Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g09074_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 3.4e-78 295.0 162 100.0
Cfa010679 Carpinus fangiana HOM05D005425 ORTHO05D006686 3.7e-40 168.7 112 75.0
Haze_26083 Corylus avellana HOM05D005425 ORTHO05D006686 1.1e-39 167.2 112 75.0
COL.COLO4_21175 Corchorus olitorius HOM05D005425 ORTHO05D006686 3.1e-39 165.6 112 73.2
MD02G1106000 Malus domestica HOM05D005425 ORTHO05D006686 5.3e-39 164.9 114 73.7
Prupe.7G189100 Prunus persica HOM05D005425 ORTHO05D006686 6.9e-39 164.5 114 72.8
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 9.1e-39 164.1 112 74.1
GSVIVG01000275001 Vitis vinifera HOM05D005425 ORTHO05D006686 1.2e-38 163.7 107 76.6
Gorai.001G018900 Gossypium raimondii HOM05D005425 ORTHO05D006686 1.5e-38 163.3 112 71.4
Aqoxy6G03062 Aquilegia oxysepala HOM05D005425 ORTHO05D006686 2.6e-38 162.5 113 76.1
Gohir.A07G018500 Gossypium hirsutum HOM05D005425 ORTHO05D006686 3.4e-38 162.2 112 70.5
MD15G1225900 Malus domestica HOM05D005425 ORTHO05D006686 3.4e-38 162.2 111 73.9
PGR044G1074 Punica granatum HOM05D005425 ORTHO05D006686 3.4e-38 162.2 109 74.3
Dinv19577 Davidia involucrata HOM05D005425 ORTHO05D006686 4.5e-38 161.8 107 75.7
Duzib150G0231 Durio zibethinus HOM05D005425 ORTHO05D006686 4.5e-38 161.8 112 71.4
Lj4g0004112 Lotus japonicus HOM05D005425 ORTHO05D006686 4.5e-38 161.8 112 72.3
CiPaw.03G198700 Carya illinoinensis HOM05D005425 ORTHO05D006686 7.7e-38 161.0 111 72.1
Gohir.D07G018300 Gossypium hirsutum HOM05D005425 ORTHO05D006686 1.3e-37 160.2 112 70.5
ECA247G3713 Erigeron canadensis HOM05D005425 ORTHO05D006686 1.7e-37 159.8 111 71.2
MBI13_g05972_MAGBIO Magnolia biondii HOM05D005425 ORTHO05D006686 2.2e-37 159.5 116 72.4
arahy.Tifrunner.gnm1.ann1.I1NZHN Arachis hypogaea HOM05D005425 ORTHO05D006686 2.9e-37 159.1 114 69.3
Eucgr.C00752 Eucalyptus grandis HOM05D005425 ORTHO05D006686 2.9e-37 159.1 112 70.5
Thecc.09G067100 Theobroma cacao HOM05D005425 ORTHO05D006686 3.8e-37 158.7 112 69.6
TWI63G1799 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 3.8e-37 158.7 114 70.2
PSO675G8782 Papaver somniferum HOM05D005425 ORTHO05D006686 5.0e-37 158.3 111 70.3
Potri.006G217400 Populus trichocarpa HOM05D005425 ORTHO05D006686 5.0e-37 158.3 112 67.0
vmacro16402 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 6.5e-37 157.9 112 71.4
Lj4P729T25 Lonicera japonica HOM05D005425 ORTHO05D006686 8.5e-37 157.5 107 72.0
arahy.Tifrunner.gnm1.ann1.A16VYK Arachis hypogaea HOM05D005425 ORTHO05D006686 1.4e-36 156.8 114 68.4
Duzib168G1380 Durio zibethinus HOM05D005425 ORTHO05D006686 1.4e-36 156.8 112 69.6
Nn6g31504 Nelumbo nucifera HOM05D005425 ORTHO05D006686 1.4e-36 156.8 107 72.9
TPR.G12630 Trifolium pratense HOM05D005425 ORTHO05D006686 1.4e-36 156.8 112 71.4
Atru.chr7.1809 Acer truncatum HOM05D005425 ORTHO05D006686 1.9e-36 156.4 108 71.3
TWI34G0652 Tripterygium wilfordii HOM05D005425 ORTHO05D006686 1.9e-36 156.4 114 69.3
ATR0006G051 Amborella trichopoda HOM05D005425 ORTHO05D006686 2.5e-36 156.0 107 72.9
HPP92_002368 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.5e-36 156.0 111 71.2
HPP92_027595 Vanilla planifolia HOM05D005425 ORTHO05D006686 2.5e-36 156.0 111 71.2
