Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g00896_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 5.6e-56 220.7 111 100.0
MBI13_g00894_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 1.9e-27 125.9 69 89.9
MBI19_g39605_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 7.9e-18 94.0 69 71.0
Nn2g14603 Nelumbo nucifera HOM05D002489 ORTHO05D002653 5.1e-17 91.3 74 66.2
Nn7g36989 Nelumbo nucifera HOM05D002489 ORTHO05D002653 3.3e-16 88.6 75 62.7
FvH4_7g04210 Fragaria vesca HOM05D002489 ORTHO05D002653 1.3e-15 86.7 75 60.0
FAN01G0190 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.3e-15 86.7 75 60.0
FAN03G2991 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.3e-15 86.7 75 60.0
FAN06G4066 Fragaria x ananassa HOM05D002489 ORTHO05D002653 3.7e-15 85.1 75 58.7
FAN10G0477 Fragaria x ananassa HOM05D002489 ORTHO05D002653 3.7e-15 85.1 75 58.7
Lj3g0021581 Lotus japonicus HOM05D002489 ORTHO05D002653 6.3e-15 84.3 75 62.7
Aqoxy2G00026_Aqoxy2G00027 Aquilegia oxysepala HOM05D002489 ORTHO05D002653 2.4e-14 82.4 73 61.6
Dinv15412 Davidia involucrata HOM05D002489 ORTHO05D002653 2.4e-14 82.4 77 61.0
RcHm_v2.0_Chr1g0328761 Rosa chinensis HOM05D002489 ORTHO05D002653 4.1e-14 81.6 91 49.5
PSO384G2450 Papaver somniferum HOM05D002489 ORTHO05D002653 5.3e-14 81.3 69 56.5
Glyma.06G311400 Glycine max HOM05D002489 ORTHO05D002653 2.6e-13 79.0 78 57.7
Gohir.A05G396200 Gossypium hirsutum HOM05D002489 ORTHO05D002653 3.4e-13 78.6 91 50.5
Gohir.D04G018800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 3.4e-13 78.6 90 52.2
Ciclev10002081m.g Citrus clementina HOM05D002489 ORTHO05D002653 4.5e-13 78.2 76 53.9
Actinidia18374 Actinidia chinensis HOM05D002489 ORTHO05D002653 5.9e-13 77.8 76 55.3
CiPaw.14G108000 Carya illinoinensis HOM05D002489 ORTHO05D002653 5.9e-13 77.8 75 58.7
Glyma.13G189400 Glycine max HOM05D002489 ORTHO05D002653 5.9e-13 77.8 75 60.0
Duzib114G0058 Durio zibethinus HOM05D002489 ORTHO05D002653 7.6e-13 77.4 85 51.8
Lalb_Chr03g0032591 Lupinus albus HOM05D002489 ORTHO05D002653 1.0e-12 77.0 71 62.0
GSVIVG01037394001 Vitis vinifera HOM05D002489 ORTHO05D002653 1.7e-12 76.3 78 56.4
COL.COLO4_21328 Corchorus olitorius HOM05D002489 ORTHO05D002653 2.2e-12 75.9 88 51.1
Gorai.012G022300 Gossypium raimondii HOM05D002489 ORTHO05D002653 2.9e-12 75.5 90 50.0
Rhsim13G0202300 Rhododendron simsii HOM05D002489 ORTHO05D002653 2.9e-12 75.5 75 54.7
TAR633G1712 Trochodendron aralioides HOM05D002489 ORTHO05D002653 2.9e-12 75.5 44 81.8
Actinidia07005 Actinidia chinensis HOM05D002489 ORTHO05D002653 3.8e-12 75.1 75 56.0
arahy.Tifrunner.gnm1.ann1.CT41QQ Arachis hypogaea HOM05D002489 ORTHO05D002653 5.0e-12 74.7 68 57.4
