Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g00703_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 1.1e-186 656.4 307 100.0
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 1.5e-34 151.0 365 31.0
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.5e-26 124.4 310 31.3
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 7.5e-26 122.1 306 32.0
Nn1g06166 Nelumbo nucifera HOM05D001093 ORTHO05D000743 5.4e-24 115.9 316 27.2
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 9.2e-24 115.2 176 40.3
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 3.5e-23 113.2 309 29.8
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 1.3e-22 111.3 308 27.6
Dinv24318 Davidia involucrata HOM05D001093 ORTHO05D000743 6.6e-22 109.0 301 29.9
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 7.3e-21 105.5 303 27.4
Aqoxy6G00388 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 9.5e-21 105.1 215 35.3
Migut.H00747 Erythranthe guttata HOM05D001093 ORTHO05D000743 9.5e-21 105.1 337 26.7
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 1.6e-20 104.4 169 39.1
Actinidia01147 Actinidia chinensis HOM05D001093 ORTHO05D000743 3.6e-20 103.2 153 38.6
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.7e-20 102.8 93 49.5
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.7e-20 102.8 93 49.5
PGSC0003DMG400028673 Solanum tuberosum HOM05D001093 ORTHO05D000743 6.1e-20 102.4 335 26.3
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 8.0e-20 102.1 110 45.5
Dinv25836 Davidia involucrata HOM05D001093 ORTHO05D000743 1.4e-19 101.3 162 35.2
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 1.4e-19 101.3 158 35.4
Lsat_1_v5_gn_8_117260 Lactuca sativa HOM05D001093 ORTHO05D000743 5.2e-19 99.4 312 26.6
Nitab4.5_0013462g0030 Nicotiana tabacum HOM05D001093 ORTHO05D000743 5.2e-19 99.4 314 27.4
Sabra05G0130700 Salix brachista HOM05D001093 ORTHO05D000743 5.2e-19 99.4 336 25.6
Potri.005G173200 Populus trichocarpa HOM05D001093 ORTHO05D000743 2.0e-18 97.4 351 25.4
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 3.4e-18 96.7 315 27.0
Potri.007G110400 Populus trichocarpa HOM05D001093 ORTHO05D000743 9.8e-18 95.1 303 25.4
Manes.12G152400 Manihot esculenta HOM05D001093 ORTHO05D000743 1.3e-17 94.7 154 34.4
Nitab4.5_0004105g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.3e-17 94.7 332 27.4
Sopen11g001700 Solanum pennellii HOM05D001093 ORTHO05D000743 4.9e-17 92.8 337 25.2
Nitab4.5_0000504g0100 Nicotiana tabacum HOM05D001093 ORTHO05D000743 8.3e-17 92.0 122 42.6
THA.LOC104806851 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 8.3e-17 92.0 345 24.1
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 1.1e-16 91.7 315 25.7
Migut.C01023 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.8e-16 90.9 307 25.7
Prupe.8G022600 Prunus persica HOM05D001093 ORTHO05D000743 1.8e-16 90.9 91 46.2
Solyc11g005740.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.8e-16 90.9 337 25.2
Lj4C851G10 Lonicera japonica HOM05D001093 ORTHO05D000743 2.4e-16 90.5 100 46.0
QL02p024630 Quercus lobata HOM05D001093 ORTHO05D000743 2.4e-16 90.5 93 45.2
FAN11G1971 Fragaria x ananassa HOM05D001093 ORTHO05D000743 5.4e-16 89.4 116 40.5
Ciclev10025832m.g Citrus clementina HOM05D001093 ORTHO05D000743 9.2e-16 88.6 302 26.5
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 9.2e-16 88.6 97 44.3
Glyma.20G165200 Glycine max HOM05D001093 ORTHO05D000743 9.2e-16 88.6 299 26.4
Nitab4.5_0004819g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 9.2e-16 88.6 87 50.6
Sabra05G0144700 Salix brachista HOM05D001093 ORTHO05D000743 1.2e-15 88.2 343 25.7