AUR62017596 Chenopodium quinoa HOM05D005425 ORTHO05D006686 3.2e-36 155.6 112 70.5
Actinidia20626 Actinidia chinensis HOM05D005425 ORTHO05D006686 4.2e-36 155.2 107 74.8
Lalb_Chr12g0200431 Lupinus albus HOM05D005425 ORTHO05D006686 5.5e-36 154.8 107 72.0
VMungo1215G3244 Vigna mungo HOM05D005425 ORTHO05D006686 5.5e-36 154.8 112 69.6
Ca_21353_v3 Cicer arietinum L. HOM05D005425 ORTHO05D006686 7.2e-36 154.5 112 69.6
Ciclev10009195m.g Citrus clementina HOM05D005425 ORTHO05D006686 7.2e-36 154.5 104 72.1
Lalb_Chr07g0181511 Lupinus albus HOM05D005425 ORTHO05D006686 9.4e-36 154.1 107 70.1
HanXRQChr02g0040411 Helianthus annuus HOM05D005425 ORTHO05D006686 1.2e-35 153.7 111 66.7
AUR62015135 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.6e-35 153.3 112 68.8
PSO717G0103 Papaver somniferum HOM05D005425 ORTHO05D006686 1.6e-35 153.3 111 68.5
Glyma.17G043500 Glycine max HOM05D005425 ORTHO05D006686 4.7e-35 151.8 112 67.9
Phvul.003G125400 Phaseolus vulgaris HOM05D005425 ORTHO05D006686 4.7e-35 151.8 107 71.0
Lsat_1_v5_gn_1_2721 Lactuca sativa HOM05D005425 ORTHO05D006686 6.1e-35 151.4 111 67.6
Os04g0653100 Oryza sativa ssp. japonica HOM05D005425 ORTHO05D006686 6.1e-35 151.4 109 67.0
Sabra06G0167600 Salix brachista HOM05D005425 ORTHO05D006686 6.1e-35 151.4 110 65.5
Glyma.13G116300 Glycine max HOM05D005425 ORTHO05D006686 7.9e-35 151.0 112 67.9
HPP92_010993 Vanilla planifolia HOM05D005425 ORTHO05D006686 7.9e-35 151.0 112 67.0
EL10Ac9g22844 Beta vulgaris HOM05D005425 ORTHO05D006686 1.0e-34 150.6 112 67.9
DCAR_012869 Daucus carota HOM05D005425 ORTHO05D006686 1.0e-34 150.6 111 64.9
Migut.C01372 Erythranthe guttata HOM05D005425 ORTHO05D006686 1.0e-34 150.6 112 66.1
Psat4g020320 Pisum sativum HOM05D005425 ORTHO05D006686 1.0e-34 150.6 110 70.0
Medtr4g123593 Medicago truncatula HOM05D005425 ORTHO05D006686 1.4e-34 150.2 107 72.0
Zm00001eb068040 Zea mays HOM05D005425 ORTHO05D006686 1.4e-34 150.2 110 68.2
CSS0042296 Camellia sinensis var. sinensis HOM05D005425 ORTHO05D006686 1.8e-34 149.8 103 73.8
CDE11G0474 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 2.3e-34 149.4 119 63.9
Rhsim12G0137300 Rhododendron simsii HOM05D005425 ORTHO05D006686 2.3e-34 149.4 119 65.5
CANSAT56G0436 Cannabis sativa HOM05D005425 ORTHO05D006686 3.0e-34 149.1 104 70.2
CANSAT56G2296 Cannabis sativa HOM05D005425 ORTHO05D006686 3.0e-34 149.1 104 70.2
Manes.03G055300 Manihot esculenta HOM05D005425 ORTHO05D006686 3.9e-34 148.7 112 61.6
TAR383G0806 Trochodendron aralioides HOM05D005425 ORTHO05D006686 3.9e-34 148.7 130 62.3
SEGI_31971 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 5.1e-34 148.3 117 64.1
Sc19g0002240 Simmondsia chinensis HOM05D005425 ORTHO05D006686 5.1e-34 148.3 105 70.5
Cc01_g12410 Coffea canephora HOM05D005425 ORTHO05D006686 8.8e-34 147.5 111 64.9
FvH4_1g09870 Fragaria vesca HOM05D005425 ORTHO05D006686 1.1e-33 147.1 108 69.4
FAN19G0780 Fragaria x ananassa HOM05D005425 ORTHO05D006686 1.1e-33 147.1 108 69.4
RcHm_v2.0_Chr2g0096571 Rosa chinensis HOM05D005425 ORTHO05D006686 1.1e-33 147.1 111 67.6
AUR62026084 Chenopodium quinoa HOM05D005425 ORTHO05D006686 1.5e-33 146.7 107 71.0
AUR62024499 Chenopodium quinoa HOM05D005425 ORTHO05D006686 4.4e-33 145.2 105 72.4
THA.LOC104810974 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 5.7e-33 144.8 108 63.9