arahy.Tifrunner.gnm1.ann1.M21JET Arachis hypogaea HOM05D002489 ORTHO05D002653 5.0e-12 74.7 83 54.2
Thecc.10G138700 Theobroma cacao HOM05D002489 ORTHO05D002653 5.0e-12 74.7 90 46.7
arahy.Tifrunner.gnm1.ann1.1YL9TV Arachis hypogaea HOM05D002489 ORTHO05D002653 8.5e-12 73.9 83 51.8
Eucgr.J00664 Eucalyptus grandis HOM05D002489 ORTHO05D002653 8.5e-12 73.9 76 50.0
Hma1.2p1_2592F.1_g325030 Hydrangea macrophylla HOM05D002489 ORTHO05D002653 8.5e-12 73.9 75 50.7
Prupe.2G047600 Prunus persica HOM05D002489 ORTHO05D002653 1.1e-11 73.6 53 67.9
TWI15G0844 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 1.1e-11 73.6 75 57.3
Atru.chr4.883 Acer truncatum HOM05D002489 ORTHO05D002653 1.4e-11 73.2 76 52.6
Cc01_g07160 Coffea canephora HOM05D002489 ORTHO05D002653 1.4e-11 73.2 76 50.0
Duzib106G0143 Durio zibethinus HOM05D002489 ORTHO05D002653 1.4e-11 73.2 50 70.0
Duzib128G0493 Durio zibethinus HOM05D002489 ORTHO05D002653 1.4e-11 73.2 85 52.9
Gohir.D06G183800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 1.4e-11 73.2 100 46.0
Gorai.010G215200 Gossypium raimondii HOM05D002489 ORTHO05D002653 1.4e-11 73.2 100 46.0
Lj2C825G1 Lonicera japonica HOM05D002489 ORTHO05D002653 1.4e-11 73.2 75 49.3
TPR.G2578 Trifolium pratense HOM05D002489 ORTHO05D002653 1.4e-11 73.2 88 51.1
vmacro04096 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 1.4e-11 73.2 75 54.7
Nitab4.5_0002567g0120 Nicotiana tabacum HOM05D002489 ORTHO05D002653 1.9e-11 72.8 74 51.4
CSS0027937 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 2.5e-11 72.4 85 48.2
Peaxi162Scf00978g00427 Petunia axillaris HOM05D002489 ORTHO05D002653 2.5e-11 72.4 74 50.0
Peaxi162Scf47032g00004 Petunia axillaris HOM05D002489 ORTHO05D002653 2.5e-11 72.4 74 50.0
ClCG02G022540 Citrullus lanatus HOM05D002489 ORTHO05D002653 3.2e-11 72.0 75 50.7
CsaV3_6G038670 Cucumis sativus L. HOM05D002489 ORTHO05D002653 3.2e-11 72.0 75 50.7
Manes.04G155300 Manihot esculenta HOM05D002489 ORTHO05D002653 3.2e-11 72.0 94 42.6
QL04p021817 Quercus lobata HOM05D002489 ORTHO05D002653 3.2e-11 72.0 82 47.6
Sabra01G0023600 Salix brachista HOM05D002489 ORTHO05D002653 3.2e-11 72.0 98 42.9
arahy.Tifrunner.gnm1.ann1.L34J1I Arachis hypogaea HOM05D002489 ORTHO05D002653 4.2e-11 71.6 68 55.9
Hma1.2p1_1468F.1_g285540 Hydrangea macrophylla HOM05D002489 ORTHO05D002653 4.2e-11 71.6 75 49.3
Rhsim07G0072000 Rhododendron simsii HOM05D002489 ORTHO05D002653 4.2e-11 71.6 74 48.6
TPR.G9952 Trifolium pratense HOM05D002489 ORTHO05D002653 4.2e-11 71.6 78 51.3
Gohir.A06G173800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 5.5e-11 71.2 100 45.0
