Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 0.0e+00 1173.3 632 100.0
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 2.7e-272 941.8 684 77.5
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.3e-271 938.7 672 77.5
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.0e-271 938.3 683 76.6
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.3e-270 934.9 683 76.4
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.8e-269 931.8 669 77.4
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 3.1e-268 928.3 683 76.6
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 3.1e-268 928.3 674 76.3
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.1e-268 928.3 658 78.1
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.3e-266 922.9 658 78.0
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.8e-266 921.4 683 75.3
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 8.4e-266 920.2 684 76.0
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.5e-265 918.7 682 74.8
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 6.7e-263 910.6 679 75.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 8.7e-263 910.2 682 75.1
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.8e-261 905.2 676 74.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 3.7e-261 904.8 678 74.0
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.8e-261 904.4 678 74.8
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 8.2e-261 903.7 678 74.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.8e-260 902.5 679 74.4
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.4e-260 902.1 657 76.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.1e-260 901.7 679 74.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.5e-259 899.4 685 72.7
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.0e-259 899.0 678 73.7
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 5.5e-257 891.0 669 75.3
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.1e-256 889.0 711 71.3
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.1e-256 889.0 653 76.1
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 3.6e-256 888.3 748 68.0
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 4.6e-256 887.9 679 73.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 4.6e-256 887.9 748 68.0
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 7.9e-256 887.1 684 72.4
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 7.9e-256 887.1 676 74.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.0e-255 886.7 685 72.3
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.0e-255 886.7 676 73.7
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.3e-255 886.3 667 75.3
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.0e-255 885.2 682 73.5
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 3.9e-255 884.8 683 72.3
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.1e-254 883.2 678 72.6
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.3e-254 881.3 684 72.4
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 4.3e-254 881.3 683 72.6
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.1e-252 876.7 669 74.1
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 6.9e-252 874.0 682 72.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.9e-252 874.0 679 72.6
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 6.9e-252 874.0 683 72.6
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 9.1e-252 873.6 680 72.4
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.5e-251 872.8 691 71.5
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 2.0e-251 872.5 687 71.5
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 2.0e-251 872.5 642 74.9
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.6e-251 872.1 669 73.5
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 7.7e-251 870.5 686 71.1
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 7.7e-251 870.5 655 74.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 1.0e-250 870.2 682 72.4
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.9e-250 868.6 679 72.5
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 3.8e-250 868.2 681 72.4
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 5.0e-250 867.8 680 71.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 5.0e-250 867.8 680 71.8
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.5e-250 867.5 660 72.7
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 6.5e-250 867.5 682 72.3
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.4e-249 866.3 677 72.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.4e-249 866.3 685 71.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 4.2e-249 864.8 680 72.1
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 4.4e-246 854.7 676 72.8
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 5.7e-246 854.4 677 71.0
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 4.8e-245 851.3 667 73.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 3.1e-244 848.6 688 69.6
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.2e-243 846.7 660 73.3
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 5.9e-243 844.3 680 71.3
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 6.5e-242 840.9 690 69.0
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 7.2e-241 837.4 677 70.2
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 9.4e-241 837.0 678 70.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.1e-240 835.9 677 70.0
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.7e-240 835.5 672 71.0
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-239 833.6 725 66.6
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.0e-239 833.6 651 73.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.5e-238 829.7 681 69.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.0e-238 829.3 730 66.2
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.3e-238 828.6 676 69.8
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 4.4e-238 828.2 648 72.4
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.2e-235 820.1 637 73.2
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 3.5e-235 818.5 678 69.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 3.5e-235 818.5 678 69.0
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 5.9e-235 817.8 674 69.1
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 3.6e-232 808.5 675 68.4
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.8e-231 806.2 688 67.0
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-230 803.1 677 68.1
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.6e-230 802.4 713 65.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 5.7e-230 801.2 652 69.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 2.8e-229 798.9 662 69.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.8e-229 798.1 700 66.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 8.2e-229 797.3 683 66.8
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.2e-229 797.3 731 64.8
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.1e-228 797.0 683 66.6
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.4e-228 796.6 665 68.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.8e-228 796.2 654 67.3
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 9.1e-228 793.9 676 67.6
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 9.1e-228 793.9 676 67.6
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 2.0e-227 792.7 1032 50.3
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 5.0e-226 788.1 683 66.6
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.1e-225 786.9 708 65.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.1e-225 786.9 682 67.0
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 7.2e-225 784.3 573 77.3
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.0e-223 778.9 680 65.9
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.2e-222 776.9 652 69.3
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.6e-222 775.8 663 67.1
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.6e-222 775.8 685 66.4
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 7.5e-222 774.2 608 73.0
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 8.3e-221 770.8 622 71.7
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.3e-218 763.5 663 67.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.3e-218 763.5 681 66.1
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.9e-218 762.3 663 67.0
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.8e-216 755.7 677 65.3
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.4e-212 742.7 717 62.2
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.8e-199 699.9 677 61.4
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.9e-193 679.9 651 60.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.1e-191 674.1 702 58.7
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-191 673.7 652 60.7
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.8e-191 671.4 661 58.2
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 6.8e-183 644.8 550 68.7
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 1.9e-156 557.0 427 74.7
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.8e-152 543.1 401 76.6
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 5.1e-146 522.3 672 49.0
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.3e-122 443.7 366 67.2
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.2e-112 410.6 337 66.8
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 9.1e-111 405.2 559 47.6
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.4e-82 311.6 366 56.3
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.9e-80 303.9 272 66.2
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.4e-79 301.6 416 49.5
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 3.0e-77 293.9 422 49.1
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.1e-68 265.4 710 31.5
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 7.6e-57 226.1 729 33.5
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 4.2e-47 193.7 185 59.5
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.2e-46 192.2 123 79.7
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 5.1e-45 186.8 128 74.2
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.5e-44 184.5 156 65.4
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.1e-37 160.2 93 84.9
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.5e-36 158.7 263 46.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.9e-26 123.2 93 77.4
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 5.5e-23 113.6 664 24.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 7.4e-20 103.2 597 24.0
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.5e-17 95.5 69 71.0
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 6.7e-13 80.1 109 51.4
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.2e-11 75.1 203 38.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.7e-11 74.3 82 57.3
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 3.8e-08 64.3 59 66.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.9e-07 62.0 82 52.4


User provided reference genes

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