Solyc04g050720.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.2e-15 88.2 162 34.6
FvH4_3g26810 Fragaria vesca HOM05D001093 ORTHO05D000743 1.6e-15 87.8 107 41.1
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 2.0e-15 87.4 95 44.2
CiPaw.15G019400 Carya illinoinensis HOM05D001093 ORTHO05D000743 2.7e-15 87.0 137 38.7
FAN27G2937 Fragaria x ananassa HOM05D001093 ORTHO05D000743 3.5e-15 86.7 116 39.7
Potri.005G189400 Populus trichocarpa HOM05D001093 ORTHO05D000743 3.5e-15 86.7 347 24.2
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 4.6e-15 86.3 90 46.7
ECA236G3128 Erigeron canadensis HOM05D001093 ORTHO05D000743 5.9e-15 85.9 306 26.5
Migut.C01021 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.9e-15 85.9 93 44.1
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 5.9e-15 85.9 165 32.7
Peaxi162Scf01184g00141 Petunia axillaris HOM05D001093 ORTHO05D000743 5.9e-15 85.9 295 24.7
MSTRG.1367 Avicennia marina HOM05D001093 ORTHO05D000743 7.8e-15 85.5 92 41.3
DCAR_010276 Daucus carota HOM05D001093 ORTHO05D000743 7.8e-15 85.5 93 44.1
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 1.0e-14 85.1 82 48.8
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 1.0e-14 85.1 306 24.8
FAN16G2856 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.3e-14 84.7 107 39.3
Glyma.10G227100 Glycine max HOM05D001093 ORTHO05D000743 1.7e-14 84.3 129 35.7
RcHm_v2.0_Chr6g0276691 Rosa chinensis HOM05D001093 ORTHO05D000743 1.7e-14 84.3 115 37.4
Sopen04g004530 Solanum pennellii HOM05D001093 ORTHO05D000743 1.7e-14 84.3 85 45.9
Cc07_g17870 Coffea canephora HOM05D001093 ORTHO05D000743 3.0e-14 83.6 345 27.0
Solyc04g009400.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 3.0e-14 83.6 85 45.9
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 3.9e-14 83.2 356 25.0
Migut.C01024 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.0e-14 82.8 301 24.6
Medtr3g095800 Medicago truncatula HOM05D001093 ORTHO05D000743 5.0e-14 82.8 305 22.0
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 1.1e-13 81.6 201 29.4
Sc02g0004330 Simmondsia chinensis HOM05D001093 ORTHO05D000743 1.1e-13 81.6 307 25.1
HPP92_004390 Vanilla planifolia HOM05D001093 ORTHO05D000743 1.1e-13 81.6 83 44.6
HPP92_027188 Vanilla planifolia HOM05D001093 ORTHO05D000743 1.1e-13 81.6 83 44.6
Manes.18G089400 Manihot esculenta HOM05D001093 ORTHO05D000743 1.5e-13 81.3 95 41.1
Oeu032979.1 Olea europaea HOM05D001093 ORTHO05D000743 1.5e-13 81.3 102 38.2
SGA_v2.0_scaffold250G45002 Striga asiatica HOM05D001093 ORTHO05D000743 1.5e-13 81.3 338 24.3
TPR.G7732 Trifolium pratense HOM05D001093 ORTHO05D000743 1.5e-13 81.3 310 23.5
ClCG09G009890 Citrullus lanatus HOM05D001093 ORTHO05D000743 2.5e-13 80.5 87 42.5
Nitab4.5_0002121g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.5e-13 80.5 332 24.1
Glyma.10G227200 Glycine max HOM05D001093 ORTHO05D000743 5.6e-13 79.3 130 35.4
Cc10_g14180 Coffea canephora HOM05D001093 ORTHO05D000743 7.3e-13 79.0 91 45.1
Os12g0161900 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 7.3e-13 79.0 215 27.4
Peaxi162Scf00071g00201 Petunia axillaris HOM05D001093 ORTHO05D000743 7.3e-13 79.0 82 46.3
Lsat_1_v5_gn_3_106880 Lactuca sativa HOM05D001093 ORTHO05D000743 2.1e-12 77.4 80 45.0
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 2.1e-12 77.4 180 30.0
arahy.Tifrunner.gnm1.ann1.43LRWI Arachis hypogaea HOM05D001093 ORTHO05D000743 2.8e-12 77.0 83 43.4
arahy.Tifrunner.gnm1.ann1.U9V461 Arachis hypogaea HOM05D001093 ORTHO05D000743 2.8e-12 77.0 83 43.4
Eucgr.F02722 Eucalyptus grandis HOM05D001093 ORTHO05D000743 2.8e-12 77.0 133 33.8