Sabra03G0143000 Salix brachista HOM05D002489 ORTHO05D002653 5.5e-11 71.2 54 64.8
CSS0044836 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 7.2e-11 70.9 83 43.4
Manes.11G008800 Manihot esculenta HOM05D002489 ORTHO05D002653 7.2e-11 70.9 57 64.9
Phvul.005G014300 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 7.2e-11 70.9 55 69.1
Glyma.15G227300 Glycine max HOM05D002489 ORTHO05D002653 9.4e-11 70.5 84 50.0
LjContig00430g0026017 Lotus japonicus HOM05D002489 ORTHO05D002653 9.4e-11 70.5 71 54.9
TAR623G0883 Trochodendron aralioides HOM05D002489 ORTHO05D002653 9.4e-11 70.5 76 51.3
TAR636G2122 Trochodendron aralioides HOM05D002489 ORTHO05D002653 9.4e-11 70.5 90 45.6
PSO675G1019 Papaver somniferum HOM05D002489 ORTHO05D002653 1.2e-10 70.1 46 73.9
PGR119G0475 Punica granatum HOM05D002489 ORTHO05D002653 1.2e-10 70.1 79 46.8
TWI63G0515 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 1.2e-10 70.1 50 64.0
CiPaw.13G017100 Carya illinoinensis HOM05D002489 ORTHO05D002653 1.6e-10 69.7 75 49.3
MELO3C014530.2 Cucumis melo HOM05D002489 ORTHO05D002653 1.6e-10 69.7 75 48.0
Potri.001G033200 Populus trichocarpa HOM05D002489 ORTHO05D002653 1.6e-10 69.7 46 69.6
PGR031G2636 Punica granatum HOM05D002489 ORTHO05D002653 1.6e-10 69.7 77 50.6
HanXRQChr03g0091651 Helianthus annuus HOM05D002489 ORTHO05D002653 2.1e-10 69.3 74 45.9
Phvul.008G204500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 2.1e-10 69.3 77 51.9
MD02G1273400 Malus domestica HOM05D002489 ORTHO05D002653 2.7e-10 68.9 52 65.4
Ca_24030_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 3.6e-10 68.6 93 44.1
Glyma.02G277000 Glycine max HOM05D002489 ORTHO05D002653 3.6e-10 68.6 77 51.9
Medtr8g041420 Medicago truncatula HOM05D002489 ORTHO05D002653 3.6e-10 68.6 93 41.9
Ca_14212_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 4.6e-10 68.2 80 51.2
Haze_23547 Corylus avellana HOM05D002489 ORTHO05D002653 4.6e-10 68.2 41 78.0
Potri.003G192100 Populus trichocarpa HOM05D002489 ORTHO05D002653 4.6e-10 68.2 93 45.2
Lalb_Chr17g0347751 Lupinus albus HOM05D002489 ORTHO05D002653 6.1e-10 67.8 77 51.9
MD07G1042300 Malus domestica HOM05D002489 ORTHO05D002653 7.9e-10 67.4 52 65.4
CANSAT56G2669 Cannabis sativa HOM05D002489 ORTHO05D002653 1.4e-09 66.6 41 75.6
Phvul.011G196500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 1.4e-09 66.6 76 51.3
Dinv31993 Davidia involucrata HOM05D002489 ORTHO05D002653 1.8e-09 66.2 74 50.0
Glyma.14G038800 Glycine max HOM05D002489 ORTHO05D002653 1.8e-09 66.2 77 50.6
Psat5g224160 Pisum sativum HOM05D002489 ORTHO05D002653 1.8e-09 66.2 77 51.9
