Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g15311_MAGBIO Magnolia biondii HOM05D000255 ORTHO05D004531 6.4e-49 197.2 108 100.0
MBI08_g10501_MAGBIO Magnolia biondii HOM05D003967 ORTHO05D004531 2.5e-16 89.0 43 90.7
Medtr3g096350 Medicago truncatula HOM05D000255 ORTHO05D001116 2.5e-08 62.4 41 68.3
PSO170G4383 Papaver somniferum HOM05D000255 ORTHO05D001116 7.2e-08 60.8 41 68.3
PSO528G0023 Papaver somniferum HOM05D000255 ORTHO05D001116 7.2e-08 60.8 41 68.3
TWI34G0732 Tripterygium wilfordii HOM05D000255 ORTHO05D001116 7.2e-08 60.8 41 68.3
MBI03_g42545_MAGBIO Magnolia biondii HOM05D000255 ORTHO05D001116 9.4e-08 60.5 41 70.7
TPR.G28235 Trifolium pratense HOM05D000255 ORTHO05D001116 9.4e-08 60.5 41 65.9
TAR625G1527 Trochodendron aralioides HOM05D000255 ORTHO05D001116 9.4e-08 60.5 41 65.9
TAR628G1602 Trochodendron aralioides HOM05D000255 ORTHO05D001116 9.4e-08 60.5 41 68.3
Duzib093G0691 Durio zibethinus HOM05D000223 ORTHO05D001289 1.2e-07 60.1 41 63.4
ECA232G4043 Erigeron canadensis HOM05D000255 ORTHO05D001116 1.2e-07 60.1 41 65.9
HanXRQChr15g0484611 Helianthus annuus HOM05D000255 ORTHO05D001116 1.2e-07 60.1 41 65.9
Lj4C689T8 Lonicera japonica HOM05D000255 ORTHO05D001116 1.2e-07 60.1 41 65.9
Medtr8g093740 Medicago truncatula HOM05D000255 ORTHO05D001116 1.6e-07 59.7 41 68.3
arahy.Tifrunner.gnm1.ann1.F8268P Arachis hypogaea HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
arahy.Tifrunner.gnm1.ann1.KA6U9V Arachis hypogaea HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
EL10Ac6g15293 Beta vulgaris HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Cfa023060 Carpinus fangiana HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
CDE02G2183 Ceratophyllum demersum HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Ciclev10002473m.g Citrus clementina HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Glyma.05G191800 Glycine max HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Glyma.08G157000 Glycine max HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Manes.18G085300 Manihot esculenta HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Potri.002G074400 Populus trichocarpa HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
QL09p029466 Quercus lobata HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
TPR.G37417 Trifolium pratense HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
VMungo0251G3247 Vigna mungo HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
GSVIVG01009987001 Vitis vinifera HOM05D000255 ORTHO05D001116 2.1e-07 59.3 41 65.9
Dinv25785 Davidia involucrata HOM05D000255 ORTHO05D001116 2.7e-07 58.9 41 65.9
Lsat_1_v5_gn_4_135940 Lactuca sativa HOM05D000255 ORTHO05D001116 2.7e-07 58.9 41 63.4
Psat5g062120 Pisum sativum HOM05D000255 ORTHO05D001116 2.7e-07 58.9 41 63.4
HPP92_002014 Vanilla planifolia HOM05D000255 ORTHO05D001116 2.7e-07 58.9 41 65.9
Actinidia03438 Actinidia chinensis HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
MSTRG.24181 Avicennia marina HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
CAN.G657.8 Capsicum annuum HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Ca_16951_v3 Cicer arietinum L. HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 68.3
DCAR_014400 Daucus carota HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Dinv41145 Davidia involucrata HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
HanXRQChr05g0160451 Helianthus annuus HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Hma1.2p1_0107F.1_g051310 Hydrangea macrophylla HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Nitab4.5_0000174g0160 Nicotiana tabacum HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Nitab4.5_0014777g0010 Nicotiana tabacum HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Peaxi162Scf00066g01712 Petunia axillaris HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Rhsim11G0075300 Rhododendron simsii HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
SalBow6G0492 Salvia bowleyana HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Sed0006232 Sechium edule HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 65.9
Solyc04g064510.3 Solanum lycopersicum HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
Sopen04g026460 Solanum pennellii HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
vmacro00883 Vaccinium macrocarpon HOM05D000255 ORTHO05D001116 3.6e-07 58.5 41 63.4
ClCG08G003310 Citrullus lanatus HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 63.4
MELO3C011704.2 Cucumis melo HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 63.4