Lj5g0005381 Lotus japonicus HOM05D001093 ORTHO05D000743 3.6e-12 76.6 138 33.3
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 3.6e-12 76.6 90 37.8
AUR62017920 Chenopodium quinoa HOM05D001093 ORTHO05D000743 4.7e-12 76.3 83 43.4
Psat6g194360 Pisum sativum HOM05D001093 ORTHO05D000743 4.7e-12 76.3 89 41.6
FAN21G1098 Fragaria x ananassa HOM05D001093 ORTHO05D000743 6.2e-12 75.9 98 39.8
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 8.0e-12 75.5 79 41.8
HanXRQChr09g0258361 Helianthus annuus HOM05D001093 ORTHO05D000743 8.0e-12 75.5 80 47.5
TPR.G18690 Trifolium pratense HOM05D001093 ORTHO05D000743 8.0e-12 75.5 86 40.7
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.4e-11 74.7 85 42.4
DCAR_014418 Daucus carota HOM05D001093 ORTHO05D000743 1.4e-11 74.7 311 22.8
Os12g0161500 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.4e-11 74.7 82 43.9
SHI09430 Sapria himalayana HOM05D001093 ORTHO05D000743 1.4e-11 74.7 105 36.2
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 1.8e-11 74.3 80 40.0
Lsat_1_v5_gn_3_107161 Lactuca sativa HOM05D001093 ORTHO05D000743 1.8e-11 74.3 90 38.9
Nitab4.5_0000138g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.8e-11 74.3 89 37.1
PSO541G5809 Papaver somniferum HOM05D001093 ORTHO05D000743 2.3e-11 73.9 130 33.1
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 2.3e-11 73.9 89 38.2
Peaxi162Scf00263g00923 Petunia axillaris HOM05D001093 ORTHO05D000743 3.1e-11 73.6 93 38.7
PGSC0003DMG402000788 Solanum tuberosum HOM05D001093 ORTHO05D000743 4.0e-11 73.2 93 38.7
TWI60G1406 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 4.0e-11 73.2 91 37.4
Nitab4.5_0000299g0300 Nicotiana tabacum HOM05D001093 ORTHO05D000743 5.2e-11 72.8 84 41.7
Zm00001eb407390 Zea mays HOM05D001093 ORTHO05D000743 5.2e-11 72.8 83 42.2
Solyc04g070990.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 8.9e-11 72.0 93 37.6
Sopen04g026940 Solanum pennellii HOM05D001093 ORTHO05D000743 8.9e-11 72.0 93 37.6
CDE08G1401 Ceratophyllum demersum HOM05D001093 ORTHO05D000743 1.2e-10 71.6 308 23.1
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 1.2e-10 71.6 80 41.2
Lalb_Chr06g0161481 Lupinus albus HOM05D001093 ORTHO05D000743 1.2e-10 71.6 235 26.0
Os11g0160100 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.5e-10 71.2 81 48.1
BcaB07g33670 Brassica carinata HOM05D001093 ORTHO05D000743 2.0e-10 70.9 161 31.7
Migut.C01022 Erythranthe guttata HOM05D001093 ORTHO05D000743 2.0e-10 70.9 90 38.9
Nitab4.5_0004813g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.0e-10 70.9 99 35.4
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 3.4e-10 70.1 78 42.3
Medtr6g034375 Medicago truncatula HOM05D001093 ORTHO05D000743 3.4e-10 70.1 121 33.1
Nitab4.5_0013142g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 3.4e-10 70.1 89 34.8
SalBow6G2465 Salvia bowleyana HOM05D001093 ORTHO05D000743 3.4e-10 70.1 82 40.2
SGA_v2.0_scaffold48G17958 Striga asiatica HOM05D001093 ORTHO05D000743 3.4e-10 70.1 75 41.3
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 4.4e-10 69.7 82 43.9
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 4.4e-10 69.7 163 31.3
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 4.4e-10 69.7 163 31.3
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 4.4e-10 69.7 82 43.9
Thhalv10011612m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 4.4e-10 69.7 86 44.2
AUR62003609 Chenopodium quinoa HOM05D001093 ORTHO05D000743 5.8e-10 69.3 83 41.0
PSO675G4714 Papaver somniferum HOM05D001093 ORTHO05D000743 5.8e-10 69.3 76 40.8
