Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.5e-138 496.1 244 100.0
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.0e-86 323.9 287 65.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-84 317.0 363 53.4
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 4.2e-64 248.8 364 43.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 4.2e-64 248.8 412 40.8
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 2.3e-62 243.0 412 40.0
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 7.0e-59 231.5 408 40.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 4.5e-58 228.8 410 38.5
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 4.5e-58 228.8 410 38.5
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 4.5e-58 228.8 410 38.5
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 5.9e-58 228.4 410 38.5
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 7.7e-58 228.0 423 38.8
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 7.7e-58 228.0 412 38.3
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 1.0e-57 227.6 393 39.7
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.7e-57 226.9 401 38.2
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.7e-57 226.9 413 39.2
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.2e-57 226.5 409 37.7
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 2.2e-57 226.5 410 38.0
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 2.2e-57 226.5 410 38.0
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 2.2e-57 226.5 407 38.6
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.2e-57 226.5 410 38.3
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.9e-57 226.1 403 39.7
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.9e-57 226.1 410 38.0
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.9e-57 226.1 410 38.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.9e-57 226.1 409 38.1
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 3.8e-57 225.7 408 37.7
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.8e-57 225.7 413 39.5
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 3.8e-57 225.7 419 37.5
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 5.0e-57 225.3 411 38.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 5.0e-57 225.3 410 37.8
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 6.5e-57 224.9 410 38.3
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 6.5e-57 224.9 420 37.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 8.5e-57 224.6 411 38.2
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 8.5e-57 224.6 395 38.2
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.5e-57 224.6 403 38.2
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 8.5e-57 224.6 405 38.0
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 1.1e-56 224.2 408 37.5
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 1.1e-56 224.2 399 40.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.5e-56 223.8 410 37.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.5e-56 223.8 413 37.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 1.9e-56 223.4 379 39.1
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.5e-56 223.0 405 37.3
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 2.5e-56 223.0 413 37.8
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.2e-56 222.6 412 37.6
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 4.2e-56 222.2 401 38.4
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 5.5e-56 221.9 414 37.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.5e-56 221.9 418 38.3
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 7.2e-56 221.5 409 37.2
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 9.4e-56 221.1 412 37.1
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 9.4e-56 221.1 412 37.4
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.2e-55 220.7 401 38.4
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 1.2e-55 220.7 401 38.2
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.2e-55 220.7 401 37.9
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.2e-55 220.7 413 37.8
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.2e-55 220.7 413 37.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.6e-55 220.3 413 37.0
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.6e-55 220.3 401 37.4
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.6e-55 220.3 401 37.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.1e-55 219.9 414 37.2
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 2.7e-55 219.5 408 37.5
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 2.7e-55 219.5 401 38.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 3.6e-55 219.2 405 38.3
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 4.7e-55 218.8 386 38.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 4.7e-55 218.8 405 39.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 6.1e-55 218.4 403 37.2
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.1e-55 218.4 401 37.2
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 8.0e-55 218.0 405 39.3
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.0e-55 218.0 405 39.0
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 8.0e-55 218.0 397 37.8
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.0e-54 217.6 413 37.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.4e-54 217.2 401 36.7
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.4e-54 217.2 414 37.4
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-54 216.9 408 36.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.8e-54 216.9 405 37.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 4.0e-54 215.7 413 37.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.0e-54 215.7 406 39.4
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.0e-54 215.7 412 37.1
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 5.2e-54 215.3 408 37.3
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.2e-54 215.3 404 36.9
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 5.2e-54 215.3 417 37.4
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 5.2e-54 215.3 397 37.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 5.2e-54 215.3 397 37.0
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 2.0e-53 213.4 397 37.0
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 2.0e-53 213.4 410 38.5
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.6e-53 213.0 401 36.4
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.5e-53 211.5 415 38.3
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 9.7e-53 211.1 410 36.6
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 1.3e-52 210.7 397 36.8
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.7e-52 210.3 395 37.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-52 209.9 415 38.3
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 3.7e-52 209.1 414 36.0
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 3.7e-52 209.1 397 36.3
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 6.3e-52 208.4 398 36.7
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 6.3e-52 208.4 397 36.0
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 8.2e-52 208.0 429 35.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.4e-51 207.2 335 42.1
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 2.4e-51 206.5 413 35.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 3.1e-51 206.1 435 34.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 4.1e-51 205.7 394 36.0
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 4.1e-51 205.7 400 36.2
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 3.5e-50 202.6 412 36.9
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-49 201.1 388 36.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 3.8e-49 199.1 404 36.1
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.0e-49 198.7 400 37.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 3.6e-47 192.6 397 35.0
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 4.7e-47 192.2 423 33.8
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.0e-46 191.0 401 36.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 8.8e-46 188.0 397 33.5
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.5e-45 187.2 412 34.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 1.5e-45 187.2 384 35.9
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.0e-45 186.8 416 33.7
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 4.8e-44 182.2 181 60.2
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.4e-43 180.6 372 34.7
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.8e-43 180.3 173 59.0
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 5.4e-43 178.7 405 32.8
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.5e-42 176.0 238 45.8
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.1e-40 171.0 135 68.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 9.5e-40 167.9 402 33.3
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.5e-37 160.6 398 32.7
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 3.4e-37 159.5 392 32.4
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 1.1e-35 154.5 390 30.5
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.1e-35 152.5 116 67.2
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-31 141.0 119 64.7
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.2e-30 135.6 348 32.5
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 6.8e-30 135.2 365 29.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 3.4e-29 132.9 335 30.4
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 1.9e-27 127.1 70 92.9
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 2.1e-23 113.6 95 57.9
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 4.7e-23 112.5 143 52.4
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 8.0e-23 111.7 56 85.7
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 8.0e-23 111.7 193 39.4
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 3.1e-22 109.8 61 78.7
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.2e-22 109.0 325 30.2
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.0e-21 107.1 61 78.7
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.6e-21 106.7 61 77.0
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.6e-21 106.7 61 77.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 4.4e-21 105.9 60 81.7
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 5.8e-21 105.5 60 80.0
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-20 104.4 77 70.1
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.4e-20 102.1 341 28.7
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.3e-20 101.7 373 26.0
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.0e-17 94.7 115 42.6
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 1.9e-16 90.5 375 25.3
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.9e-16 90.5 395 24.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.3e-16 89.7 375 25.1
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 3.3e-16 89.7 74 62.2
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.6e-15 86.3 123 45.5
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 1.2e-13 81.3 61 59.0
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 4.4e-13 79.3 61 57.4
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.3e-09 67.8 54 59.3
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.7e-09 67.4 52 67.3
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 3.9e-09 66.2 89 46.1
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.9e-08 63.9 44 65.9
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 2.4e-06 57.0 67 44.8
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.2e-06 55.8 64 50.0


User provided reference genes

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