CsaV3_6G034540 Cucumis sativus L. HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 63.4
Eucgr.F02759 Eucalyptus grandis HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 65.9
Phvul.002G272200 Phaseolus vulgaris HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 65.9
Sabra07G0086300 Salix brachista HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 65.9
TAR381G0489 Trochodendron aralioides HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 65.9
Zm00001eb076640 Zea mays HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 63.4
Zm00001eb434560 Zea mays HOM05D000255 ORTHO05D001116 4.7e-07 58.2 41 63.4
Aa31LG6G9490 Aethionema arabicum HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
AL1G51970 Arabidopsis lyrata HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
AT1G43890 Arabidopsis thaliana HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BcaB07g33969 Brassica carinata HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BcaC05g27656 Brassica carinata HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
A05p21680 Brassica napus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
A08p07590 Brassica napus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
A10p07700 Brassica napus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
C05p36440 Brassica napus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BolC5t32373H Brassica oleracea HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BraA05t21090Z Brassica rapa HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BraA08t32775Z Brassica rapa HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
BraSC36t46035Z Brassica rapa HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Carub.0001s3482 Capsella rubella HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
CARHR035660 Cardamine hirsuta HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
CiPaw.15G023600 Carya illinoinensis HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
CiPaw.16G019000 Carya illinoinensis HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Duzib264G0802 Durio zibethinus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Thhalv10011775m.g Eutrema salsugineum HOM05D000255 ORTHO05D001116 6.1e-07 57.8 26 92.3
Lsat_1_v5_gn_6_97301 Lactuca sativa HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Lj4g0015238 Lotus japonicus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Lalb_Chr08g0238321 Lupinus albus HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 65.9
Nn1g06274 Nelumbo nucifera HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 61.0
Potri.007G105500 Populus trichocarpa HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 65.9
Sp1g33180 Schrenkiella parvula HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
THA.LOC104806841 Tarenaya hassleriana HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 63.4
Thecc.01G133300 Theobroma cacao HOM05D000255 ORTHO05D001116 6.1e-07 57.8 41 65.9
Atru.chr13.1651 Acer truncatum HOM05D000255 ORTHO05D001116 8.0e-07 57.4 39 69.2
Aqoxy6G00371 Aquilegia oxysepala HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 65.9
Cpa.g.sc42.161 Carica papaya HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Ciclev10002477m.g Citrus clementina HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Duzib187G1581 Durio zibethinus HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
MBI06_g27442_MAGBIO Magnolia biondii HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Manes.12G156300 Manihot esculenta HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Nn5g28533 Nelumbo nucifera HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Potri.005G063500 Populus trichocarpa HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
PGR044G0386 Punica granatum HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 61.0
QL10p043466 Quercus lobata HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
RcHm_v2.0_Chr6g0277801 Rosa chinensis HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
Sabra05G0052700 Salix brachista HOM05D000255 ORTHO05D001116 8.0e-07 57.4 41 63.4
MSTRG.20580 Avicennia marina HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
BcaB04g17756 Brassica carinata HOM05D000255 ORTHO05D001116 1.0e-06 57.0 39 64.1
BolC6t35170H Brassica oleracea HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
CSS0023420 Camellia sinensis var. sinensis HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
CSS0039405 Camellia sinensis var. sinensis HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