VMungo0647G2089 Vigna mungo HOM05D002489 ORTHO05D002653 1.8e-09 66.2 77 49.4
Haze_02969 Corylus avellana HOM05D002489 ORTHO05D002653 2.3e-09 65.9 50 62.0
QL01p015995 Quercus lobata HOM05D002489 ORTHO05D002653 2.3e-09 65.9 77 48.1
Lalb_Chr18g0048111 Lupinus albus HOM05D002489 ORTHO05D002653 3.0e-09 65.5 71 56.3
Medtr3g012030 Medicago truncatula HOM05D002489 ORTHO05D002653 3.0e-09 65.5 79 50.6
CAN.G280.1 Capsicum annuum HOM05D002489 ORTHO05D002653 3.9e-09 65.1 81 48.1
Lsat_1_v5_gn_3_117840 Lactuca sativa HOM05D002489 ORTHO05D002653 3.9e-09 65.1 76 47.4
Gohir.A05G072900 Gossypium hirsutum HOM05D002489 ORTHO05D002653 5.1e-09 64.7 74 51.4
Lalb_Chr10g0106061 Lupinus albus HOM05D002489 ORTHO05D002653 5.1e-09 64.7 40 75.0
Psat0s3383g0080 Pisum sativum HOM05D002489 ORTHO05D002653 5.1e-09 64.7 75 52.0
Aqoxy1G00059 Aquilegia oxysepala HOM05D002489 ORTHO05D002653 6.7e-09 64.3 88 42.0
Cfa010969 Carpinus fangiana HOM05D002489 ORTHO05D002653 6.7e-09 64.3 45 66.7
TPR.G16405 Trifolium pratense HOM05D002489 ORTHO05D002653 8.8e-09 63.9 72 50.0
Medtr5g088760 Medicago truncatula HOM05D002489 ORTHO05D002653 1.1e-08 63.5 40 77.5
vmacro13785 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 1.1e-08 63.5 63 52.4
MSTRG.12423 Avicennia marina HOM05D002489 ORTHO05D002653 1.5e-08 63.2 72 48.6
CDE04G1622 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 1.5e-08 63.2 64 51.6
DCAR_006595 Daucus carota HOM05D002489 ORTHO05D002653 1.5e-08 63.2 75 48.0
Dinv02126 Davidia involucrata HOM05D002489 ORTHO05D002653 1.5e-08 63.2 74 47.3
PGSC0003DMG400027390 Solanum tuberosum HOM05D002489 ORTHO05D002653 1.5e-08 63.2 42 69.0
LjContig00564g0014208 Lotus japonicus HOM05D002489 ORTHO05D002653 1.9e-08 62.8 39 74.4
Sopen11g029800 Solanum pennellii HOM05D002489 ORTHO05D002653 1.9e-08 62.8 42 69.0
Thecc.09G251300 Theobroma cacao HOM05D002489 ORTHO05D002653 1.9e-08 62.8 71 50.7
arahy.Tifrunner.gnm1.ann1.YA9X9Q Arachis hypogaea HOM05D002489 ORTHO05D002653 2.5e-08 62.4 40 72.5
Oeu013061.1 Olea europaea HOM05D002489 ORTHO05D002653 3.3e-08 62.0 51 60.8
Potri.001G225400 Populus trichocarpa HOM05D002489 ORTHO05D002653 3.3e-08 62.0 43 67.4
Sed0021748 Sechium edule HOM05D002489 ORTHO05D002653 4.3e-08 61.6 76 44.7
CANSAT54G0417 Cannabis sativa HOM05D002489 ORTHO05D002653 5.7e-08 61.2 88 43.2
Cc00_g08160 Coffea canephora HOM05D002489 ORTHO05D002653 5.7e-08 61.2 72 45.8
Potri.009G022050 Populus trichocarpa HOM05D002489 ORTHO05D002653 5.7e-08 61.2 42 69.0
TWI31G1036 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 7.4e-08 60.8 53 60.4
VMungo1127G1287 Vigna mungo HOM05D002489 ORTHO05D002653 7.4e-08 60.8 71 49.3
