Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 0.0e+00 1152.5 600 100.0
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 7.6e-208 727.6 668 62.3
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 5.1e-204 714.9 667 61.8
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 2.9e-199 699.1 663 60.0
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 1.6e-197 693.3 666 59.6
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 2.7e-197 692.6 644 60.9
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 2.7e-197 692.6 680 58.7
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 1.5e-195 686.8 653 59.0
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.1e-193 680.6 672 58.0
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 3.1e-193 679.1 645 59.4
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 5.3e-193 678.3 665 58.2
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 9.0e-193 677.6 667 58.9
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 1.5e-192 676.8 662 58.6
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 1.3e-191 673.7 660 58.2
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 2.2e-191 672.9 658 58.5
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 2.9e-191 672.5 688 56.0
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 1.1e-190 670.6 688 56.4
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 4.2e-190 668.7 644 57.5
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.2e-189 667.2 644 57.5
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 1.6e-189 666.8 648 58.3
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.0e-188 664.1 659 57.4
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 3.0e-188 662.5 662 58.3
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 5.1e-188 661.8 662 58.3
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 1.1e-187 660.6 649 59.6
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 2.5e-187 659.4 662 58.0
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 5.7e-187 658.3 663 57.0
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 2.8e-186 656.0 594 61.8
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 2.8e-186 656.0 653 58.2
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 2.4e-185 652.9 594 61.6
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 3.1e-185 652.5 644 57.1
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 4.1e-185 652.1 610 59.3
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 2.0e-184 649.8 645 58.3
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 2.0e-184 649.8 618 58.7
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 2.6e-184 649.4 660 56.2
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 2.2e-183 646.4 660 55.9
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 5.0e-183 645.2 672 55.5
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 6.5e-183 644.8 649 56.1
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 3.2e-182 642.5 662 57.1
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 7.2e-182 641.3 618 58.6
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 1.2e-181 640.6 654 55.7
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 2.1e-181 639.8 660 55.3
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 6.1e-181 638.3 661 54.9
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 1.0e-180 637.5 656 56.1
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.4e-180 637.1 671 54.5
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 7.4e-179 631.3 655 55.4
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 4.8e-178 628.6 650 55.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 4.8e-178 628.6 666 55.3
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 2.4e-177 626.3 678 54.0
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 3.1e-177 625.9 652 54.9
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 3.1e-177 625.9 600 57.3
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 5.3e-177 625.2 593 58.3
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 1.2e-176 624.0 675 53.6
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 4.5e-176 622.1 662 54.4
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 5.9e-176 621.7 613 56.6
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 7.7e-176 621.3 612 56.5
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 7.7e-176 621.3 631 55.9
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 1.0e-175 620.9 620 57.6
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 1.3e-175 620.5 657 54.0
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 1.7e-175 620.2 610 56.4
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 2.2e-175 619.8 618 56.1
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 2.2e-175 619.8 666 55.6
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 5.0e-175 618.6 613 57.1
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 1.1e-174 617.5 612 56.2
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 1.4e-174 617.1 612 56.2
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 1.4e-174 617.1 612 56.2
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 1.4e-174 617.1 612 56.2
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.5e-174 616.3 659 53.4
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 9.4e-174 614.4 613 56.6
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 9.4e-174 614.4 613 56.6
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 1.6e-173 613.6 612 55.6
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 1.6e-173 613.6 655 53.9
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 3.6e-173 612.5 649 54.2
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 6.1e-173 611.7 642 54.8
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 3.9e-172 609.0 672 54.0
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 1.1e-171 607.4 619 55.3
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 3.3e-171 605.9 656 53.5
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.7e-170 603.6 660 53.0
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 1.7e-170 603.6 563 59.3
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 2.4e-169 599.7 757 49.3
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 3.5e-168 595.9 674 51.9
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 1.9e-166 590.1 644 51.9
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 4.2e-166 589.0 655 53.9
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 5.5e-166 588.6 658 53.3
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 1.2e-165 587.4 648 52.8
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 3.6e-165 585.9 675 52.9
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 4.7e-165 585.5 653 51.5
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 6.1e-165 585.1 668 51.6
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 8.0e-165 584.7 653 51.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 3.0e-164 582.8 665 50.8
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 8.8e-164 581.3 655 53.3
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 4.4e-163 578.9 672 51.9
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 2.2e-162 576.6 607 53.7
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 4.5e-160 568.9 643 50.9
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 5.9e-160 568.5 611 52.4
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 3.8e-159 565.8 651 53.3
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 5.5e-158 562.0 615 53.5
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 3.6e-157 559.3 589 54.5
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 5.4e-153 545.4 648 49.2
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 8.6e-151 538.1 668 49.6
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 5.5e-150 535.4 646 49.8
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 2.8e-146 523.1 593 50.8
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 1.6e-141 507.3 635 49.1
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.3e-138 497.7 690 45.1
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.9e-137 493.8 345 71.9
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 7.0e-137 491.9 647 46.8
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 3.5e-112 409.8 583 42.0
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.3e-110 403.3 512 49.2
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 1.4e-108 397.9 659 38.4
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 5.4e-105 386.0 660 37.1
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 3.5e-104 383.3 298 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 1.8e-100 370.9 576 39.4
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.5e-99 367.9 671 37.7
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 3.8e-98 363.2 351 56.7
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 4.9e-98 362.8 579 37.8
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 5.9e-51 206.5 179 62.6
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.2e-49 200.3 199 59.3
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.2e-49 200.3 199 59.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.8e-47 194.9 595 24.7
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.5e-41 175.3 157 62.4
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.0e-39 167.5 199 51.8
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 2.8e-37 161.0 580 26.7
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 4.5e-35 153.7 120 70.0
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 5.7e-30 136.7 362 28.7
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 3.9e-26 124.0 80 78.8
FAN05G3456 Fragaria x ananassa HOM05D004602 ORTHO05D014120 8.3e-21 106.3 130 50.8
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.6e-19 102.1 566 23.0
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 3.5e-19 100.9 331 28.7
COL.COLO4_34262 Corchorus olitorius HOM05D004602 ORTHO05D014120 2.1e-11 75.1 84 58.3
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 4.3e-09 67.4 54 64.8
MBI06_g33528_MAGBIO Magnolia biondii HOM05D003412 ORTHO05D003962 3.1e-07 61.2 52 63.5
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 5.2e-07 60.5 31 83.9
GSVIVG01003576001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.2e-06 59.3 61 60.7
GSVIVG01034310001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.2e-06 59.3 61 62.3
GSVIVG01034319001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.2e-06 59.3 61 62.3
GSVIVG01001885001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.5e-06 58.9 61 62.3
GSVIVG01003584001 Vitis vinifera HOM05D013764 ORTHO05D014120 1.5e-06 58.9 61 62.3
GSVIVG01000678001 Vitis vinifera HOM05D013764 ORTHO05D014120 2.0e-06 58.5 61 62.3
GSVIVG01001876001 Vitis vinifera HOM05D013764 ORTHO05D014120 3.4e-06 57.8 61 60.7
GSVIVG01003891001 Vitis vinifera HOM05D013764 ORTHO05D014120 4.4e-06 57.4 61 60.7


User provided reference genes

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