Ah.04g151490 Amaranthus hybridus HOM05D005425 ORTHO05D006686 9.7e-33 144.1 107 68.2
Oeu023197.1 Olea europaea HOM05D005425 ORTHO05D006686 1.3e-32 143.7 112 63.4
Ah.01g013630 Amaranthus hybridus HOM05D005425 ORTHO05D006686 1.7e-32 143.3 112 64.3
Hund24245 Selenicereus undatus HOM05D000001 ORTHO05D000003 2.2e-32 142.9 99 71.7
THA.LOC104799598 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 2.2e-32 142.9 107 63.6
QL11p003539 Quercus lobata HOM05D005425 ORTHO05D006686 3.7e-32 142.1 163 50.3
MSTRG.1593 Avicennia marina HOM05D005425 ORTHO05D006686 8.2e-32 141.0 109 62.4
EL10Ac3g07129 Beta vulgaris HOM05D005425 ORTHO05D006686 1.1e-31 140.6 111 65.8
Manes.16G088201 Manihot esculenta HOM05D005425 ORTHO05D006686 1.4e-31 140.2 105 61.9
Sc13g0001610 Simmondsia chinensis HOM05D005425 ORTHO05D006686 3.1e-31 139.0 114 63.2
AT3G43520 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 9.1e-31 137.5 112 58.0
Sed0015214 Sechium edule HOM05D005425 ORTHO05D006686 1.2e-30 137.1 111 62.2
Nitab4.5_0000610g0160 Nicotiana tabacum HOM05D005425 ORTHO05D006686 1.6e-30 136.7 112 61.6
CsaV3_1G041480 Cucumis sativus L. HOM05D005425 ORTHO05D006686 2.0e-30 136.3 111 62.2
Carub.0005s0927 Capsella rubella HOM05D005425 ORTHO05D006686 2.6e-30 136.0 112 57.1
Peaxi162Scf00406g00239 Petunia axillaris HOM05D005425 ORTHO05D006686 3.5e-30 135.6 112 61.6
Solyc11g073240.2 Solanum lycopersicum HOM05D005425 ORTHO05D006686 5.9e-30 134.8 112 58.9
Aa31LG4G13370 Aethionema arabicum HOM05D005425 ORTHO05D006686 7.7e-30 134.4 107 60.7
CAN.G764.11 Capsicum annuum HOM05D005425 ORTHO05D006686 7.7e-30 134.4 112 59.8
Pp3c23_11420 Physcomitrium patens HOM05D005425 ORTHO05D006686 7.7e-30 134.4 112 59.8
AL5G21490 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 1.0e-29 134.0 112 58.0
CARHR098710 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.3e-29 133.7 111 56.8
PGSC0003DMG401015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.7e-29 133.3 107 62.6
PGSC0003DMG402015541 Solanum tuberosum HOM05D005425 ORTHO05D006686 1.7e-29 133.3 107 62.6
Sopen11g030870 Solanum pennellii HOM05D005425 ORTHO05D006686 2.9e-29 132.5 112 58.9
unitig_578.g16119 Utricularia gibba HOM05D005425 ORTHO05D006686 2.9e-29 132.5 108 61.1
BcaB02g10778 Brassica carinata HOM05D005425 ORTHO05D006686 6.5e-29 131.3 107 57.9
BcaC01g02214 Brassica carinata HOM05D005425 ORTHO05D006686 8.5e-29 131.0 107 58.9
A06p26640 Brassica napus HOM05D005425 ORTHO05D006686 8.5e-29 131.0 107 58.9
C03p67740 Brassica napus HOM05D005425 ORTHO05D006686 8.5e-29 131.0 107 58.9
BolSC21t60236H Brassica oleracea HOM05D005425 ORTHO05D006686 8.5e-29 131.0 107 58.9
BraA06t25598Z Brassica rapa HOM05D005425 ORTHO05D006686 8.5e-29 131.0 107 58.9
Pp3c23_5560 Physcomitrium patens HOM05D005425 ORTHO05D006686 8.5e-29 131.0 106 60.4
SMO347G0418 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 8.5e-29 131.0 113 60.2
PGSC0003DMG400015542 Solanum tuberosum HOM05D005425 ORTHO05D006686 8.5e-29 131.0 106 61.3
CDE05G1879 Ceratophyllum demersum HOM05D005425 ORTHO05D006686 1.5e-28 130.2 99 65.7
Sp5g17760 Schrenkiella parvula HOM05D005425 ORTHO05D006686 1.5e-28 130.2 107 58.9
THA.LOC104804448 Tarenaya hassleriana HOM05D005425 ORTHO05D006686 3.2e-28 129.0 106 62.3