FAN03G1474 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.3e-07 60.1 92 43.5
Peaxi162Scf00050g02112 Petunia axillaris HOM05D002489 ORTHO05D002653 1.3e-07 60.1 72 48.6
SalBow3G1159 Salvia bowleyana HOM05D002489 ORTHO05D002653 1.3e-07 60.1 72 48.6
Gohir.D05G075800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 1.7e-07 59.7 73 50.7
Sed0020453 Sechium edule HOM05D002489 ORTHO05D002653 1.7e-07 59.7 85 42.4
Dinv31538 Davidia involucrata HOM05D002489 ORTHO05D002653 2.2e-07 59.3 41 63.4
Duzib168G0048 Durio zibethinus HOM05D002489 ORTHO05D002653 2.2e-07 59.3 68 42.6
CDE07G0320 Ceratophyllum demersum HOM05D002489 ORTHO05D002653 2.8e-07 58.9 64 51.6
Manes.01G176600 Manihot esculenta HOM05D002489 ORTHO05D002653 2.8e-07 58.9 71 47.9
CiPaw.14G010800 Carya illinoinensis HOM05D002489 ORTHO05D002653 4.8e-07 58.2 83 42.2
COL.COLO4_33264 Corchorus olitorius HOM05D002489 ORTHO05D002653 4.8e-07 58.2 71 42.3
FAN06G2510 Fragaria x ananassa HOM05D002489 ORTHO05D002653 4.8e-07 58.2 90 41.1
Gorai.009G077100 Gossypium raimondii HOM05D002489 ORTHO05D002653 4.8e-07 58.2 73 49.3
Lalb_Chr19g0132861 Lupinus albus HOM05D002489 ORTHO05D002653 4.8e-07 58.2 50 62.0
Oeu013452.1 Olea europaea HOM05D002489 ORTHO05D002653 4.8e-07 58.2 76 42.1
Sc06g0004810 Simmondsia chinensis HOM05D002489 ORTHO05D002653 4.8e-07 58.2 70 42.9
CsaV3_5G029530 Cucumis sativus L. HOM05D002489 ORTHO05D002653 8.2e-07 57.4 83 38.6
DCAR_025311 Daucus carota HOM05D002489 ORTHO05D002653 8.2e-07 57.4 74 43.2
ECA238G0759 Erigeron canadensis HOM05D002489 ORTHO05D002653 8.2e-07 57.4 77 44.2
RcHm_v2.0_Chr1g0336861 Rosa chinensis HOM05D002489 ORTHO05D002653 1.4e-06 56.6 43 65.1
Aa31sc1276G10 Aethionema arabicum HOM05D002489 ORTHO05D002653 3.1e-06 55.5 66 53.0
Migut.D00705 Erythranthe guttata HOM05D002489 ORTHO05D002653 3.1e-06 55.5 79 43.0
THA.LOC104809911 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 3.1e-06 55.5 72 45.8
FvH4_7g06930 Fragaria vesca HOM05D002489 ORTHO05D002653 5.3e-06 54.7 98 37.8
Lj5g0011508 Lotus japonicus HOM05D002489 ORTHO05D002653 5.3e-06 54.7 53 58.5
Sed0016042 Sechium edule HOM05D002489 ORTHO05D002653 5.3e-06 54.7 82 36.6
MELO3C011797.2 Cucumis melo HOM05D002489 ORTHO05D002653 6.9e-06 54.3 82 37.8
Migut.N02403 Erythranthe guttata HOM05D002489 ORTHO05D002653 6.9e-06 54.3 65 41.5
Psat4g189760 Pisum sativum HOM05D002489 ORTHO05D002653 6.9e-06 54.3 55 58.2
AUR62031683 Chenopodium quinoa HOM05D002489 ORTHO05D002653 9.1e-06 53.9 53 56.6
THA.LOC104826742 Tarenaya hassleriana HOM05D002489 ORTHO05D002653 9.1e-06 53.9 71 46.5


User provided reference genes

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