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 7.5e-10 68.9 163 31.3
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 7.5e-10 68.9 77 37.7
ECA232G2941 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.3e-09 68.2 79 36.7
RcHm_v2.0_Chr3g0451401 Rosa chinensis HOM05D001093 ORTHO05D000743 1.3e-09 68.2 140 28.6
Ca_10694_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 1.7e-09 67.8 92 37.0
Psat5g062080 Pisum sativum HOM05D001093 ORTHO05D000743 2.9e-09 67.0 306 20.6
Hund11240 Selenicereus undatus HOM05D001093 ORTHO05D000743 2.9e-09 67.0 232 27.6
CANSAT25G1318 Cannabis sativa HOM05D001093 ORTHO05D000743 3.7e-09 66.6 103 33.0
AUR62003610 Chenopodium quinoa HOM05D001093 ORTHO05D000743 3.7e-09 66.6 162 30.2
FvH4_6g03141 Fragaria vesca HOM05D001093 ORTHO05D000743 3.7e-09 66.6 91 35.2
Medtr6g044110 Medicago truncatula HOM05D001093 ORTHO05D000743 3.7e-09 66.6 111 30.6
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 4.9e-09 66.2 108 31.5
TPR.G39589 Trifolium pratense HOM05D001093 ORTHO05D000743 4.9e-09 66.2 88 37.5
Zm00001eb092100 Zea mays HOM05D001093 ORTHO05D000743 6.4e-09 65.9 104 38.5
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 8.3e-09 65.5 79 40.5
Manes.09G129500 Manihot esculenta HOM05D001093 ORTHO05D000743 1.1e-08 65.1 160 30.0
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 3.2e-08 63.5 84 39.3
AUR62026754 Chenopodium quinoa HOM05D001093 ORTHO05D000743 4.1e-08 63.2 98 33.7
SMO347G0226 Selaginella moellendorffii HOM05D001093 ORTHO05D000743 5.4e-08 62.8 93 35.5
Zm00001eb020140 Zea mays HOM05D001093 ORTHO05D000743 7.0e-08 62.4 174 28.2
AUR62013521 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.2e-07 61.6 98 33.7
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 1.6e-07 61.2 89 39.3
SEGI_03967 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 2.0e-07 60.8 82 40.2
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 2.0e-07 60.8 82 40.2
Ah.02g121920 Amaranthus hybridus HOM05D001093 ORTHO05D000743 2.7e-07 60.5 113 34.5
COL.COLO4_08293 Corchorus olitorius HOM05D001093 ORTHO05D000743 2.7e-07 60.5 86 33.7
Psat0s667g0240 Pisum sativum HOM05D001093 ORTHO05D000743 2.7e-07 60.5 76 38.2
SEGI_02141 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 3.5e-07 60.1 111 27.0
SGA_v2.0_scaffold24G10372 Striga asiatica HOM05D001093 ORTHO05D000743 7.8e-07 58.9 70 37.1
Gorai.008G226700 Gossypium raimondii HOM05D001093 ORTHO05D000743 1.0e-06 58.5 107 34.6
PGSC0003DMG400037482 Solanum tuberosum HOM05D001093 ORTHO05D000743 1.0e-06 58.5 74 40.5
Prupe.5G038800 Prunus persica HOM05D001093 ORTHO05D000743 1.3e-06 58.2 82 40.2
SEGI_01537 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 1.3e-06 58.2 84 38.1
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 1.7e-06 57.8 108 28.7
Os12g0161700 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 2.3e-06 57.4 73 39.7
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.0e-06 57.0 83 32.5
AUR62017921 Chenopodium quinoa HOM05D001093 ORTHO05D000743 3.0e-06 57.0 56 41.1
Psat1g092360 Pisum sativum HOM05D001093 ORTHO05D000743 3.0e-06 57.0 61 41.0
arahy.Tifrunner.gnm1.ann1.0S7EH6 Arachis hypogaea HOM05D001093 ORTHO05D000743 6.6e-06 55.8 59 44.1
arahy.Tifrunner.gnm1.ann1.N0XVDT Arachis hypogaea HOM05D001093 ORTHO05D000743 6.6e-06 55.8 59 44.1
GSVIVG01001662001 Vitis vinifera HOM05D001093 ORTHO05D000743 6.6e-06 55.8 37 59.5
Lj2g0016244 Lotus japonicus HOM05D001093 ORTHO05D000743 8.6e-06 55.5 76 40.8
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 8.6e-06 55.5 106 30.2


User provided reference genes

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