SMO351G0348 Selaginella moellendorffii HOM05D005425 ORTHO05D006686 5.5e-28 128.3 105 61.0
AL4G18820 Arabidopsis lyrata HOM05D005425 ORTHO05D006686 4.7e-27 125.2 104 61.5
SGA_v2.0_scaffold118G32605 Striga asiatica HOM05D005425 ORTHO05D006686 6.1e-27 124.8 112 57.1
CARHR115050 Cardamine hirsuta HOM05D005425 ORTHO05D006686 1.0e-26 124.0 104 60.6
AT2G26240 Arabidopsis thaliana HOM05D005425 ORTHO05D006686 1.4e-26 123.6 104 60.6
Aa31LG5G9560 Aethionema arabicum HOM05D005425 ORTHO05D006686 1.8e-26 123.2 108 60.2
Sp4g06390 Schrenkiella parvula HOM05D005425 ORTHO05D006686 2.3e-26 122.9 104 60.6
AagrBONN_evm.TU.Sc2ySwM_344.3815 Anthoceros agrestis HOM05D005425 ORTHO05D006686 4.0e-26 122.1 103 56.3
BcaC07g40833 Brassica carinata HOM05D005425 ORTHO05D006686 4.0e-26 122.1 104 59.6
A09p55370 Brassica napus HOM05D000181 ORTHO05D004115 4.0e-26 122.1 104 59.6
C08p38290 Brassica napus HOM05D000181 ORTHO05D004115 4.0e-26 122.1 104 59.6
BolC8t51404H Brassica oleracea HOM05D005425 ORTHO05D006686 4.0e-26 122.1 104 59.6
BraA09t40938Z Brassica rapa HOM05D005425 ORTHO05D006686 4.0e-26 122.1 104 59.6
BcaB08g35283 Brassica carinata HOM05D005425 ORTHO05D006686 5.2e-26 121.7 104 59.6
FAN23G2130 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.8e-26 120.9 95 64.2
FAN28G1834 Fragaria x ananassa HOM05D005425 ORTHO05D006686 8.8e-26 120.9 95 64.2
Mapoly0059s0086 Marchantia polymorpha HOM05D005425 ORTHO05D006686 1.3e-24 117.1 95 60.0
Carub.0004s0606 Capsella rubella HOM05D005425 ORTHO05D006686 1.7e-24 116.7 107 57.0
SEGI_36327 Sequoiadendron giganteum HOM05D005425 ORTHO05D006686 1.7e-24 116.7 104 57.7
PGR142G0340 Punica granatum HOM05D005425 ORTHO05D006686 6.3e-24 114.8 107 58.9
vmacro13523 Vaccinium macrocarpon HOM05D005425 ORTHO05D006686 8.2e-24 114.4 103 60.2
Thhalv10002166m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.8e-18 96.7 85 57.6
CBR_g16036 Chara braunii HOM05D005425 ORTHO05D006686 3.7e-16 89.0 99 44.4
Thhalv10002673m.g Eutrema salsugineum HOM05D005425 ORTHO05D006686 1.2e-14 84.0 67 61.2
Zm00001eb432380 Zea mays HOM05D005425 ORTHO05D006686 1.0e-13 80.9 84 52.4
FvH4_1g06370 Fragaria vesca HOM05D005425 ORTHO05D046282 1.5e-09 67.0 66 60.6
FAN19G2796 Fragaria x ananassa HOM05D005425 ORTHO05D046282 4.4e-09 65.5 66 59.1
Oeu020536.1 Olea europaea HOM05D005425 ORTHO05D006686 7.0e-07 58.2 58 53.4
SGA_v2.0_scaffold8G04307 Striga asiatica HOM05D004888 ORTHO05D005792 1.6e-06 57.0 99 38.4
MSTRG.6911 Avicennia marina HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 38.0
BcaB07g33513 Brassica carinata HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 37.0
A06p02870 Brassica napus HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 37.0
C06p06010 Brassica napus HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 37.0
BolC6t35714H Brassica oleracea HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 37.0
BraA06t23494Z Brassica rapa HOM05D004888 ORTHO05D005792 2.7e-06 56.2 100 37.0
Cre08.g383300 Chlamydomonas reinhardtii HOM05D005425 ORTHO05D006686 2.7e-06 56.2 104 35.6
BcaC08g43255 Brassica carinata HOM05D004888 ORTHO05D005792 5.9e-06 55.1 100 36.0


User provided reference genes

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