 1195 53.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1109.7 1264 52.1
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1104.0 1195 52.6
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1097.8 1263 51.8
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1094.7 1262 50.7
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1092.0 1253 51.6
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1089.7 1242 53.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1086.6 1200 52.8
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1084.7 1201 53.0
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1083.6 1193 54.1
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1081.2 1199 52.5
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1080.5 1188 53.1
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1078.5 1080 56.2
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 8.4e-312 1073.5 1254 51.8
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 1.3e-310 1070.1 1198 52.5
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 2.4e-309 1065.8 1191 52.1
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 6.0e-308 1061.2 1203 52.3
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 8.6e-307 1057.4 1191 52.2
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 3.6e-305 1052.0 1182 52.5
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 4.7e-305 1051.6 1215 50.6
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 1.8e-304 1049.7 1185 52.7
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 3.1e-304 1048.9 1196 52.3
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 4.9e-302 1041.6 1315 49.1
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 1.1e-298 1030.4 1252 49.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 3.3e-298 1028.9 1217 50.9
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 2.8e-297 1025.8 1203 50.3
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 1.8e-296 1023.1 1253 49.7
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 8.9e-296 1020.8 1192 50.6
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 3.8e-294 1015.4 1198 50.4
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 1.2e-289 1000.3 1195 49.4
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 2.8e-289 999.2 1190 50.3
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 7.6e-287 991.1 1012 56.1
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 2.9e-286 989.2 1265 48.4
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 3.2e-285 985.7 1301 46.9
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 6.0e-284 981.5 1196 49.7
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.5e-282 976.9 1202 50.2
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 1.9e-282 976.5 1187 49.8
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 4.0e-280 968.8 1290 48.3
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 7.9e-276 954.5 1188 48.4
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 6.9e-272 941.4 1188 47.6
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 5.5e-269 931.8 1167 49.4
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 7.1e-269 931.4 1177 49.2
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 2.3e-267 926.4 1203 47.5
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 1.3e-265 920.6 1248 47.2
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 2.6e-263 912.9 1168 47.7
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 2.2e-262 909.8 1185 47.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 4.9e-262 908.7 1184 45.9
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 2.6e-255 886.3 1060 48.9
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 2.9e-254 882.9 1198 45.2
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 4.2e-253 879.0 1242 44.1
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 9.4e-253 877.9 1175 47.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 3.0e-251 872.8 1274 45.8
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 2.2e-249 866.7 1202 44.6
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 1.1e-248 864.4 1035 50.5
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 5.3e-248 862.1 1096 48.6
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 7.9e-244 848.2 1123 45.2
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 5.2e-235 818.9 1220 45.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 2.2e-233 813.5 799 58.8
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 4.4e-226 789.3 980 47.4
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 7.5e-210 735.3 759 54.9
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 1.2e-207 728.0 1032 42.8
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 2.6e-186 657.1 768 50.5
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 1.6e-175 621.3 1212 36.5
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 3.3e-157 560.5 1129 36.9
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 6.2e-148 529.6 615 47.6
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.2e-146 525.4 1167 33.8
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.3e-142 511.9 636 51.6
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.9e-141 508.1 1270 33.6
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 1.8e-99 368.6 383 54.0
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 9.8e-93 346.3 392 51.5
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.3e-89 335.9 495 43.6
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.4e-78 299.3 448 44.4
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 5.6e-64 250.8 1291 25.9
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 5.2e-62 244.2 380 40.5
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.1e-42 179.1 176 58.5
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 5.1e-33 147.9 86 77.9
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.0e-28 133.7 237 37.6
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.1e-24 120.2 272 34.9
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.1e-24 120.2 103 57.3
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 2.2e-23 115.9 83 63.9
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.5e-21 109.8 110 55.5
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 4.5e-21 108.2 76 65.8
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 2.2e-20 105.9 210 46.7
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 5.7e-16 91.3 68 63.2
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 7.4e-16 90.9 133 44.4
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 2.8e-15 89.0 127 43.3
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 5.3e-14 84.7 126 38.9
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 4.4e-08 65.1 82 48.8
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 6.3e-07 61.2 74 43.2
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 2.4e-06 59.3 139 28.8


User provided reference genes

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