Ca_17635_v3 Cicer arietinum L. HOM05D007927 ORTHO05D010029 1.0e-06 57.0 41 63.4
ClCG02G000460 Citrullus lanatus HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
COL.COLO4_35481 Corchorus olitorius HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
MELO3C023233.2 Cucumis melo HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
Duzib116G0357 Durio zibethinus HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
Migut.N03248 Erythranthe guttata HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
FvH4_2g15140 Fragaria vesca HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
FAN15G3498 Fragaria x ananassa HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
FAN20G1657 Fragaria x ananassa HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
FAN24G3475 Fragaria x ananassa HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 63.4
Gohir.A02G068400 Gossypium hirsutum HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
Gohir.D02G074900 Gossypium hirsutum HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
Gorai.005G084300 Gossypium raimondii HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
Sc16g0003830 Simmondsia chinensis HOM05D000255 ORTHO05D001116 1.0e-06 57.0 26 88.5
PGSC0003DMG400024823 Solanum tuberosum HOM05D000255 ORTHO05D001116 1.0e-06 57.0 41 61.0
arahy.Tifrunner.gnm1.ann1.N5E9VC Arachis hypogaea HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 63.4
arahy.Tifrunner.gnm1.ann1.XGK89K Arachis hypogaea HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 63.4
BcaC08g42824 Brassica carinata HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 63.4
C06p00440 Brassica napus HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 63.4
Haze_25254 Corylus avellana HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 63.4
SGA_v2.0_scaffold19G08625 Striga asiatica HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 58.5
SGA_v2.0_scaffold25G11148 Striga asiatica HOM05D000255 ORTHO05D001116 1.4e-06 56.6 41 58.5
Atru.chr4.914 Acer truncatum HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 63.4
ATR0584G154 Amborella trichopoda HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 63.4
Gohir.A10G156500 Gossypium hirsutum HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 61.0
Gohir.D10G109100 Gossypium hirsutum HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 61.0
Gorai.011G119600 Gossypium raimondii HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 61.0
PGR042G1832 Punica granatum HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 61.0
TWI79G1372 Tripterygium wilfordii HOM05D000255 ORTHO05D001116 1.8e-06 56.2 41 61.0
Actinidia20073 Actinidia chinensis HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 63.4
CSS0004681 Camellia sinensis var. sinensis HOM05D000255 ORTHO05D001116 2.3e-06 55.8 26 84.6
CsaV3_2G019400 Cucumis sativus L. HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 63.4
Lalb_Chr11g0068491 Lupinus albus HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 63.4
Phvul.009G151300 Phaseolus vulgaris HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 63.4
Sed0002638 Sechium edule HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 63.4
Thecc.08G139300 Theobroma cacao HOM05D000255 ORTHO05D001116 2.3e-06 55.8 41 58.5
Aqoxy5G02325 Aquilegia oxysepala HOM05D000255 ORTHO05D001116 3.0e-06 55.5 41 58.5
Glyma.04G212400 Glycine max HOM05D000255 ORTHO05D001116 3.0e-06 55.5 41 61.0
MD05G1010800 Malus domestica HOM05D000255 ORTHO05D001116 4.0e-06 55.1 41 58.5
MD10G1009500 Malus domestica HOM05D000255 ORTHO05D001116 4.0e-06 55.1 41 58.5
Prupe.8G013500 Prunus persica HOM05D000255 ORTHO05D001116 5.2e-06 54.7 41 58.5
Medtr1g029450 Medicago truncatula HOM05D000255 ORTHO05D001116 6.7e-06 54.3 41 56.1
Psat6g039720 Pisum sativum HOM05D000255 ORTHO05D001116 6.7e-06 54.3 41 56.1
CANSAT01G0898 Cannabis sativa HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0
Cfa002902 Carpinus fangiana HOM05D007927 ORTHO05D001116 8.8e-06 53.9 45 55.6
CiPaw.04G081800 Carya illinoinensis HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0
MD00G1163000 Malus domestica HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0
MD01G1005500 Malus domestica HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0
Prupe.4G271600 Prunus persica HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0
RcHm_v2.0_Chr2g0121291 Rosa chinensis HOM05D000255 ORTHO05D001116 8.8e-06 53.9 41 61.0


User provided reference genes

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