Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 5.2e-159 564.3 279 100.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-102 377.1 244 75.4
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 2.6e-102 375.9 244 74.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.0e-99 364.8 231 75.8
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.5e-97 360.1 241 70.5
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.9e-97 359.8 225 76.4
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 3.3e-97 359.0 245 71.0
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 9.6e-97 357.5 244 68.9
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 9.6e-97 357.5 224 75.4
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 2.8e-96 355.9 224 75.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 6.2e-96 354.8 241 70.1
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.4e-95 353.6 241 69.7
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.8e-95 353.2 230 72.6
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.4e-95 352.8 225 75.1
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.2e-94 350.5 224 75.0
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 1.5e-94 350.1 227 73.1
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 2.0e-94 349.7 234 70.1
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.0e-94 349.7 225 72.9
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 3.4e-94 349.0 229 72.9
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 3.4e-94 349.0 229 71.6
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 4.5e-94 348.6 244 68.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 4.5e-94 348.6 243 69.1
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.0e-93 347.4 224 73.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.7e-93 346.7 246 67.5
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 2.2e-93 346.3 225 72.9
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 2.9e-93 345.9 244 68.4
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 6.5e-93 344.7 229 71.6
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 8.4e-93 344.4 225 72.4
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 8.4e-93 344.4 244 66.4
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.4e-92 343.6 244 68.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 2.5e-92 342.8 240 68.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 5.5e-92 341.7 232 70.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 5.5e-92 341.7 240 67.9
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 7.1e-92 341.3 222 74.8
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 7.1e-92 341.3 240 67.9
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 9.3e-92 340.9 229 69.4
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 9.3e-92 340.9 232 69.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 9.3e-92 340.9 229 71.6
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.5e-91 339.0 249 66.7
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 6.0e-91 338.2 244 66.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 6.0e-91 338.2 240 67.1
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 6.0e-91 338.2 267 62.9
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 1.3e-90 337.0 224 71.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 1.3e-90 337.0 231 69.3
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.8e-90 336.7 244 66.4
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 2.3e-90 336.3 228 70.6
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 6.7e-90 334.7 224 70.1
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 6.7e-90 334.7 224 69.6
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 8.7e-90 334.3 224 70.5
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 1.5e-89 333.6 228 67.5
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 1.9e-89 333.2 226 70.8
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.9e-89 333.2 229 69.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 2.5e-89 332.8 229 70.3
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 2.5e-89 332.8 244 64.8
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 3.3e-89 332.4 229 69.9
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 3.3e-89 332.4 234 68.8
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.4e-89 331.3 240 68.3
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 7.4e-89 331.3 224 71.0
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-89 331.3 224 71.0
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 7.4e-89 331.3 224 71.0
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 7.4e-89 331.3 224 71.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 7.4e-89 331.3 231 68.4
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 9.6e-89 330.9 224 71.0
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 9.6e-89 330.9 223 70.9
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 1.3e-88 330.5 224 70.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 2.8e-88 329.3 233 66.5
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 3.7e-88 328.9 224 68.8
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 3.7e-88 328.9 224 68.8
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.7e-88 328.9 228 66.7
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 3.7e-88 328.9 224 69.2
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 8.2e-88 327.8 228 66.2
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.1e-87 327.4 228 68.9
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.4e-87 326.2 225 68.9
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 5.9e-86 321.6 249 63.9
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 1.3e-85 320.5 225 70.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 6.5e-85 318.2 224 69.6
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 6.5e-85 318.2 225 68.4
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.5e-85 317.8 223 68.6
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 1.1e-84 317.4 248 60.1
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 2.5e-84 316.2 241 62.2
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 5.5e-84 315.1 279 59.1
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.2e-83 313.9 250 63.6
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.0e-82 309.3 241 61.4
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 8.7e-82 307.8 224 63.8
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.5e-81 306.2 222 67.6
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.7e-81 305.1 216 65.3
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 7.4e-81 304.7 277 58.5
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 8.2e-80 301.2 217 67.3
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 4.1e-79 298.9 214 67.3
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.1e-76 290.8 231 61.5
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 4.1e-71 272.3 230 60.0
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 6.9e-71 271.6 211 64.9
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 4.5e-70 268.9 195 66.7
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 4.5e-70 268.9 197 65.5
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 2.1e-67 260.0 190 69.5
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 4.7e-67 258.8 233 52.8
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.1e-65 254.2 231 54.1
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 2.0e-62 243.4 151 77.5
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 5.5e-60 235.3 175 67.4
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.7e-57 224.6 236 50.4
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 6.3e-56 221.9 236 49.2
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 2.4e-55 219.9 226 51.8
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.7e-51 206.5 155 66.5
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.2e-49 201.1 276 42.4
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 3.1e-47 193.0 139 66.9
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.3e-45 186.8 240 45.4
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 3.8e-45 186.0 128 68.8
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 5.0e-45 185.7 241 43.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 2.8e-43 179.9 243 40.7
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.0e-42 176.4 245 42.4
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 7.3e-36 155.2 210 45.7
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 1.7e-32 144.1 172 46.5
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 3.3e-28 129.8 262 32.8
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 6.2e-27 125.6 80 71.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.6e-22 110.9 105 57.1
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 8.9e-18 95.1 58 74.1
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 2.4e-15 87.0 53 73.6
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.2e-15 86.7 51 74.5
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 1.2e-11 74.7 63 57.1
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 1.8e-10 70.9 47 68.1
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 2.0e-09 67.4 50 64.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.3e-08 64.7 47 55.3
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 3.8e-08 63.2 210 25.2
ATR0745G056 Amborella trichopoda HOM05D004879 ORTHO05D065264 3.2e-07 60.1 39 59.0
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 2.1e-06 57.4 39 61.5
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 6.0e-06 55.8 39 61.5
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 7.8e-06 55.5 39 61.5
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 7.8e-06 55.5 38 65.8


User provided reference genes

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